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Lista de obras de Yudong Cai

A Computational Method for Classifying Different Human Tissues with Quantitatively Tissue-Specific Expressed Genes

article

A Shortest-Path-Based Method for the Analysis and Prediction of Fruit-Related Genes in Arabidopsis thaliana

artículo científico publicado en 2016

A committee of NNA classifiers for the prediction of the binding between miRNAs and the target genes using a novel coding method

article

A comparison of computational methods for identifying virulence factors

artículo científico publicado en 2012

A computational method for the identification of candidate drugs for non-small cell lung cancer.

artículo científico publicado en 2017

A computational method for the identification of new candidate carcinogenic and non-carcinogenic chemicals

artículo científico publicado en 2015

A hybrid computational method for the discovery of novel reproduction-related genes

artículo científico publicado en 2015

A hybrid method for prediction and repositioning of drug Anatomical Therapeutic Chemical classes.

artículo científico

A knowledge-based method to predict the cooperative relationship between transcription factors.

artículo científico publicado en 2009

A method to distinguish between lysine acetylation and lysine ubiquitination with feature selection and analysis.

artículo científico publicado en 2015

A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology ⬇️

artículo científico publicado el 21 de noviembre de 2003

A novel approach to predict active sites of enzyme molecules

artículo científico publicado en 2004

A novel computational approach to predict transcription factor DNA binding preference

artículo científico publicado en 2009

A novel computational method to predict transcription factor DNA binding preference.

artículo científico

A novel method of predicting protein disordered regions based on sequence features.

artículo científico publicado en 2013

A novel sequence-based method of predicting protein DNA-binding residues, using a machine learning approach.

artículo científico publicado en 2010

A unified 35-gene signature for both subtype classification and survival prediction in diffuse large B-cell lymphomas

artículo científico publicado en 2010

Alternative Polyadenylation Modification Patterns Reveal Essential Posttranscription Regulatory Mechanisms of Tumorigenesis in Multiple Tumor Types

artículo científico publicado en 2020

An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization

artículo científico publicado en 2007

An ensemble prognostic model for colorectal cancer

artículo científico publicado en 2013

An information-theoretic machine learning approach to expression QTL analysis

artículo científico publicado en 2013

An integrated method for the identification of novel genes related to oral cancer

artículo científico publicado en 2017

Analysis and Identification of Aptamer-Compound Interactions with a Maximum Relevance Minimum Redundancy and Nearest Neighbor Algorithm.

artículo científico publicado en 2016

Analysis and prediction of drug-drug interaction by minimum redundancy maximum relevance and incremental feature selection.

artículo científico publicado en 2016

Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks

artículo científico publicado en 2010

Analysis and prediction of translation rate based on sequence and functional features of the mRNA.

artículo científico publicado en 2011

Analysis of Expression Pattern of snoRNAs in Different Cancer Types with Machine Learning Algorithms ⬇️

artículo científico

Analysis of Gene Expression Profiles in the Human Brain Stem, Cerebellum and Cerebral Cortex

artículo científico publicado en 2016

Analysis of Important Gene Ontology Terms and Biological Pathways Related to Pancreatic Cancer

artículo científico publicado en 2016

Analysis of Lymphoma-Related Genes with Gene Ontology and Kyoto Encyclopedia of Genes and Genomes Enrichment

artículo científico publicado en 2022

Analysis of Protein-Protein Functional Associations by Using Gene Ontology and KEGG Pathway

scientific article published on 18 July 2019

Analysis of protein pathway networks using hybrid properties.

artículo científico publicado en 2010

Analysis of the preferences for splice codes across tissues

artículo científico publicado en 2015

Analysis of tumor suppressor genes based on gene ontology and the KEGG pathway

artículo científico publicado en 2014

Application of SVM to predict membrane protein types

artículo científico publicado en 2004

Application of systems biology and bioinformatics methods in biochemistry and biomedicine

artículo científico publicado en 2013

Application of systems biology and bioinformatics methods in biochemistry and biomedicine 2014.

