Lista de obras - Crispin J Miller - Dominio Público Uruguay

<scp>PTEN</scp> deficiency exposes a requirement for an <scp>ARF GTPase</scp> module for integrin‐dependent invasion in ovarian cancer

artículo científico publicado en 2023

A 26-gene hypoxia signature predicts benefit from hypoxia-modifying therapy in laryngeal cancer but not bladder cancer

artículo científico publicado en 2013

A comparison of digital cameras.

artículo científico publicado en 1999

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

artículo científico publicado en 2010

A global non-coding RNA system modulates fission yeast protein levels in response to stress.

artículo científico publicado en 2014

ADAPT: a database of affymetrix probesets and transcripts

artículo científico publicado en 2005

Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours

artículo científico publicado en 2008

Amplification and translocation of 3q26 with overexpression of EVI1 in Fanconi anemia-derived childhood acute myeloid leukemia with biallelic FANCD1/BRCA2 disruption

artículo científico publicado en 2007

An in vivo hypoxia metagene identifies the novel hypoxia inducible factor target gene SLCO1B3.

artículo científico publicado en 2013

An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome

artículo científico publicado en 2010

Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability

artículo científico publicado en 2011

Bioinformatics goes back to the future

artículo científico publicado en 2003

CXCR4 mediated chemotaxis is regulated by 5T4 oncofetal glycoprotein in mouse embryonic cells

artículo científico publicado en 2010

Cancer-associated protein kinase C mutations reveal kinase's role as tumor suppressor

artículo científico publicado en 2015

Clinical quantitation of diagnostic and predictive gene expression levels in follicular and diffuse large B-cell lymphoma by RT-PCR gene expression profiling

artículo científico

Comprehensive analysis of affymetrix exon arrays using BioConductor

artículo científico publicado en 2008

Discrepancies in cancer genomic sequencing highlight opportunities for driver mutation discovery

artículo científico publicado en 2014

Effects of oestrogen on gene expression in epithelium and stroma of normal human breast tissue

artículo científico publicado en 2006

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases

artículo científico publicado en 2007

Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation.

artículo científico publicado en 2012

Epithelial and stromal microRNA signatures of columnar cell hyperplasia linking Let-7c to precancerous and cancerous breast cancer cell proliferation

artículo científico publicado en 2014

Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells.

artículo científico publicado en 2014

Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis

artículo científico publicado en 2009

Exon level integration of proteomics and microarray data

artículos científicos

Exploiting sample variability to enhance multivariate analysis of microarray data

artículo científico publicado en 2007

GFI1 proteins orchestrate the emergence of haematopoietic stem cells through recruitment of LSD1.

artículo científico publicado en 2015

Gastrointestinal differentiation marker Cytokeratin 20 is regulated by homeobox gene CDX1

artículo científico publicado en 2009

Genetic profiling of tumours using both circulating free DNA and circulating tumour cells isolated from the same preserved whole blood sample.

artículo científico publicado en 2015

Genomic Evaluation of Multiparametric Magnetic Resonance Imaging-visible and -nonvisible Lesions in Clinically Localised Prostate Cancer

artículo científico publicado en 2018

High correspondence between Affymetrix exon and standard expression arrays.

artículo científico publicado en 2007

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

artículo científico publicado en 2006

Hypoxia-driven splicing into noncoding isoforms regulates the DNA damage response

artículo científico publicado en 2016

Hypoxia-mediated down-regulation of Bid and Bax in tumors occurs via hypoxia-inducible factor 1-dependent and -independent mechanisms and contributes to drug resistance

scientific article published on April 2004

In silico error correction improves cfDNA mutation calling

scientific article published on 01 July 2019

Investigation of radiosensitivity gene signatures in cancer cell lines.

artículo científico publicado en 2014

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene

artículo científico publicado en 2010

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene.

artículo científico publicado en 2010

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene.

artículo científico publicado en 2010

Molecular analysis of circulating tumor cells identifies distinct copy-number profiles in patients with chemosensitive and chemorefractory small-cell lung cancer

artículo científico publicado en 2016

Mouse RUNX1C regulates premegakaryocytic/erythroid output and maintains survival of megakaryocyte progenitors

artículo científico publicado en 2017

Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3(Alp6)

artículo científico publicado en 2013

Next-Generation Sequencing Analysis and Algorithms for PDX and CDX Models

artículo científico publicado en 2017

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments.

artículo científico publicado en 2014

Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation. ⬇️

artículo científico publicado en 2016

Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation.

artículo científico publicado en 2016

Poor prognosis associated with human papillomavirus α7 genotypes in cervical carcinoma cannot be explained by intrinsic radiosensitivity.

