Lista de obras - Cecilia Arighi - Dominio Público Uruguay

A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets

artículo científico publicado en 2020

A Tutorial on Protein Ontology Resources for Proteomic Studies ⬇️

artículo científico publicado el 1 de enero de 2011

A crowdsourcing open platform for literature curation in UniProt

artículo científico publicado en 2021

A framework for biomedical figure segmentation towards image-based document retrieval

artículo científico publicado en 2013

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

An evolutionarily conserved motif is required for Plasmodesmata-located protein 5 to regulate cell-to-cell movement

artículo científico publicado en 2020

An improved ontological representation of dendritic cells as a paradigm for all cell types

artículo científico publicado en 2009

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

artículo científico publicado en 2013

Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature

artículo científico

BC4GO: a full-text corpus for the BioCreative IV GO task

artículo científico publicado en 2014

BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph

artículo científico publicado en 2016

BioCreative III interactive task: an overview

artículo científico publicado en 2011

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

artículo científico publicado en 2016

BioCreative-2012 virtual issue

artículo científico publicado en 2012

BioCreative-IV virtual issue

artículo científico publicado en 2014

Bioinformatics Knowledge Map for Analysis of Beta-Catenin Function in Cancer

artículo científico publicado en 2015

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

artículo científico publicado en 2012

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

artículo científico publicado en 2020

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

artículo científico publicado en 2021

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

artículo científico publicado en 2015

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint

artículo científico publicado en 2013

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

artículo científico publicado en 2015

Divalent interaction of the GGAs with the Rabaptin-5-Rabex-5 complex

artículo científico publicado en 2003

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

artículo científico publicado en 2014

Framework for a protein ontology

artículo científico publicado en 2007

Framework for a protein ontology

Gene Ontology Consortium: going forward

artículo científico publicado en 2015

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data

artículo científico publicado en 2007

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

artículo científico publicado en 2018

Micellar lipoproteins as the possible storage and translocation form of intracellular diacylglycerol.

artículo científico publicado en 1998

Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the centrosome

artículo científico publicado en 2018

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study ⬇️

artículo científico publicado en 2017

On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study

artículo científico publicado en 2016

Ongoing and future developments at the Universal Protein Resource

artículo científico publicado en 2011

Overview of the BioCreative III Workshop

artículo científico publicado en 2011

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII

artículo científico publicado en 2022

Overview of the gene ontology task at BioCreative IV

artículo científico publicado en 2014

Overview of the interactive task in BioCreative V

artículo científico publicado en 2016

PIRSF family classification system for protein functional and evolutionary analysis

artículo científico publicado en 2006

PIRSitePredict for protein functional site prediction using position-specific rules

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

artículo científico publicado en 2016

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

artículo científico publicado en 2016

Protein Ontology: a controlled structured network of protein entities

artículo científico publicado en 2013

Protein ontology on the semantic web for knowledge discovery

artículo científico publicado en 2020

RESTful API for iPTMnet: a resource for protein post-translational modification network discovery

scientific article published on 01 January 2020

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information

artículo científico publicado en 2015

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

artículo científico publicado en 2014

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

artículo científico publicado en 2012

Reorganizing the protein space at the Universal Protein Resource (UniProt)

artículo científico publicado en 2012

Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor

artículo científico publicado en 2004

Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology

artículo científico

Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, gamma-ear-containing, ADP-ribosylation-factor-binding proteins

artículo científico publicado en 2005

TGF-beta signaling proteins and the Protein Ontology

artículo científico publicado en 2009

Temperature-induced conformational switch in intestinal fatty acid binding protein (IFABP) revealing an alternative mode for ligand binding

artículo científico publicado en 2003

Temperature-induced conformational transition of intestinal fatty acid binding protein enhancing ligand binding: a functional, spectroscopic, and molecular modeling study.

artículo científico publicado en 1998

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach

Text mining for the biocuration workflow

artículo científico publicado en 2012

The Protein Ontology: a structured representation of protein forms and complexes

artículo científico publicado en 2010

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

artículo científico publicado en 2012

The representation of protein complexes in the Protein Ontology (PRO).

artículo científico publicado en 2011

Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.