artículo científico publicado en 2015

Applications of Bioinformatics and Systems Biology in Precision Medicine and Immunooncology

artículo científico publicado en 2018

Artificial neural network method for discriminating coding regions of eukaryotic genes

article

Artificial neural network method for predicting protein secondary structure content

artículo científico publicado en 2002

Artificial neural network method for predicting the specificity of GalNAc-transferase

artículo científico publicado en 1997

Artificial neural network model for predicting alpha-turn types

artículo científico publicado en 1999

Artificial neural network model for predicting membrane protein types

artículo científico publicado en 2001

Artificial neural network model for predicting protein subcellular location

artículo científico publicado en 2002

Artificial neural network model for predicting the specificity of GalNAc-transferase

artículo científico publicado en 1996

Automatic transcription factor classifier based on functional domain composition

artículo científico publicado en 2006

Boosting classifier for predicting protein domain structural class

artículo científico publicado en 2005

Cancer-Related Triplets of mRNA-lncRNA-miRNA Revealed by Integrative Network in Uterine Corpus Endometrial Carcinoma.

artículo científico publicado en 2017

Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property

artículo científico publicado en 2011

Classification of non-small cell lung cancer based on copy number alterations

artículo científico publicado en 2014

Classification of transcription factors using protein primary structure

artículo científico publicado en 2010

Classifying ten types of major cancers based on reverse phase protein array profiles

artículo científico publicado en 2015

Computational analysis of HIV-1 resistance based on gene expression profiles and the virus-host interaction network

artículo científico publicado en 2011

Computational methods for protein-protein interaction and their application

artículo científico publicado en 2005

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method.

artículo científico publicado en 2012

Computational proteomics, systems biology and clinical implications

Computational systems biology methods in molecular biology, chemistry biology, molecular biomedicine, and biopharmacy

artículo científico publicado en 2014

Computationally identifying virulence factors based on KEGG pathways

artículo científico publicado en 2013

Cooperativity among short amyloid stretches in long amyloidogenic sequences

artículo científico publicado en 2012

Crosstissue coexpression network of aging

artículo científico publicado en 2011

Deciphering the Relationship between Obesity and Various Diseases from a Network Perspective.

artículo científico publicado en 2017

Deciphering the effects of gene deletion on yeast longevity using network and machine learning approaches.

artículo científico publicado en 2012

Demonstration of two novel methods for predicting functional siRNA efficiency

artículo científico publicado en 2006

Discovery of new candidate genes related to brain development using protein interaction information

artículo científico publicado en 2015

Discriminating between deleterious and neutral non-frameshifting indels based on protein interaction networks and hybrid properties.

artículo científico publicado en 2014

Discriminating between lysine sumoylation and lysine acetylation using mRMR feature selection and analysis

artículo científico publicado en 2014

Discriminating cirRNAs from other lncRNAs using a hierarchical extreme learning machine (H-ELM) algorithm with feature selection

artículo científico publicado en 2017

Dysfunctions associated with methylation, microRNA expression and gene expression in lung cancer

artículo científico publicado en 2012

Exploring Mouse Protein Function via Multiple Approaches

artículo científico publicado en 2016

Finding candidate drugs for hepatitis C based on chemical-chemical and chemical-protein interactions

artículo científico publicado en 2014

Functional association between influenza A (H1N1) virus and human

artículo científico publicado en 2009

GalNAc-transferase specificity prediction based on feature selection method.

artículo científico publicado en 2008

Gene Ontology and KEGG Pathway Enrichment Analysis of a Drug Target-Based Classification System

artículo científico publicado en 2015

Gene expression profiling gut microbiota in different races of humans

artículo científico publicado en 2016

Gene ontology and KEGG enrichment analyses of genes related to age-related macular degeneration

artículo científico publicado en 2014

Genetic differences among ethnic groups.

artículo científico publicado en 2015

HIV-1 protease cleavage site prediction based on amino acid property

artículo científico publicado en 2009

Hepatitis C virus network based classification of hepatocellular cirrhosis and carcinoma

artículo científico publicado en 2012

Homology-based gene prediction using neural nets

artículo científico publicado en 1998

Identification and analysis of the cleavage site in a signal peptide using SMOTE, dagging, and feature selection methods

artículo científico publicado en 2018

Identification of COVID-19 Infection-Related Human Genes Based on a Random Walk Model in a Virus-Human Protein Interaction Network

artículo científico publicado en 2020

Identification of Candidate Genes Related to Inflammatory Bowel Disease Using Minimum Redundancy Maximum Relevance, Incremental Feature Selection, and the Shortest-Path Approach.

artículo científico publicado en 2017

Identification of Differentially Expressed Genes between Original Breast Cancer and Xenograft Using Machine Learning Algorithms.

