Lista de obras - David J. Lynn - Dominio Público Uruguay

A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23.

artículo científico publicado en 2016

A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility

artículo científico publicado en 2013

A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

artículo científico publicado en 2005

Analysis and Visualization of Dynamic Networks Using the DyNet App for Cytoscape

scientific article published on 31 August 2018

Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma

artículo científico publicado en 2018

Avian beta-defensin nomenclature: a community proposed update

artículo científico publicado en 2007

Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes.

artículo científico publicado en 2010

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

artículo científico publicado en 2015

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

artículo científico publicado en 2016

Contrasting evolution of diversity at two disease-associated chicken genes

artículo científico publicado en 2009

Detecting the effects of selection at the population level in six bovine immune genes

artículo científico publicado en 2008

Discovery of alpha-defensins in basal mammals

artículo científico publicado en 2007

DyNet: visualization and analysis of dynamic molecular interaction networks

artículo científico publicado en 2016

Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion

artículo científico publicado en 2018

Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria

artículo científico publicado en 2012

Erratum to: 'Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis'.

artículo científico publicado en 2015

Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

artículo científico publicado en 2009

Evidence of positive selection on the Atlantic salmon CD3γδ gene

article

Evidence of positively selected sites in mammalian alpha-defensins

artículo científico publicado en 2004

Fatty acid oxidation is an adaptive survival pathway induced in prostate tumors by heat shock protein 90 inhibition

artículo científico publicado en 2020

Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma

scientific article published on 27 July 2018

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland

artículo científico publicado en 2012

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

artículo científico publicado en 2009

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

artículo científico publicado en 2012

HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

artículo científico publicado en 2016

Identification of a human neonatal immune-metabolic network associated with bacterial infection

artículo científico publicado en 2014

Identification of novel response and predictive biomarkers to Hsp90 inhibitors through mass spectrometry-based proteomic profiling of patient-derived prostate tumor explants.

artículo científico publicado en 2018

In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs)

scientific article published on 01 June 2003

Induction of a novel chicken Toll-like receptor following Salmonella enterica serovar Typhimurium infection.

artículo científico publicado en 2006

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

artículo científico publicado en 2008

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

artículo científico publicado en 2012

Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis

artículo científico publicado en 2015

Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever

artículo científico publicado en 2016

Linkage mapping of the locus for inherited ovine arthrogryposis (IOA) to sheep Chromosome 5

artículo científico publicado en 2007

Messenger RNA sequence rather than protein sequence determines the level of self-synthesis and antigen presentation of the EBV-encoded antigen, EBNA1.

artículo científico publicado en 2012

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

artículo científico publicado en 2015

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model

artículo científico publicado en 2014

Modification of chicken avian beta-defensin-8 at positively selected amino acid sites enhances specific antimicrobial activity.

artículo científico publicado en 2007

Network Visualization and Analysis of Spatially Aware Gene Expression Data with InsituNet

article

Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection

artículo científico publicado en 2013

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

artículo científico publicado en 2011

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

artículo científico publicado en 2013

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq

artículo científico publicado en 2013

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

artículo científico publicado en 2012

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

artículo científico publicado en 2012

Retinal Pigment Epithelial Cells are a Potential Reservoir for Ebola Virus in the Human Eye.

artículo científico publicado en 2017

The bovine lactation genome: insights into the evolution of mammalian milk

artículo científico publicado en 2009

The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults

artículo científico publicado en 2010

The genome sequence of taurine cattle: a window to ruminant biology and evolution

artículo científico publicado en 2009

The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption

artículo científico publicado en 2011

The imprinted retrotransposon-like gene PEG11 (RTL1) is expressed as a full-length protein in skeletal muscle from Callipyge sheep

artículo científico publicado en 2010

The miRNAome of the postpartum dairy cow liver in negative energy balance

artículo científico publicado en 2014

The non-specific and sex-differential effects of vaccines

artículo científico publicado en 2020

The potential of the microbiota to influence vaccine responses.

artículo científico

The synthetic form of a novel chicken beta-defensin identified in silico is predominantly active against intestinal pathogens

artículo científico publicado en 2005

Towards a unified open access dataset of molecular interactions

artículo científico publicado en 2020

Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi

artículo científico publicado en 2009

Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology

artículo científico publicado en 2012

Using biological networks to integrate, visualize and analyze genomics data

artículo científico publicado en 2016

Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs

artículo científico publicado en 2017

Whole blood gene expression profiling of neonates with confirmed bacterial sepsis

artículo científico publicado en 2014

Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.

artículo científico publicado en 2017

Zika Virus Infection of Human Iris Pigment Epithelial Cells

artículo científico publicado en 2021

Lista de obras de David J. Lynn

A genome-wide association study for genetic susceptibility to Mycobacterium bovis infection in dairy cattle identifies a susceptibility QTL on chromosome 23.

