Lista de obras - Nicola Mulder - Dominio Público Uruguay

A Genomic and Protein-Protein Interaction Analyses of Nonsyndromic Hearing Impairment in Cameroon Using Targeted Genomic Enrichment and Massively Parallel Sequencing.

artículo científico publicado en 2017

A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae

artículo científico publicado en 2016

A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology ⬇️

artículo científico publicado el 15 de mayo de 2012

A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study

artículo científico publicado en 2018

A comprehensive survey of models for dissecting local ancestry deconvolution in human genome

scholarly article by Ephifania Geza published in June 2018

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations

artículo científico publicado en 2015

A global perspective on bioinformatics training needs

A mathematical representation of the development of Mycobacterium tuberculosis active, latent and dormant stages ⬇️

artículo científico publicado el 29 de septiembre de 2011

A multi-scenario genome-wide medical population genetics simulation framework.

artículo científico publicado en 2017

A quick guide for building a successful bioinformatics community

artículo científico publicado en 2015

A review of clinical pharmacogenetics Studies in African populations

artículo científico publicado en 2020

A systems-level analysis of drug-target-disease associations for drug repositioning

artículo científico publicado en 2017

A web-based protein interaction network visualizer

artículo científico publicado en 2014

A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool

artículo científico publicado en 2015

A19 The impact of HIV-1 on the evolution of Mycobacterium tuberculosis.

artículo científico publicado en 2018

ANIMA: Association Network Integration for Multiscale Analysis

ANIMA: Association network integration for multiscale analysis

artículo científico publicado en 2018

Accessing Biospecimens from the H3Africa Consortium.

artículo científico publicado en 2017

Accumulation of splice variants and transcripts in response to PI3K inhibition in T cells

artículo científico publicado en 2013

Advancing the international data science workforce through shared training and education

scholarly article by John Darrell Van Horn published in March 2019

Afri-Can Forum 2 : Johannesburg, South Africa. 16-18 February 2015

Analysis of Duplicate Gene Families in Microbial Genomes and Application to the Study of Gene Duplication in M. tuberculosis

article

Applications of InterPro in protein annotation and genome analysis

artículo científico

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

artículo científico publicado en 2016

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

artículo científico publicado en 2017

Bamako 2009 conference on the bioinformatics of infectious diseases

artículo científico publicado en 2011

Best practices in bioinformatics training for life scientists

artículo científico publicado en 2013

Bioinformatics education--perspectives and challenges out of Africa

artículo científico publicado en 2014

Biotechnology Innovators To Convene in Cape Town, South Africa: Pharmacogenetics and Precision Medicine Conference (April 7-9, 2016).

artículo científico publicado en 2015

Change on the fly: using machine learning in the monitoring and evaluation of digital health programs to improve evidence generation and implementation in real time (Preprint)

article

Characterization of a Mycobacterium tuberculosis homologue of the Streptomyces coelicolor whiB gene.

artículo científico publicado en 1999

Classification of proteins into families

Co-infection with Mycobacterium tuberculosis and human immunodeficiency virus: an overview and motivation for systems approaches

artículo científico publicado en 2013

Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis.

artículo científico publicado en 2007

Contribution of microarray data to the advancement of knowledge on the Mycobacterium tuberculosis interactome: Use of the random partial least squares approach

scholarly article by Gaston K Mazandu et al published June 2011 in Infection, Genetics and Evolution

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

artículo científico publicado en 2015

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

artículo científico publicado en 2007

DAS writeback: a collaborative annotation system ⬇️

artículo científico publicado en 2011

DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

artículo científico publicado en 2013

Dasty3, a WEB framework for DAS.

artículo científico

Data acquisition and data/knowledge sharing in global genomic studies

artículo científico publicado en 2014

Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience

artículo científico publicado en 2017

Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method

artículo científico publicado en 2013

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

artículo científico publicado en 2018

Development of Bioinformatics Infrastructure for Genomics Research in H3Africa.