artículo científico publicado en 2018

Identification of Genes Associated with Breast Cancer Metastasis to Bone on a Protein-Protein Interaction Network with a Shortest Path Algorithm

artículo científico publicado en 2017

Identification of Influenza A/H7N9 virus infection-related human genes based on shortest paths in a virus-human protein interaction network

artículo científico publicado en 2014

Identification of New Candidate Genes and Chemicals Related to Esophageal Cancer Using a Hybrid Interaction Network of Chemicals and Proteins

artículo científico publicado en 2015

Identification of age-related macular degeneration related genes by applying shortest path algorithm in protein-protein interaction network

artículo científico publicado en 2013

Identification of colorectal cancer related genes with mRMR and shortest path in protein-protein interaction network

artículo científico publicado en 2012

Identification of compound-protein interactions through the analysis of gene ontology, KEGG enrichment for proteins and molecular fragments of compounds.

artículo científico publicado en 2016

Identification of leukemia stem cell expression signatures through Monte Carlo feature selection strategy and support vector machine

artículo científico publicado en 2019

Identification of lung-cancer-related genes with the shortest path approach in a protein-protein interaction network.

artículo científico publicado en 2013

Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma using protein-protein interactions and a shortest path approach

artículo científico publicado en 2016

Identification of retinoblastoma related genes with shortest path in a protein-protein interaction network

artículo científico publicado en 2012

Identification of the Gene Expression Rules That Define the Subtypes in Glioma

article

Identification of the copy number variant biomarkers for breast cancer subtypes

artículo científico publicado en 2018

Identify catalytic triads of serine hydrolases by support vector machines

artículo científico publicado en 2004

Identifying Methylation Pattern and Genes Associated with Breast Cancer Subtypes ⬇️

scientific article published on 31 August 2019

Identifying New Candidate Genes and Chemicals Related to Prostate Cancer Using a Hybrid Network and Shortest Path Approach

artículo científico publicado en 2015

Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network

artículo científico publicado en 2015

Identifying Patients with Atrioventricular Septal Defect in Down Syndrome Populations by Using Self-Normalizing Neural Networks and Feature Selection.

artículo científico publicado en 2018

Identifying chemicals with potential therapy of HIV based on protein-protein and protein-chemical interaction network

artículo científico publicado en 2013

Identifying novel protein phenotype annotations by hybridizing protein-protein interactions and protein sequence similarities.

artículo científico publicado en 2016

Identifying protein complexes using hybrid properties

artículo científico publicado en 2009

Inferring novel genes related to oral cancer with a network embedding method and one-class learning algorithms

scientific article published on 27 August 2019

Information-theoretic analysis of protein sequences shows that amino acids self-cluster

artículo científico publicado en 2002

Investigating gene methylation signatures for fetal intolerance prediction

artículo científico publicado en 2021

Investigation of the roles of trace elements during hepatitis C virus infection using protein-protein interactions and a shortest path algorithm.

artículo científico publicado en 2016

Is it a paradox or misinterpretation?

artículo científico publicado en 2001

Multiple classifier integration for the prediction of protein structural classes.

artículo científico publicado en 2009

Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition

artículo científico publicado en 2003

Novel candidate key drivers in the integrative network of genes, microRNAs, methylations, and copy number variations in squamous cell lung carcinoma.

artículo científico publicado en 2015

Novel computational methods and tools in biomedicine and biopharmacy

artículo científico publicado en 2014

OPMSP: A Computational Method Integrating Protein Interaction and Sequence Information for the Identification of Novel Putative Oncogenes

artículo científico publicado en 2016

Operon prediction based on SVM

artículo científico publicado en 2006

Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches

artículo científico publicado en 2011

Predicting 22 protein localizations in budding yeast

artículo científico publicado en 2004

Predicting A-to-I RNA editing by feature selection and random forest.

artículo científico publicado en 2014

Predicting Anatomical Therapeutic Chemical (ATC) classification of drugs by integrating chemical-chemical interactions and similarities

artículo científico publicado en 2012

Predicting DNA-binding sites of proteins based on sequential and 3D structural information

artículo científico publicado en 2014

Predicting N-terminal acetylation based on feature selection method

artículo científico publicado en 2008

Predicting O-glycosylation sites in mammalian proteins by using SVMs

artículo científico publicado en 2006

Predicting biological functions of compounds based on chemical-chemical interactions

artículo científico publicado en 2011

Predicting chemical toxicity effects based on chemical-chemical interactions

artículo científico publicado en 2013

Predicting drugs side effects based on chemical-chemical interactions and protein-chemical interactions

artículo científico publicado en 2013

Predicting enzyme family class in a hybridization space.