A genome-wide association study for somatic cell score using the Illumina high-density bovine beadchip identifies several novel QTL potentially related to mastitis susceptibility

A genomics approach to the detection of positive selection in cattle: adaptive evolution of the T-cell and natural killer cell-surface protein CD2.

Analysis and Visualization of Dynamic Networks Using the DyNet App for Cytoscape

Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma

Avian beta-defensin nomenclature: a community proposed update

Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes.

CerebralWeb: a Cytoscape.js plug-in to visualize networks stratified by subcellular localization

Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks

Contrasting evolution of diversity at two disease-associated chicken genes

Detecting the effects of selection at the population level in six bovine immune genes

Discovery of alpha-defensins in basal mammals

DyNet: visualization and analysis of dynamic molecular interaction networks

Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion

Effective adjunctive therapy by an innate defense regulatory peptide in a preclinical model of severe malaria

Erratum to: 'Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis'.

Evidence of balanced diversity at the chicken interleukin 4 receptor alpha chain locus

Evidence of positive selection on the Atlantic salmon CD3γδ gene

Evidence of positively selected sites in mammalian alpha-defensins

Fatty acid oxidation is an adaptive survival pathway induced in prostate tumors by heat shock protein 90 inhibition

Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma

Genome-wide associations for milk production and somatic cell score in Holstein-Friesian cattle in Ireland

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis

HiQuant: Rapid Postquantification Analysis of Large-Scale MS-Generated Proteomics Data.

Identification of a human neonatal immune-metabolic network associated with bacterial infection

Identification of novel response and predictive biomarkers to Hsp90 inhibitors through mass spectrometry-based proteomic profiling of patient-derived prostate tumor explants.

In silico identification of components of the Toll-like receptor (TLR) signaling pathway in clustered chicken expressed sequence tags (ESTs)

Induction of a novel chicken Toll-like receptor following Salmonella enterica serovar Typhimurium infection.

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation

Integrated analysis of the local and systemic changes preceding the development of post-partum cytological endometritis

Interferon-driven alterations of the host's amino acid metabolism in the pathogenesis of typhoid fever

Linkage mapping of the locus for inherited ovine arthrogryposis (IOA) to sheep Chromosome 5

Messenger RNA sequence rather than protein sequence determines the level of self-synthesis and antigen presentation of the EBV-encoded antigen, EBNA1.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model

Modification of chicken avian beta-defensin-8 at positively selected amino acid sites enhances specific antimicrobial activity.

Network Visualization and Analysis of Spatially Aware Gene Expression Data with InsituNet

Next generation sequencing reveals the expression of a unique miRNA profile in response to a gram-positive bacterial infection

PSICQUIC and PSISCORE: accessing and scoring molecular interactions

Pathway-GPS and SIGORA: identifying relevant pathways based on the over-representation of their gene-pair signatures.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq

Protein interaction data curation: the International Molecular Exchange (IMEx) consortium

RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance

Retinal Pigment Epithelial Cells are a Potential Reservoir for Ebola Virus in the Human Eye.

The bovine lactation genome: insights into the evolution of mammalian milk

The early whole-blood transcriptional signature of dengue virus and features associated with progression to dengue shock syndrome in Vietnamese children and young adults

The genome sequence of taurine cattle: a window to ruminant biology and evolution

The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption

The imprinted retrotransposon-like gene PEG11 (RTL1) is expressed as a full-length protein in skeletal muscle from Callipyge sheep

The miRNAome of the postpartum dairy cow liver in negative energy balance

The non-specific and sex-differential effects of vaccines

The potential of the microbiota to influence vaccine responses.

The synthetic form of a novel chicken beta-defensin identified in silico is predominantly active against intestinal pathogens

Towards a unified open access dataset of molecular interactions

Transcriptional response in the peripheral blood of patients infected with Salmonella enterica serovar Typhi

Transcriptomic analysis of the stress response to weaning at housing in bovine leukocytes using RNA-seq technology

Using biological networks to integrate, visualize and analyze genomics data

Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs

Whole blood gene expression profiling of neonates with confirmed bacterial sepsis

Whole exome sequencing implicates eye development, the unfolded protein response and plasma membrane homeostasis in primary open-angle glaucoma.

Zika Virus Infection of Human Iris Pigment Epithelial Cells