artículo científico publicado en 2017

Development to enable precision medicine in Africa

article

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

artículo científico publicado en 2018

Does having a mobile phone matter? Linking phone access among women to health in India: An exploratory analysis of the National Family Health Survey

scientific article published on 20 July 2020

Editorial: The Genetic and Environmental Basis for Diseases in Understudied Populations

scientific article published on 23 September 2020

Environmental and social factors impacting on epidemic and endemic tuberculosis: a modelling analysis

artículo científico publicado en 2018

Ethical and practical issues to consider in the governance of genomic and human research data and data sharing in South Africa: a meeting report

scientific article published on 22 May 2019

Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants.

artículo científico publicado en 2018

Four simple recommendations to encourage best practices in research software

artículo científico publicado en 2017

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems ⬇️

artículo científico publicado en 2011

Function prediction and analysis of mycobacterium tuberculosis hypothetical proteins

artículo científico publicado en 2012

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

artículo científico publicado en 2015

GenGraph: a python module for the simple generation and manipulation of genome graphs

scientific article published on 25 October 2019

Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

artículo científico

Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification

artículo científico publicado en 2011

Genetic modifiers of long-term survival in sickle cell anemia

artículo científico publicado en 2020

Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease

scholarly article published 8 June 2018

Genome-wide association study of ancestry-specific TB risk in the South African Coloured population

scientific journal article

Genomic Research Data Generation, Analysis and Sharing – Challenges in the African Setting

Getting the most out of protein family classification resources

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa.

artículo científico publicado en 2015

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

artículo científico publicado en 2016

H3ABioNet: Developing Sustainable Bioinformatics Capacity in Africa

article

HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort.

artículo científico publicado en 2018

Hackathons as a means of accelerating scientific discoveries and knowledge transfer

artículo científico publicado en 2018

High rates of bacterial vaginosis and Chlamydia in a low-income, high-population-density community in Cape Town

High-depth African genomes inform human migration and health

artículo científico publicado en 2020

Host and Microbiome Genome-Wide Association Studies: Current State and Challenges

artículo científico publicado en 2018

Hoë voorkomskoers van bakteriële vaginose en Chlamydia in ’n lae-inkomste, hoë-bevolkingsdigtheid gemeenskap in Kaapstad

Hypothalamic-pituitary-adrenal axis suppression in asthma: A glucocorticoid receptor polymorphism may protect

scientific article published on 24 September 2020

Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences

Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence

artículo científico publicado en 2016

Impact of effective contact rate and post treatment immune status on population tuberculosis infection and disease using a mathematical model

article

In Silico Characterization of Proteins InterPro and Proteome Analysis

In silico characterization of proteins: UniProt, InterPro and Integr8.

artículo científico publicado en 2007

Information content-based Gene Ontology functional similarity measures: which one to use for a given biological data type?

artículo científico publicado en 2014

Information content-based gene ontology semantic similarity approaches: toward a unified framework theory

artículo científico publicado en 2013

Initial sequencing and analysis of the human genome

artículo científico publicado en 2001

Integrated molecular characterisation of the MAPK pathways in human cancers reveals pharmacologically vulnerable mutations and gene dependencies

artículo científico publicado en 2021

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

artículo científico publicado en 2004

Integrative landscape of dysregulated signaling pathways of clinically distinct pancreatic cancer subtypes

