Lista de obras - Thomas M. Keane - Dominio Público Uruguay

A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity.

artículo científico publicado en 2018

A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains

artículo científico publicado en 2013

A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis

artículo científico publicado en 2012

A simple method for directional transcriptome sequencing using Illumina technology

artículo científico publicado en 2009

A strategy to identify dominant point mutant modifiers of a quantitative trait

artículo científico publicado en 2014

ABACAS: algorithm-based automatic contiguation of assembled sequences

artículo científico publicado en 2009

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

artículo científico publicado en 2006

Chromosome assembly of large and complex genomes using multiple references

scientific article published on 19 October 2018

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

artículo científico publicado en 2011

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

article published in 2017

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents

artículo científico publicado en 2013

Crypt4GH: a file format standard enabling native access to encrypted data

artículo científico publicado en 2021

DPRml: distributed phylogeny reconstruction by maximum likelihood.

artículo científico publicado en 2004

DSEARCH: sensitive database searching using distributed computing

artículo científico publicado en 2004

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

artículo científico publicado en 2017

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

artículo científico publicado en 2016

Emergence of a three codon deletion in gag p17 in HIV type 1 subtype C long-term survivors, and general population spread

artículo científico publicado en 2006

Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

artículo científico publicado en 2010

GA4GH: International policies and standards for data sharing across genomic research and healthcare

artículo científico publicado en 2021

Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat

artículo científico publicado en 2013

Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes

artículo científico publicado en 2009

Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells

artículo científico publicado en 2016

Genomic analysis of a novel spontaneous albino C57BL/6N mouse strain

artículo científico publicado en 2013

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system

artículo científico publicado en 2013

Go retro and get a GRIP.

artículo científico publicado en 2013

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

artículo científico publicado en 2012

Identification of structural variation in mouse genomes

artículo científico publicado en 2014

Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus

artículo científico publicado en 2015

Mouse genomic variation and its effect on phenotypes and gene regulation

artículo científico publicado en 2011

Mouse protein coding diversity: What's left to discover?

scientific article published on 14 November 2019

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

artículo científico publicado en 2007

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Next-generation sequencing of experimental mouse strains

artículo científico publicado en 2012

Next-generation sequencing of vertebrate experimental organisms

artículo científico publicado en 2009

Nonsense mutations in the shelterin complex genes ACD and TERF2IP in familial melanoma

artículo científico publicado en 2014

POT1 loss-of-function variants predispose to familial melanoma

artículo científico publicado en 2014

Plasmodium falciparum var gene expression is modified by host immunity

artículo científico publicado en 2009

Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles

artículo científico publicado en 2017

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

artículo científico publicado en 2014

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

artículo científico publicado en 2018

RetroSeq: transposable element discovery from next-generation sequencing data

artículo científico publicado en 2012

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

artículo científico publicado en 2011

Sequence-based characterization of structural variation in the mouse genome

artículo científico publicado en 2011

Sequencing and characterization of the FVB/NJ mouse genome

artículo científico publicado en 2012

Similarities and differences in patterns of germline mutation between mice and humans

scientific article published on 06 September 2019

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

scientific article published on 01 October 2018

Structural Variation Shapes the Landscape of Recombination in Mouse.

artículo científico publicado en 2017

Synthetic viability genomic screening defines Sae2 function in DNA repair

artículo científico publicado en 2015

Targeting of Slc25a21 is associated with orofacial defects and otitis media due to disrupted expression of a neighbouring gene.

artículo científico publicado en 2014

The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo.

artículo científico publicado en 2015

The European Genome-phenome Archive in 2021

artículo científico publicado en 2022

The European Nucleotide Archive in 2017.

artículo científico publicado en 2017

The European Nucleotide Archive in 2018

artículo científico publicado en 2019

The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes

artículo científico publicado en 2015

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

artículo científico publicado en 2013

The fine-scale architecture of structural variants in 17 mouse genomes

artículo científico publicado en 2012

The genomic landscape shaped by selection on transposable elements across 18 mouse strains

artículo científico publicado en 2012

The mutational landscapes of genetic and chemical models of Kras-driven lung cancer

artículo científico publicado en 2014

Transcriptional activity and strain-specific history of mouse pseudogenes

artículo científico publicado en 2020

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

artículo científico publicado en 2016

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers

artículo científico publicado en 2016

htsget: a protocol for securely streaming genomic data

article

Lista de obras de Thomas M. Keane

A Requirement for Zic2 in the Regulation of Nodal Expression Underlies the Establishment of Left-Sided Identity.