artículo científico publicado en 2004

Predicting enzyme subclass by functional domain composition and pseudo amino acid composition

artículo científico publicado en 2005

Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties

artículo científico publicado en 2011

Predicting membrane protein types with bragging learner

artículo científico publicado en 2008

Predicting metabolic pathways of small molecules and enzymes based on interaction information of chemicals and proteins

artículo científico publicado en 2012

Predicting miRNA's target from primary structure by the nearest neighbor algorithm

artículo científico publicado en 2009

Predicting protease types by hybridizing gene ontology and pseudo amino acid composition

artículo científico publicado en 2006

Predicting protein oxidation sites with feature selection and analysis approach

artículo científico publicado en 2012

Predicting protein phenotypes based on protein-protein interaction network

artículo científico publicado en 2011

Predicting protein quaternary structure by pseudo amino acid composition

artículo científico publicado en 2003

Predicting protein structural class by functional domain composition

artículo científico publicado en 2004

Predicting protein structural class with AdaBoost Learner

artículo científico publicado en 2006

Predicting protein subcellular locations with feature selection and analysis

artículo científico publicado en 2010

Predicting rRNA-, RNA-, and DNA-binding proteins from primary structure with support vector machines.

artículo científico publicado en 2005

Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition.

artículo científico publicado en 2004

Predicting subcellular localization with AdaBoost Learner

artículo científico publicado en 2008

Predicting subcellular location of proteins using integrated-algorithm method

artículo científico publicado en 2009

Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition ⬇️

artículo científico publicado en 2010

Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS).

artículo científico publicado en 2007

Predicting transcriptional activity of multiple site p53 mutants based on hybrid properties

artículo científico publicado en 2011

Prediction and Analysis of Post-Translational Pyruvoyl Residue Modification Sites from Internal Serines in Proteins

artículo científico publicado en 2013

Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models

artículo científico publicado en 2015

Prediction and analysis of essential genes using the enrichments of gene ontology and KEGG pathways.

artículo científico publicado en 2017

Prediction and analysis of protein hydroxyproline and hydroxylysine

artículo científico publicado en 2010

Prediction and analysis of protein methylarginine and methyllysine based on Multisequence features

artículo científico publicado en 2011

Prediction and analysis of protein palmitoylation sites

artículo científico publicado en 2010

Prediction of RNA-binding proteins by voting systems

artículo científico publicado en 2011

Prediction of S-nitrosylation modification sites based on kernel sparse representation classification and mRMR algorithm.

artículo científico publicado en 2014

Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition.

artículo científico publicado en 2004

Prediction of active sites of enzymes by maximum relevance minimum redundancy (mRMR) feature selection

artículo científico publicado en 2012

Prediction of antimicrobial peptides based on sequence alignment and feature selection methods

artículo científico publicado en 2011

Prediction of aptamer-target interacting pairs with pseudo-amino acid composition.

artículo científico publicado en 2014

Prediction of beta-turns

artículo científico publicado en 1998

Prediction of beta-turns with learning machines

artículo científico publicado en 2003

Prediction of body fluids where proteins are secreted into based on protein interaction network

artículo científico publicado en 2011

Prediction of cancer drugs by chemical-chemical interactions

artículo científico publicado en 2014

Prediction of carbamylated lysine sites based on the one-class k-nearest neighbor method

artículo científico publicado en 2013

Prediction of compounds' biological function (metabolic pathways) based on functional group composition

artículo científico publicado en 2008

Prediction of deleterious non-synonymous SNPs based on protein interaction network and hybrid properties

artículo científico publicado en 2010

Prediction of drug indications based on chemical interactions and chemical similarities

artículo científico publicado en 2015

Prediction of effective drug combinations by chemical interaction, protein interaction and target enrichment of KEGG pathways

scientific article published on 05 September 2013

Prediction of gene phenotypes based on GO and KEGG pathway enrichment scores

artículo científico publicado en 2013

Prediction of interaction between small molecule and enzyme using AdaBoost

artículo científico publicado en 2009

Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity

artículo científico

Prediction of interactiveness of proteins and nucleic acids based on feature selections

artículo científico publicado en 2009

Prediction of lysine ubiquitination with mRMR feature selection and analysis

artículo científico publicado en 2011

Prediction of membrane protein types by incorporating amphipathic effects

artículo científico publicado en 2005

Prediction of membrane protein types in a hybrid space

artículo científico publicado en 2008

Prediction of mucin-type O-glycosylation sites by a two-staged strategy

artículo científico publicado en 2010

Prediction of multi-type membrane proteins in human by an integrated approach.

