Lista de obras - Jakob Bunkenborg - Dominio Público Uruguay

A mass spectrometry–friendly database for cSNP identification

scholarly article by Søren Schandorff et al published June 2007 in Nature Methods

A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation.

artículo científico publicado en 2004

A proteomic analysis of human hemodialysis fluid.

artículo científico publicado en 2005

A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase

artículo científico publicado en 2015

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

artículo científico publicado en 2007

Centrosomes. Regulated assembly of a supramolecular centrosome scaffold in vitro

artículo científico publicado en 2015

Comparison of Aqueous Molecular Dynamics with NMR Relaxation and Residual Dipolar Couplings Favors Internal Motion in a Mannose Oligosaccharide

article

Comprehensive Proteomic Analysis of Human Pancreatic Juice

article

Covalent perturbation as a tool for validation of identifications and PTM mapping applied to bovine alpha-crystallin

artículo científico publicado en 2015

Cutting edge proteomics: benchmarking of six commercial trypsins.

artículo científico publicado en 2013

DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

scholarly article by Martin V Bennetzen published in September 2018

Data extraction from proteomics raw data: an evaluation of nine tandem MS tools using a large Orbitrap data set.

artículo científico publicado en 2012

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

artículo científico publicado en 2004

Discrimination of Isoleucine and Leucine by Dimethylation-Assisted MS3

scholarly article by Sheila Maibom-Thomsen et al published 17 July 2018 in Analytical Chemistry

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications

scientific article published on 27 June 2019

ErbB2-associated changes in the lysosomal proteome.

artículo científico publicado en 2011

Glycopeptide enrichment using a combination of ZIC-HILIC and cotton wool for exploring the glycoproteome of wheat flour albumins

artículo científico publicado en 2014

Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

artículo científico publicado en 2003

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.

artículo científico publicado en 2012

Identification of thioredoxin disulfide targets using a quantitative proteomics approach based on isotope-coded affinity tags

artículo científico publicado en 2008

Identification of thioredoxin target disulfides in proteins released from barley aleurone layers

artículo científico publicado en 2010

Inducing autophagy: a comparative phosphoproteomic study of the cellular response to ammonia and rapamycin

artículo científico publicado en 2013

Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

scientific journal article

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

artículo científico publicado en 2010

Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation

scientific journal article

Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.

artículo científico publicado en 2006

NMR characterization of the DNA binding properties of a novel Hoechst 33258 analogue peptide building block.

artículo científico publicado en 2002

On the sequence selective bis-intercalation of a homodimeric thiazole orange dye in DNA.

artículo científico publicado en 1999

On-Bead Chemical Synthesis and Display of Phosphopeptides for Affinity Pull-Down Proteomics

scientific article published on 01 April 2006

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitative proteomic assessment of very early cellular signaling events

S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells

artículo científico publicado en 2014

SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production

artículo científico publicado en 2010

Screening for N-glycosylated proteins by liquid chromatography mass spectrometry

artículo científico publicado en 2004

Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry

artículo científico publicado en 2005

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response

artículo científico publicado en 2010

The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix

artículo científico publicado en 2014

The barley grain thioredoxin system - an update.

artículo científico

The human cap-binding complex is functionally connected to the nuclear RNA exosome

artículo científico publicado en 2013

The minotaur proteome: Avoiding cross-species identifications deriving from bovine serum in cell culture models

article

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

artículo científico publicado en 2005

Lista de obras de Jakob Bunkenborg

A mass spectrometry–friendly database for cSNP identification

A new strategy for identification of N-glycosylated proteins and unambiguous assignment of their glycosylation sites using HILIC enrichment and partial deglycosylation.

A proteomic analysis of human hemodialysis fluid.

A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase

An Enzymatic Deglycosylation Scheme Enabling Identification of Core FucosylatedN-Glycans and O-Glycosylation Site Mapping of Human Plasma Proteins

Centrosomes. Regulated assembly of a supramolecular centrosome scaffold in vitro

Comparison of Aqueous Molecular Dynamics with NMR Relaxation and Residual Dipolar Couplings Favors Internal Motion in a Mannose Oligosaccharide

Comprehensive Proteomic Analysis of Human Pancreatic Juice

Covalent perturbation as a tool for validation of identifications and PTM mapping applied to bovine alpha-crystallin

Cutting edge proteomics: benchmarking of six commercial trypsins.

DNA damage-induced dynamic changes in abundance and cytosol-nuclear translocation of proteins involved in translational processes, metabolism, and autophagy

Data extraction from proteomics raw data: an evaluation of nine tandem MS tools using a large Orbitrap data set.

Database-independent, database-dependent, and extended interpretation of peptide mass spectra in VEMS V2.0.

Discrimination of Isoleucine and Leucine by Dimethylation-Assisted MS3

Enhanced trypsin on a budget: Stabilization, purification and high-temperature application of inexpensive commercial trypsin for proteomics applications

ErbB2-associated changes in the lysosomal proteome.

Glycopeptide enrichment using a combination of ZIC-HILIC and cotton wool for exploring the glycoproteome of wheat flour albumins

Identification of Thioredoxin Target Disulfides Using Isotope-Coded Affinity Tags

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

Identification of autophagosome-associated proteins and regulators by quantitative proteomic analysis and genetic screens.

Identification of thioredoxin disulfide targets using a quantitative proteomics approach based on isotope-coded affinity tags

Identification of thioredoxin target disulfides in proteins released from barley aleurone layers

Inducing autophagy: a comparative phosphoproteomic study of the cellular response to ammonia and rapamycin

Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

Mammalian Sir2 homolog SIRT3 regulates global mitochondrial lysine acetylation

Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.

NMR characterization of the DNA binding properties of a novel Hoechst 33258 analogue peptide building block.

On the sequence selective bis-intercalation of a homodimeric thiazole orange dye in DNA.

On-Bead Chemical Synthesis and Display of Phosphopeptides for Affinity Pull-Down Proteomics

Quantitation of Multisite EGF Receptor Phosphorylation Using Mass Spectrometry and a Novel Normalization Approach

Quantitative proteomic assessment of very early cellular signaling events

S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells

SIRT3 deacetylates mitochondrial 3-hydroxy-3-methylglutaryl CoA synthase 2 and regulates ketone body production

Screening for N-glycosylated proteins by liquid chromatography mass spectrometry

Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry

Site-specific phosphorylation dynamics of the nuclear proteome during the DNA damage response

The Caenorhabditis elegans pericentriolar material components SPD-2 and SPD-5 are monomeric in the cytoplasm before incorporation into the PCM matrix

The barley grain thioredoxin system - an update.

The human cap-binding complex is functionally connected to the nuclear RNA exosome

The minotaur proteome: Avoiding cross-species identifications deriving from bovine serum in cell culture models

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.