Lista de obras - Ramasubbu Sankararamakrishnan

A survey of mRNA sequences with a non-AUG start codon in RefSeq database

artículo científico publicado en 2006

ATCUN-like metal-binding motifs in proteins: identification and characterization by crystal structure and sequence analysis

artículo científico publicado en 2005

Anion-selective Formate/nitrite transporters: taxonomic distribution, phylogenetic analysis and subfamily-specific conservation pattern in prokaryotes.

artículo científico publicado en 2017

Anti-apoptotic Bcl-XL protein in complex with BH3 peptides of pro-apoptotic Bak, Bad, and Bim proteins: comparative molecular dynamics simulations.

artículo científico publicado en 2008

Antiapoptotic Bcl-2 homolog CED-9 in Caenorhabditis elegans: dynamics of BH3 and CED-4 binding regions and comparison with mammalian antiapoptotic Bcl-2 proteins

artículo científico publicado en 2013

Behavior of solvent-exposed hydrophobic groove in the anti-apoptotic Bcl-XL protein: clues for its ability to bind diverse BH3 ligands from MD simulations

artículo científico publicado en 2013

Binding affinity of pro-apoptotic BH3 peptides for the anti-apoptotic Mcl-1 and A1 proteins: Molecular dynamics simulations of Mcl-1 and A1 in complex with six different BH3 peptides

artículo científico publicado en 2017

Characterization of proline-containing alpha-helix (helix F model of bacteriorhodopsin) by molecular dynamics studies

artículo científico publicado en 1993

Characterization of proline-containing right-handed alpha-helix by molecular dynamics studies

artículo científico publicado en 1991

Comparison of metal-binding strength between methionine and cysteine residues: Implications for the design of metal-binding motifs in proteins.

artículo científico publicado en 2017

Computational Design of BH3-Mimetic Peptide Inhibitors That Can Bind Specifically to Mcl-1 or Bcl-XL: Role of Non-Hot Spot Residues

artículo científico publicado en 2020

Conformational studies on peptides with proline in the right-handed alpha-helical region

scientific article published on 01 January 1990

Controlling in Vitro Insulin Amyloidosis with Stable Peptide Conjugates: A Combined Experimental and Computational Study

scientific article published on 08 December 2015

Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers

artículo científico publicado en 2018

Dynamics of noncovalent interactions in all-α and all-β class proteins: implications for the stability of amyloid aggregates

scientific article published on 14 November 2011

End-to-end and end-to-middle interhelical interactions: new classes of interacting helix pairs in protein structures.

artículo científico publicado en 2009

Enforcing solution phase nanoscopic aggregation in a palindromic tripeptide

scientific article published on 28 February 2005

Force field dependence of phospholipid headgroup and acyl chain properties: comparative molecular dynamics simulations of DMPC bilayers.

artículo científico publicado en 2010

Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

artículo científico publicado en 2012

Identification of core structural residues in the sequentially diverse and structurally homologous Bcl-2 family of proteins

artículo científico publicado en 2010

Imidazole Nitrogens of Two Histidine Residues Participating in N-H…N Hydrogen Bonds in Protein Structures: Structural Bioinformatics Approach Combined with Quantum Chemical Calculations.

artículo científico publicado en 2017

Intra-helical salt-bridge and helix destabilizing residues within the same helical turn: Role of functionally important loop E half-helix in channel regulation of major intrinsic proteins

artículo científico publicado en 2015

Kinked structures of isolated nicotinic receptor M2 helices: a molecular dynamics study

artículo científico publicado en 1994

Lone pair ... pi interactions between water oxygens and aromatic residues: quantum chemical studies based on high-resolution protein structures and model compounds

artículo científico publicado en 2009

MIPModDB: a central resource for the superfamily of major intrinsic proteins

artículo científico publicado en 2012

Major intrinsic protein superfamily: channels with unique structural features and diverse selectivity filters

artículo científico publicado en 2015

Modelling membrane proteins using structural restraints

artículo científico publicado en 1995

Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices

artículo científico publicado en 1995

Molecular dynamics simulations of C-terminal decapeptide of gastrin-releasing peptide in DMPC bilayers: structure, stability and orientation of the peptide hormone within the bilayers

artículo científico publicado en 2007

Molecular dynamics simulations of isolated transmembrane helices of potassium channels