A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains

A dominantly acting murine allele of Mcm4 causes chromosomal abnormalities and promotes tumorigenesis

A simple method for directional transcriptome sequencing using Illumina technology

A strategy to identify dominant point mutant modifiers of a quantitative trait

ABACAS: algorithm-based automatic contiguation of assembled sequences

Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified

Chromosome assembly of large and complex genomes using multiple references

Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux

Comparative Annotation Toolkit (CAT) - simultaneous clade and personal genome annotation

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation

Contributions of protein-coding and regulatory change to adaptive molecular evolution in murid rodents

Crypt4GH: a file format standard enabling native access to encrypted data

DPRml: distributed phylogeny reconstruction by maximum likelihood.

DSEARCH: sensitive database searching using distributed computing

De novo yeast genome assemblies from MinION, PacBio and MiSeq platforms

Deep genome sequencing and variation analysis of 13 inbred mouse strains defines candidate phenotypic alleles, private variation and homozygous truncating mutations

Emergence of a three codon deletion in gag p17 in HIV type 1 subtype C long-term survivors, and general population spread

Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly

GA4GH: International policies and standards for data sharing across genomic research and healthcare

Genome sequencing reveals loci under artificial selection that underlie disease phenotypes in the laboratory rat

Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes

Genome-wide genetic screening with chemically mutagenized haploid embryonic stem cells

Genomic analysis of a novel spontaneous albino C57BL/6N mouse strain

Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system

Go retro and get a GRIP.

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

Identification of structural variation in mouse genomes

Interplay between Gliotoxin Resistance, Secretion, and the Methyl/Methionine Cycle in Aspergillus fumigatus

Mouse genomic variation and its effect on phenotypes and gene regulation

Mouse protein coding diversity: What's left to discover?

MultiPhyl: a high-throughput phylogenomics webserver using distributed computing

Multiple laboratory mouse reference genomes define strain specific haplotypes and novel functional loci

Next-generation sequencing of experimental mouse strains

Next-generation sequencing of vertebrate experimental organisms

Nonsense mutations in the shelterin complex genes ACD and TERF2IP in familial melanoma

POT1 loss-of-function variants predispose to familial melanoma

Plasmodium falciparum var gene expression is modified by host immunity

Proteomic Characterization of Armillaria mellea Reveals Oxidative Stress Response Mechanisms and Altered Secondary Metabolism Profiles

Pseudogenes in the mouse lineage: transcriptional activity and strain-specific history

RNA-seq reveals the pan-transcriptomic impact of attenuating the gliotoxin self-protection mechanism in Aspergillus fumigatus

Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.

RetroSeq: transposable element discovery from next-generation sequencing data

Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms

Sequence-based characterization of structural variation in the mouse genome

Sequencing and characterization of the FVB/NJ mouse genome

Similarities and differences in patterns of germline mutation between mice and humans

Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci

Structural Variation Shapes the Landscape of Recombination in Mouse.

Synthetic viability genomic screening defines Sae2 function in DNA repair

Targeting of Slc25a21 is associated with orofacial defects and otitis media due to disrupted expression of a neighbouring gene.

The BRAF pseudogene functions as a competitive endogenous RNA and induces lymphoma in vivo.

The European Genome-phenome Archive in 2021

The European Nucleotide Archive in 2017.

The European Nucleotide Archive in 2018

The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes

The ancestor of extant Japanese fancy mice contributed to the mosaic genomes of classical inbred strains

The fine-scale architecture of structural variants in 17 mouse genomes

The genomic landscape shaped by selection on transposable elements across 18 mouse strains

The mutational landscapes of genetic and chemical models of Kras-driven lung cancer

Transcriptional activity and strain-specific history of mouse pseudogenes

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers

htsget: a protocol for securely streaming genomic data