InterPro

article

InterPro and InterProScan: tools for protein sequence classification and comparison

artículo científico publicado en 2007

InterPro and Proteome Analysis — In silico Analysis of Proteins and Proteomes

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

InterPro in 2011: new developments in the family and domain prediction database

artículo científico publicado en 2012

InterPro, progress and status in 2005

artículo científico publicado en 2005

InterPro--an integrated documentation resource for protein families, domains and functional sites

artículo científico publicado en 2000

InterPro: an integrated documentation resource for protein families, domains and functional sites

artículo científico publicado en 2002

InterPro: the integrative protein signature database

artículo científico publicado en 2009

Investigating the effect of paralogs on microarray gene-set analysis

artículo científico publicado en 2011

Large-scale data-driven integrative framework for extracting essential targets and processes from disease-associated gene data sets

artículo científico publicado en 2017

Latent Tuberculosis: Models, Computational Efforts and the Pathogen's Regulatory Mechanisms during Dormancy

artículo científico publicado en 2013

Leveraging crowdsourcing to accelerate global health solutions

scientific article published on 01 August 2019

Machine Learning and Network Analyses Reveal Disease Subtypes of Pancreatic Cancer and their Molecular Characteristics

scientific article published on 27 January 2020

Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation

artículo científico

Metabolic gene alterations impact the clinical aggressiveness and drug responses of 32 human cancers

scientific article published on 14 November 2019

Microbial Composition Predicts Genital Tract Inflammation and Persistent Bacterial Vaginosis in South African Adolescent Females

artículo científico publicado en 2017

Microbial function and genital inflammation in young South African women at high risk of HIV infection

artículo científico publicado en 2020

Modelling the risk of airborne infectious disease using exhaled air.

artículo científico publicado en 2015

MyDas, an extensible Java DAS server

artículo científico publicado en 2012

New developments in the InterPro database

artículo científico publicado en 2007

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience

scholarly article published 18 April 2018

Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience ⬇️

scientific article published on 18 April 2018

PPI layouts: BioJS components for the display of Protein-Protein Interactions

artículo científico publicado en 2014

Population-specific common SNPs reflect demographic histories and highlight regions of genomic plasticity with functional relevance

artículo científico publicado en 2014

Predicting and analyzing interactions between Mycobacterium tuberculosis and its human host

artículo científico publicado en 2013

Proceedings of a Sickle Cell Disease Ontology workshop - Towards the first comprehensive ontology for Sickle Cell Disease

artículo científico publicado en 2016

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity

artículo científico publicado en 2010

Proposed minimum information guideline for kidney disease-research and clinical data reporting: a cross-sectional study

scientific article published on 26 November 2019

Protein Family Databases

Protein Function Microarrays: Design, Use and Bioinformatic Analysis in Cancer Biomarker Discovery and Quantitation

Protein domain architectures

artículo científico publicado en 2010

Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry

artículo científico publicado en 2016

Real-Time Investigation of Tuberculosis Transmission: Developing the Respiratory Aerosol Sampling Chamber (RASC)

artículo científico publicado en 2016

Recent advances in predicting gene-disease associations

artículo científico publicado en 2017

Research capacity. Enabling the genomic revolution in Africa

artículo científico publicado en 2014

Scoring Protein Relationships in Functional Interaction Networks Predicted from Sequence Data ⬇️

artículo científico publicado el 19 de abril de 2011

Sickle cell disease: tipping the balance of genomic research to catalyse discoveries in Africa

artículo científico publicado en 2017

SickleInAfrica

scientific article published on 01 February 2020

Strategies and opportunities for promoting bioinformatics in Zimbabwe

artículo científico publicado en 2018

Ten simple rules for developing bioinformatics capacity at an academic institution

artículo científico publicado en 2021

Ten simple rules for forming a scientific professional society

artículo científico publicado en 2017

Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries

artículo científico publicado en 2021

Ten simple rules for organizing a webinar series

scientific article published on 01 April 2019

The African Genomic Medicine Training Initiative (AGMT): Showcasing a Community and Framework Driven Genomic Medicine Training for Nurses in Africa

artículo científico publicado en 2019

The Data Use Ontology to streamline responsible access to human biomedical datasets

artículo científico publicado en 2021

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt

artículo científico publicado en 2016

The European Bioinformatics Institute's data resources.