artículo científico publicado en 1996

Molecular dynamics simulations of pro-apoptotic BH3 peptide helices in aqueous medium: relationship between helix stability and their binding affinities to the anti-apoptotic protein Bcl-X(L)

artículo científico publicado en 2011

Molecular dynamics simulations on solvated M2 helix bundles of nicotinic receptors

artículo científico publicado en 1996

Molecular dynamics studies of M2 helices of nicotinic acetylcholine receptors

artículo científico publicado en 1994

Molecular modelling of Staphylococcal delta-toxin ion channels by restrained molecular dynamics

artículo científico publicado en 1996

N-H···N Hydrogen Bonds Involving Histidine Imidazole Nitrogen Atoms: A New Structural Role for Histidine Residues in Proteins.

artículo científico publicado en 2016

New subfamilies of major intrinsic proteins in fungi suggest novel transport properties in fungal channels: implications for the host-fungal interactions

artículo científico publicado en 2014

Oxygen-aromatic contacts in intra-strand base pairs: analysis of high-resolution DNA crystal structures and quantum chemical calculations

artículo científico publicado en 2014

Packing interactions of aib-containing helices: Molecular modeling of parallel dimers of simple hydrophobic helices and of alamethicin

article

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

artículo científico

Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach

artículo científico publicado en 2008

Presence of Intra-helical Salt-Bridge in Loop E Half-Helix Can Influence the Transport Properties of AQP1 and GlpF Channels: Molecular Dynamics Simulations of In Silico Mutants

scientific article published on 23 November 2018

Quantum chemical investigations on intraresidue carbonyl-carbonyl contacts in aspartates of high-resolution protein structures

artículo científico publicado en 2010

Relationship between helix stability and binding affinities: molecular dynamics simulations of Bfl-1/A1-binding pro-apoptotic BH3 peptide helices in explicit solvent.

artículo científico publicado en 2012

Self-contacts in Asx and Glx residues of high-resolution protein structures: role of local environment and tertiary interactions

artículo científico publicado en 2008

Seven-helix bundles: molecular modeling via restrained molecular dynamics.

artículo científico publicado en 1995

Simplified models of the pore domain of the nicotinic acetylcholine receptor

artículo científico publicado en 1994

Solvation, water permeation, and ionic selectivity of a putative model for the pore region of the voltage-gated sodium channel.

artículo científico publicado en 1996

Structural features of isolated M2 helices of nicotinic receptors. Simulated annealing via molecular dynamics studies

artículo científico publicado en 1995

The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics.

artículo científico publicado en 1996

Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures

artículo científico publicado en 2016

Water dynamics in model transbilayer pores.

artículo científico publicado en 1996

Water in channel-like cavities: structure and dynamics.

artículo científico publicado en 1996

Lista de obras de Ramasubbu Sankararamakrishnan

A survey of mRNA sequences with a non-AUG start codon in RefSeq database

ATCUN-like metal-binding motifs in proteins: identification and characterization by crystal structure and sequence analysis

Anion-selective Formate/nitrite transporters: taxonomic distribution, phylogenetic analysis and subfamily-specific conservation pattern in prokaryotes.

Anti-apoptotic Bcl-XL protein in complex with BH3 peptides of pro-apoptotic Bak, Bad, and Bim proteins: comparative molecular dynamics simulations.

Antiapoptotic Bcl-2 homolog CED-9 in Caenorhabditis elegans: dynamics of BH3 and CED-4 binding regions and comparison with mammalian antiapoptotic Bcl-2 proteins

Behavior of solvent-exposed hydrophobic groove in the anti-apoptotic Bcl-XL protein: clues for its ability to bind diverse BH3 ligands from MD simulations

Binding affinity of pro-apoptotic BH3 peptides for the anti-apoptotic Mcl-1 and A1 proteins: Molecular dynamics simulations of Mcl-1 and A1 in complex with six different BH3 peptides

Characterization of proline-containing alpha-helix (helix F model of bacteriorhodopsin) by molecular dynamics studies

Characterization of proline-containing right-handed alpha-helix by molecular dynamics studies

Comparison of metal-binding strength between methionine and cysteine residues: Implications for the design of metal-binding motifs in proteins.