artículo científico publicado en 2015

Tutorial on Protein Ontology Resources

artículo científico

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

artículo científico publicado en 2020

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

artículo científico publicado en 2020

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

artículo científico publicado en 2020

Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint

artículo científico publicado en 2013

Utilizing image and caption information for biomedical document classification

artículo científico publicado en 2021

eFIP: a tool for mining functional impact of phosphorylation from literature

artículo científico publicado en 2011

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

artículo científico publicado en 2017

iPTMnet: Integrative Bioinformatics for Studying PTM Networks

artículo científico

iPTMnet: an integrated resource for protein post-translational modification network discovery

artículo científico publicado en 2017

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

artículo científico publicado en 2018

miRTex: A Text Mining System for miRNA-Gene Relation Extraction

artículo científico publicado en 2015

pGenN, a gene normalization tool for plant genes and proteins in scientific literature

artículo científico publicado en 2015

Lista de obras de Cecilia Arighi

A Coordinated Approach by Public Domain Bioinformatics Resources to Aid the Fight Against Alzheimer's Disease Through Expert Curation of Key Protein Targets

A Tutorial on Protein Ontology Resources for Proteomic Studies ⬇️

A crowdsourcing open platform for literature curation in UniProt

A framework for biomedical figure segmentation towards image-based document retrieval

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance

An evolutionarily conserved motif is required for Plasmodesmata-located protein 5 to regulate cell-to-cell movement

An improved ontological representation of dendritic cells as a paradigm for all cell types

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

Analysis of Protein Phosphorylation and Its Functional Impact on Protein-Protein Interactions via Text Mining of the Scientific Literature

BC4GO: a full-text corpus for the BioCreative IV GO task

BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph

BioCreative III interactive task: an overview

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

BioCreative-2012 virtual issue

BioCreative-IV virtual issue

Bioinformatics Knowledge Map for Analysis of Beta-Catenin Function in Cancer

Community annotation and bioinformatics workforce development in concert--Little Skate Genome Annotation Workshops and Jamborees

Computational Strategies to Combat COVID-19: Useful Tools to Accelerate SARS-CoV-2 and Coronavirus Research

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint

Correction: Toll-Like Receptor Signaling in Vertebrates: Testing the Integration of Protein, Complex, and Pathway Data in the Protein Ontology Framework

Divalent interaction of the GGAs with the Rabaptin-5-Rabex-5 complex

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data

Framework for a protein ontology

Framework for a protein ontology

Gene Ontology Consortium: going forward

Integration of bioinformatics resources for functional analysis of gene expression and proteomic data

Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.

Micellar lipoproteins as the possible storage and translocation form of intracellular diacylglycerol.

Murine Oviductosomes (OVS) microRNA profiling during the estrous cycle: Delivery of OVS-borne microRNAs to sperm where miR-34c-5p localizes at the centrosome

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study ⬇️

On expert curation and sustainability: UniProtKB/Swiss-Prot as a case study

Ongoing and future developments at the Universal Protein Resource

Overview of the BioCreative III Workshop

Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII

Overview of the gene ontology task at BioCreative IV

Overview of the interactive task in BioCreative V

PIRSF family classification system for protein functional and evolutionary analysis

PIRSitePredict for protein functional site prediction using position-specific rules

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities

Protein Ontology: a controlled structured network of protein entities

Protein ontology on the semantic web for knowledge discovery

RESTful API for iPTMnet: a resource for protein post-translational modification network discovery

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

Recent advances in biocuration: meeting report from the Fifth International Biocuration Conference

Reorganizing the protein space at the Universal Protein Resource (UniProt)

Role of the mammalian retromer in sorting of the cation-independent mannose 6-phosphate receptor

Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology

Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, gamma-ear-containing, ADP-ribosylation-factor-binding proteins

TGF-beta signaling proteins and the Protein Ontology

Temperature-induced conformational switch in intestinal fatty acid binding protein (IFABP) revealing an alternative mode for ligand binding

Temperature-induced conformational transition of intestinal fatty acid binding protein enhancing ligand binding: a functional, spectroscopic, and molecular modeling study.

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach

Text mining for the biocuration workflow

The Protein Ontology: a structured representation of protein forms and complexes

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

The representation of protein complexes in the Protein Ontology (PRO).

Toll-like receptor signaling in vertebrates: testing the integration of protein, complex, and pathway data in the protein ontology framework.

Tutorial on Protein Ontology Resources

UPCLASS: a deep learning-based classifier for UniProtKB entry publications

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase

Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint

Utilizing image and caption information for biomedical document classification

eFIP: a tool for mining functional impact of phosphorylation from literature

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality

iPTMnet: Integrative Bioinformatics for Studying PTM Networks

iPTMnet: an integrated resource for protein post-translational modification network discovery

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

miRTex: A Text Mining System for miRNA-Gene Relation Extraction

pGenN, a gene normalization tool for plant genes and proteins in scientific literature