artículo científico publicado en 2003

The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

artículo científico

The H3Africa policy framework: negotiating fairness in genomics

artículo científico publicado en 2015

The Influence of HIV on the Evolution of Mycobacterium tuberculosis

artículo científico publicado en 2017

The InterPro Database and Tools for Protein Domain Analysis

The InterPro database and tools for protein domain analysis

artículo científico publicado en 2008

The InterPro database, 2003 brings increased coverage and new features

artículo científico publicado en 2003

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

artículo científico publicado en 2001

The Mycobacterium tuberculosis mysB gene product is a functional equivalent of the Escherichia coli sigma factor, KatF

scientific journal article

The Proteome Analysis database: a tool for the in silico analysis of whole proteomes

artículo científico publicado en 2003

The Sickle Cell Disease Ontology: Enabling Collaborative Research and Co-Designing of New Planetary Health Applications

artículo científico publicado en 2020

The development and application of bioinformatics core competencies to improve bioinformatics training and education

artículo científico publicado en 2018

The minimum information required for reporting a molecular interaction experiment (MIMIx).

artículo científico publicado en 2007

The transcriptional landscape of the mammalian genome

artículo científico publicado en 2005

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

artículo científico publicado en 2014

Tools and resources for identifying protein families, domains and motifs

artículo científico publicado en 2002

Understanding TB latency using computational and dynamic modelling procedures

artículo científico publicado en 2012

Use of big data and machine learning methods in monitoring and evaluation of digital health programs : An exploratory protocol in the Indian setting (Preprint)

article

Using Whole Genome Sequencing in an African Subphenotype of Myasthenia Gravis to Generate a Pathogenetic Hypothesis

artículo científico publicado en 2019

Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa

artículo científico publicado en 2021

Using biological networks to improve our understanding of infectious diseases

artículo científico publicado en 2014

Using the underlying biological organization of the Mycobacterium tuberculosis functional network for protein function prediction ⬇️

artículo científico publicado el 7 de noviembre de 2011

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.

artículo científico publicado en 2017

[InterPro as a new tool for whole genome analysis. A comparative analysis of Mycobacterium tuberculosis, Bacillus subtilis and Escherichia coli as a case study]

artículo científico publicado en 2006

ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations

artículo científico publicado en 2015

iAnn: an event sharing platform for the life sciences

artículo científico publicado en 2013

myKaryoView: a light-weight client for visualization of genomic data

artículo científico publicado en 2011

Lista de obras de Nicola Mulder

A Genomic and Protein-Protein Interaction Analyses of Nonsyndromic Hearing Impairment in Cameroon Using Targeted Genomic Enrichment and Massively Parallel Sequencing.

A Quantitative Approach to Analyzing Genome Reductive Evolution Using Protein-Protein Interaction Networks: A Case Study of Mycobacterium leprae

A Topology-Based Metric for Measuring Term Similarity in the Gene Ontology ⬇️

A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study

A comprehensive survey of models for dissecting local ancestry deconvolution in human genome

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations

A global perspective on bioinformatics training needs

A mathematical representation of the development of Mycobacterium tuberculosis active, latent and dormant stages ⬇️

A multi-scenario genome-wide medical population genetics simulation framework.

A quick guide for building a successful bioinformatics community

A review of clinical pharmacogenetics Studies in African populations

A systems-level analysis of drug-target-disease associations for drug repositioning

A web-based protein interaction network visualizer

A-DaGO-Fun: an adaptable Gene Ontology semantic similarity-based functional analysis tool

A19 The impact of HIV-1 on the evolution of Mycobacterium tuberculosis.

ANIMA: Association Network Integration for Multiscale Analysis

ANIMA: Association network integration for multiscale analysis

Accessing Biospecimens from the H3Africa Consortium.

Accumulation of splice variants and transcripts in response to PI3K inhibition in T cells

Advancing the international data science workforce through shared training and education

Afri-Can Forum 2 : Johannesburg, South Africa. 16-18 February 2015

Analysis of Duplicate Gene Families in Microbial Genomes and Application to the Study of Gene Duplication in M. tuberculosis

Applications of InterPro in protein annotation and genome analysis

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB's Education Committee).