Computational Design of BH3-Mimetic Peptide Inhibitors That Can Bind Specifically to Mcl-1 or Bcl-XL: Role of Non-Hot Spot Residues

Conformational studies on peptides with proline in the right-handed alpha-helical region

Controlling in Vitro Insulin Amyloidosis with Stable Peptide Conjugates: A Combined Experimental and Computational Study

Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers

Dynamics of noncovalent interactions in all-α and all-β class proteins: implications for the stability of amyloid aggregates

End-to-end and end-to-middle interhelical interactions: new classes of interacting helix pairs in protein structures.

Enforcing solution phase nanoscopic aggregation in a palindromic tripeptide

Force field dependence of phospholipid headgroup and acyl chain properties: comparative molecular dynamics simulations of DMPC bilayers.

Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

Identification of core structural residues in the sequentially diverse and structurally homologous Bcl-2 family of proteins

Imidazole Nitrogens of Two Histidine Residues Participating in N-H…N Hydrogen Bonds in Protein Structures: Structural Bioinformatics Approach Combined with Quantum Chemical Calculations.

Intra-helical salt-bridge and helix destabilizing residues within the same helical turn: Role of functionally important loop E half-helix in channel regulation of major intrinsic proteins

Kinked structures of isolated nicotinic receptor M2 helices: a molecular dynamics study

Lone pair ... pi interactions between water oxygens and aromatic residues: quantum chemical studies based on high-resolution protein structures and model compounds

MIPModDB: a central resource for the superfamily of major intrinsic proteins

Major intrinsic protein superfamily: channels with unique structural features and diverse selectivity filters

Modelling membrane proteins using structural restraints

Modelling packing interactions in parallel helix bundles: pentameric bundles of nicotinic receptor M2 helices

Molecular dynamics simulations of C-terminal decapeptide of gastrin-releasing peptide in DMPC bilayers: structure, stability and orientation of the peptide hormone within the bilayers

Molecular dynamics simulations of isolated transmembrane helices of potassium channels

Molecular dynamics simulations of pro-apoptotic BH3 peptide helices in aqueous medium: relationship between helix stability and their binding affinities to the anti-apoptotic protein Bcl-X(L)

Molecular dynamics simulations on solvated M2 helix bundles of nicotinic receptors

Molecular dynamics studies of M2 helices of nicotinic acetylcholine receptors

Molecular modelling of Staphylococcal delta-toxin ion channels by restrained molecular dynamics

N-H···N Hydrogen Bonds Involving Histidine Imidazole Nitrogen Atoms: A New Structural Role for Histidine Residues in Proteins.

New subfamilies of major intrinsic proteins in fungi suggest novel transport properties in fungal channels: implications for the host-fungal interactions

Oxygen-aromatic contacts in intra-strand base pairs: analysis of high-resolution DNA crystal structures and quantum chemical calculations

Packing interactions of aib-containing helices: Molecular modeling of parallel dimers of simple hydrophobic helices and of alamethicin

Parallel helix bundles and ion channels: molecular modeling via simulated annealing and restrained molecular dynamics

Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach

Presence of Intra-helical Salt-Bridge in Loop E Half-Helix Can Influence the Transport Properties of AQP1 and GlpF Channels: Molecular Dynamics Simulations of In Silico Mutants

Quantum chemical investigations on intraresidue carbonyl-carbonyl contacts in aspartates of high-resolution protein structures

Relationship between helix stability and binding affinities: molecular dynamics simulations of Bfl-1/A1-binding pro-apoptotic BH3 peptide helices in explicit solvent.

Self-contacts in Asx and Glx residues of high-resolution protein structures: role of local environment and tertiary interactions

Seven-helix bundles: molecular modeling via restrained molecular dynamics.

Simplified models of the pore domain of the nicotinic acetylcholine receptor

Solvation, water permeation, and ionic selectivity of a putative model for the pore region of the voltage-gated sodium channel.

Structural features of isolated M2 helices of nicotinic receptors. Simulated annealing via molecular dynamics studies

The pore domain of the nicotinic acetylcholine receptor: molecular modeling, pore dimensions, and electrostatics.

Unconventional N-H…N Hydrogen Bonds Involving Proline Backbone Nitrogen in Protein Structures

Water dynamics in model transbilayer pores.

Water in channel-like cavities: structure and dynamics.