artículo científico publicado en 2014

Prediction of nucleosome positioning based on transcription factor binding sites

artículo científico publicado en 2010

Prediction of peptidase category based on functional domain composition

artículo científico

Prediction of pharmacological and xenobiotic responses to drugs based on time course gene expression profiles

artículo científico publicado en 2009

Prediction of protease types in a hybridization space

artículo científico publicado en 2005

Prediction of protein amidation sites by feature selection and analysis.

artículo científico publicado en 2013

Prediction of protein cleavage site with feature selection by random forest

artículo científico publicado en 2012

Prediction of protein domain with mRMR feature selection and analysis

artículo científico publicado en 2012

Prediction of protein modification sites of pyrrolidone carboxylic acid using mRMR feature selection and analysis

artículo científico publicado en 2011

Prediction of protein secondary structure content by artificial neural network

artículo científico publicado en 2003

Prediction of protein structural classes by neural network

artículo científico publicado en 2000

Prediction of protein structural classes by support vector machines.

artículo científico publicado en 2002

Prediction of protein structural classes using hybrid properties

artículo científico publicado en 2008

Prediction of protein-protein interaction sites by random forest algorithm with mRMR and IFS

artículo científico publicado en 2012

Prediction of protein-protein interactions based on PseAA composition and hybrid feature selection

artículo científico publicado en 2009

Prediction of small molecules' metabolic pathways based on functional group composition

artículo científico publicado en 2009

Prediction of subcellular protein localization based on functional domain composition.

artículo científico publicado en 2007

Prediction of tyrosine sulfation with mRMR feature selection and analysis

artículo científico publicado en 2010

Protein sumoylation sites prediction based on two-stage feature selection.

artículo científico publicado en 2009

Recognition of Immune Cell Markers of COVID-19 Severity with Machine Learning Methods

artículo científico publicado en 2022

Signal propagation in protein interaction network during colorectal cancer progression

artículo científico publicado en 2013

Support Vector Machines for predicting HIV protease cleavage sites in protein

artículo científico publicado en 2002

Support vector machine for SAR/QSAR of phenethyl-amines

artículo científico publicado en 2007

Support vector machine for predicting alpha-turn types.

artículo científico publicado en 2003

Support vector machines for predicting protein structural class

artículo científico publicado en 2001

Support vector machines for predicting rRNA-, RNA-, and DNA-binding proteins from amino acid sequence.

artículo científico publicado en 2003

Support vector machines for predicting the specificity of GalNAc-transferase

artículo científico publicado en 2002

Support vector machines for prediction of protein domain structural class

artículo científico publicado en 2003

Support vector machines for prediction of protein signal sequences and their cleavage sites

artículo científico publicado en 2003

Support vector machines for prediction of protein subcellular location

artículo científico publicado en 2000

Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect

artículo científico publicado en 2002

Support vector machines for the classification and prediction of ?-turn types

artículo científico publicado en 2002

Systems genetics - deciphering the complex disease with a systems approach

artículo científico publicado en 2016

The Use of Chemical-Chemical Interaction and Chemical Structure to Identify New Candidate Chemicals Related to Lung Cancer

artículo científico publicado en 2015

The Use of Gene Ontology Term and KEGG Pathway Enrichment for Analysis of Drug Half-Life

artículo científico publicado en 2016

The Use of Protein-Protein Interactions for the Analysis of the Associations between PM2.5 and Some Diseases

artículo científico publicado en 2016

Tissue Expression Difference between mRNAs and lncRNAs

artículo científico publicado en 2018

Using AdaBoost for the prediction of subcellular location of prokaryotic and eukaryotic proteins

artículo científico publicado en 2008

Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location

artículo científico publicado en 2002

Using GO-PseAA predictor to predict enzyme sub-class.

artículo científico publicado en 2004

Using LogitBoost classifier to predict protein structural classes

artículo científico publicado en 2005

Using compound similarity and functional domain composition for prediction of drug-target interaction networks

artículo científico publicado en 2010

Using functional domain composition to predict enzyme family classes

artículo científico publicado en 2005

Using neural networks for prediction of domain structural classes

artículo científico publicado en 2000

Using neural networks for prediction of subcellular location of prokaryotic and eukaryotic proteins

artículo científico publicado en 2000

Weighted passive nearest neighbor algorithm: A newly-developed supervised classifier

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