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

Bamako 2009 conference on the bioinformatics of infectious diseases

Best practices in bioinformatics training for life scientists

Bioinformatics education--perspectives and challenges out of Africa

Biotechnology Innovators To Convene in Cape Town, South Africa: Pharmacogenetics and Precision Medicine Conference (April 7-9, 2016).

Change on the fly: using machine learning in the monitoring and evaluation of digital health programs to improve evidence generation and implementation in real time (Preprint)

Characterization of a Mycobacterium tuberculosis homologue of the Streptomyces coelicolor whiB gene.

Classification of proteins into families

Co-infection with Mycobacterium tuberculosis and human immunodeficiency virus: an overview and motivation for systems approaches

Comparative analysis of microbial genomes to study unique and expanded gene families in Mycobacterium tuberculosis.

Contribution of microarray data to the advancement of knowledge on the Mycobacterium tuberculosis interactome: Use of the random partial least squares approach

Correction: GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training

Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana

DAS writeback: a collaborative annotation system ⬇️

DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures

Dasty3, a WEB framework for DAS.

Data acquisition and data/knowledge sharing in global genomic studies

Designing a course model for distance-based online bioinformatics training in Africa: The H3ABioNet experience

Determining ancestry proportions in complex admixture scenarios in South Africa using a novel proxy ancestry selection method

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics

Development of Bioinformatics Infrastructure for Genomics Research in H3Africa.

Development to enable precision medicine in Africa

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

Does having a mobile phone matter? Linking phone access among women to health in India: An exploratory analysis of the National Family Health Survey

Editorial: The Genetic and Environmental Basis for Diseases in Understudied Populations

Environmental and social factors impacting on epidemic and endemic tuberculosis: a modelling analysis

Ethical and practical issues to consider in the governance of genomic and human research data and data sharing in South Africa: a meeting report

Feeding-Related Gut Microbial Composition Associates With Peripheral T-Cell Activation and Mucosal Gene Expression in African Infants.

Four simple recommendations to encourage best practices in research software

From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems ⬇️

Function prediction and analysis of mycobacterium tuberculosis hypothetical proteins

GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training

GenGraph: a python module for the simple generation and manipulation of genome graphs

Gene Ontology semantic similarity tools: survey on features and challenges for biological knowledge discovery

Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification

Genetic modifiers of long-term survival in sickle cell anemia

Genome-Wide Association Study of Brain Connectivity Changes for Alzheimer's Disease

Genome-wide association study of ancestry-specific TB risk in the South African Coloured population

Genomic Research Data Generation, Analysis and Sharing – Challenges in the African Setting

Getting the most out of protein family classification resources

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa.

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

H3ABioNet: Developing Sustainable Bioinformatics Capacity in Africa

HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort.

Hackathons as a means of accelerating scientific discoveries and knowledge transfer

High rates of bacterial vaginosis and Chlamydia in a low-income, high-population-density community in Cape Town

High-depth African genomes inform human migration and health

Host and Microbiome Genome-Wide Association Studies: Current State and Challenges

Hoë voorkomskoers van bakteriële vaginose en Chlamydia in ’n lae-inkomste, hoë-bevolkingsdigtheid gemeenskap in Kaapstad

Hypothalamic-pituitary-adrenal axis suppression in asthma: A glucocorticoid receptor polymorphism may protect

Identification of All Exact and Approximate Inverted Repeats in Regular and Weighted Sequences

Identification of Quantitative Proteomic Differences between Mycobacterium tuberculosis Lineages with Altered Virulence

Impact of effective contact rate and post treatment immune status on population tuberculosis infection and disease using a mathematical model

In Silico Characterization of Proteins InterPro and Proteome Analysis

In silico characterization of proteins: UniProt, InterPro and Integr8.