artículo científico publicado en 2013

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

artículo científico publicado en 2011

Progress in bioinformatics and the importance of being earnest.

artículo científico publicado en 2002

Prospective technical validation and assessment of intra-tumour heterogeneity of a low density array hypoxia gene profile in head and neck squamous cell carcinoma

artículo científico publicado en 2012

Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis

artículo científico publicado en 2007

Quantitative proteomics reveals posttranslational control as a regulatory factor in primary hematopoietic stem cells

scientific article published on 28 February 2006

RAC2, AEP, and ICAM1 expression are associated with CNS disease in a mouse model of pre-B childhood acute lymphoblastic leukemia

artículo científico publicado en 2011

RUNX1 positively regulates a cell adhesion and migration program in murine hemogenic endothelium prior to blood emergence.

artículo científico publicado en 2014

RUNX1B Expression Is Highly Heterogeneous and Distinguishes Megakaryocytic and Erythroid Lineage Fate in Adult Mouse Hematopoiesis

artículo científico publicado en 2016

Recurrent MLK4 Loss-of-Function Mutations Suppress JNK Signaling to Promote Colon Tumorigenesis.

artículo científico publicado en 2015

Relation of a Hypoxia Metagene Derived from Head and Neck Cancer to Prognosis of Multiple Cancers

article

Signaling pathway screening platforms are an efficient approach to identify therapeutic targets in cancers that lack known driver mutations: a case report for a cancer of unknown primary origin

artículo científico publicado en 2018

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

artículo científico publicado en 2005

Stromal cell-mediated mitochondrial redox adaptation regulates drug resistance in childhood acute lymphoblastic leukemia

artículo científico publicado en 2015

Targeted genetic dependency screen facilitates identification of actionable mutations in FGFR4, MAP3K9, and PAK5 in lung cancer

artículo científico publicado en 2013

The histone demethylase KDM1A sustains the oncogenic potential of MLL-AF9 leukemia stem cells

artículo científico publicado en 2012

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis

artículo científico publicado en 2008

The utility of MAS5 expression summary and detection call algorithms

artículo científico publicado en 2007

Traject3d allows label-free identification of distinct co-occurring phenotypes within 3D culture by live imaging

artículo científico publicado en 2022

Truncation- and motif-based pan-cancer analysis reveals tumor-suppressing kinases.

artículo científico publicado en 2018

Tumorigenicity and genetic profiling of circulating tumor cells in small-cell lung cancer.

artículo científico publicado en 2014

Tumourigenic non-small-cell lung cancer mesenchymal circulating tumour cells: a clinical case study.

artículo científico publicado en 2016

Using large-scale genomics data to identify driver mutations in lung cancer: methods and challenges

artículo científico publicado en 2015

Vasculogenic mimicry in small cell lung cancer

artículo científico publicado en 2016

Which craft is best in bioinformatics?

artículo científico publicado en 2001

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

artículo científico publicado en 2007

rHVDM: an R package to predict the activity and targets of a transcription factor

artículo científico publicado en 2008

twoddpcr: An R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.

artículo científico publicado en 2017

Lista de obras de Crispin J Miller

<scp>PTEN</scp> deficiency exposes a requirement for an <scp>ARF GTPase</scp> module for integrin‐dependent invasion in ovarian cancer

A 26-gene hypoxia signature predicts benefit from hypoxia-modifying therapy in laryngeal cancer but not bladder cancer

A comparison of digital cameras.

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

A global non-coding RNA system modulates fission yeast protein levels in response to stress.

ADAPT: a database of affymetrix probesets and transcripts

Acquisition of biologically relevant gene expression data by Affymetrix microarray analysis of archival formalin-fixed paraffin-embedded tumours

Amplification and translocation of 3q26 with overexpression of EVI1 in Fanconi anemia-derived childhood acute myeloid leukemia with biallelic FANCD1/BRCA2 disruption

An in vivo hypoxia metagene identifies the novel hypoxia inducible factor target gene SLCO1B3.

An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome

Augmented annotation of the Schizosaccharomyces pombe genome reveals additional genes required for growth and viability

Bioinformatics goes back to the future

CXCR4 mediated chemotaxis is regulated by 5T4 oncofetal glycoprotein in mouse embryonic cells

Cancer-associated protein kinase C mutations reveal kinase's role as tumor suppressor

Clinical quantitation of diagnostic and predictive gene expression levels in follicular and diffuse large B-cell lymphoma by RT-PCR gene expression profiling

Comprehensive analysis of affymetrix exon arrays using BioConductor

Discrepancies in cancer genomic sequencing highlight opportunities for driver mutation discovery

Effects of oestrogen on gene expression in epithelium and stroma of normal human breast tissue

Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases

Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation.

Epithelial and stromal microRNA signatures of columnar cell hyperplasia linking Let-7c to precancerous and cancerous breast cancer cell proliferation

Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells.

Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis

Exon level integration of proteomics and microarray data

Exploiting sample variability to enhance multivariate analysis of microarray data

GFI1 proteins orchestrate the emergence of haematopoietic stem cells through recruitment of LSD1.

Gastrointestinal differentiation marker Cytokeratin 20 is regulated by homeobox gene CDX1

Genetic profiling of tumours using both circulating free DNA and circulating tumour cells isolated from the same preserved whole blood sample.

Genomic Evaluation of Multiparametric Magnetic Resonance Imaging-visible and -nonvisible Lesions in Clinically Localised Prostate Cancer

High correspondence between Affymetrix exon and standard expression arrays.

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

Hypoxia-driven splicing into noncoding isoforms regulates the DNA damage response

Hypoxia-mediated down-regulation of Bid and Bax in tumors occurs via hypoxia-inducible factor 1-dependent and -independent mechanisms and contributes to drug resistance

In silico error correction improves cfDNA mutation calling

Investigation of radiosensitivity gene signatures in cancer cell lines.

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene.

Large meta-analysis of multiple cancers reveals a common, compact and highly prognostic hypoxia metagene.

Molecular analysis of circulating tumor cells identifies distinct copy-number profiles in patients with chemosensitive and chemorefractory small-cell lung cancer

Mouse RUNX1C regulates premegakaryocytic/erythroid output and maintains survival of megakaryocyte progenitors

Mzt1/Tam4, a fission yeast MOZART1 homologue, is an essential component of the γ-tubulin complex and directly interacts with GCP3(Alp6)

Next-Generation Sequencing Analysis and Algorithms for PDX and CDX Models

Onco-STS: a web-based laboratory information management system for sample and analysis tracking in oncogenomic experiments.

Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation. ⬇️

Oncogenic KRAS Regulates Tumor Cell Signaling via Stromal Reciprocation.

Poor prognosis associated with human papillomavirus α7 genotypes in cervical carcinoma cannot be explained by intrinsic radiosensitivity.

Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe

Progress in bioinformatics and the importance of being earnest.

Prospective technical validation and assessment of intra-tumour heterogeneity of a low density array hypoxia gene profile in head and neck squamous cell carcinoma

Quantitative proteomics analysis demonstrates post-transcriptional regulation of embryonic stem cell differentiation to hematopoiesis

Quantitative proteomics reveals posttranslational control as a regulatory factor in primary hematopoietic stem cells

RAC2, AEP, and ICAM1 expression are associated with CNS disease in a mouse model of pre-B childhood acute lymphoblastic leukemia

RUNX1 positively regulates a cell adhesion and migration program in murine hemogenic endothelium prior to blood emergence.

RUNX1B Expression Is Highly Heterogeneous and Distinguishes Megakaryocytic and Erythroid Lineage Fate in Adult Mouse Hematopoiesis

Recurrent MLK4 Loss-of-Function Mutations Suppress JNK Signaling to Promote Colon Tumorigenesis.

Relation of a Hypoxia Metagene Derived from Head and Neck Cancer to Prognosis of Multiple Cancers

Signaling pathway screening platforms are an efficient approach to identify therapeutic targets in cancers that lack known driver mutations: a case report for a cancer of unknown primary origin

Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis

Stromal cell-mediated mitochondrial redox adaptation regulates drug resistance in childhood acute lymphoblastic leukemia

Targeted genetic dependency screen facilitates identification of actionable mutations in FGFR4, MAP3K9, and PAK5 in lung cancer

The histone demethylase KDM1A sustains the oncogenic potential of MLL-AF9 leukemia stem cells

The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets - improving meta-analysis and prediction of prognosis

The utility of MAS5 expression summary and detection call algorithms

Traject3d allows label-free identification of distinct co-occurring phenotypes within 3D culture by live imaging

Truncation- and motif-based pan-cancer analysis reveals tumor-suppressing kinases.

Tumorigenicity and genetic profiling of circulating tumor cells in small-cell lung cancer.

Tumourigenic non-small-cell lung cancer mesenchymal circulating tumour cells: a clinical case study.

Using large-scale genomics data to identify driver mutations in lung cancer: methods and challenges

Vasculogenic mimicry in small cell lung cancer

Which craft is best in bioinformatics?

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis.

rHVDM: an R package to predict the activity and targets of a transcription factor

twoddpcr: An R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.