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Lista de obras de Luciano Milanesi

A Machine Learning Approach for the Integration of miRNA-Target Predictions

artículo científico publicado en 2016

A data integration approach for cell cycle analysis oriented to model simulation in systems biology

artículo científico publicado en 2007

A diethylpyrocarbonate-based derivatization method for the LC-MS/MS measurement of plasma arginine and its chemically related metabolites and analogs

artículo científico publicado en 2019

A fast job scheduling system for a wide range of bioinformatic applications

scientific article published on 01 June 2007

A grid portal with robot certificates for bioinformatics phylogenetic analyses

scholarly article by Roberto Barbera et al published 22 November 2010 in Concurrency and Computation: Practice and Experience

A hybrid genetic-neural system for predicting protein secondary structure

artículo científico publicado en 2005

A multilevel data integration resource for breast cancer study

artículo científico publicado en 2010

A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.

artículo científico publicado en 2016

A novel polymorphism in SEL1L confers susceptibility to Alzheimer's disease

artículo científico publicado en 2006

A rare genetic variant of BPIFB4 predisposes to high blood pressure via impairment of nitric oxide signaling.

artículo científico publicado en 2017

A single amino acid substitution confers B-cell clonogenic activity to the HIV-1 matrix protein p17.

artículo científico publicado en 2017

A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units

artículo científico publicado en 2014

Agents in bioinformatics, computational and systems biology

artículo científico publicado en 2006

An agent-based multilayer architecture for bioinformatics grids

artículo científico

An atomistic view of Hsp70 allosteric crosstalk: from the nucleotide to the substrate binding domain and back

artículo científico publicado en 2016

Analysis of donor splice sites in different eukaryotic organisms ⬇️

artículo científico publicado el 1 de julio de 1997

Antarctic marine ciliates under stress: superoxide dismutases from the psychrophilic Euplotes focardii are cold-active yet heat tolerant enzymes

artículo científico publicado en 2018

Assessment of haptoglobin alleles in autism spectrum disorders

artículo científico publicado en 2020

Association Analysis of Noncoding Variants in Neuroligins 3 and 4X Genes with Autism Spectrum Disorder in an Italian Cohort

artículo científico publicado en 2016

Association study on long-living individuals from Southern Italy identifies rs10491334 in the CAMKIV gene that regulates survival proteins.

artículo científico publicado en 2011

Author Correction: A rare genetic variant of BPIFB4 predisposes to high blood pressure via impairment of nitric oxide signaling

scientific article published on 28 June 2019

BITS 2015: the annual meeting of the Italian Society of Bioinformatics

artículo científico publicado en 2016

Biowep: a workflow enactment portal for bioinformatics applications

artículo científico publicado en 2007

Blood microRNA changes in depressed patients during antidepressant treatment.

artículo científico publicado en 2012

CYCLONET--an integrated database on cell cycle regulation and carcinogenesis

artículo científico publicado en 2007

Calcium kidney stones are associated with a haplotype of the calcium-sensing receptor gene regulatory region

article

Characterization and fine localization of two new genes in Xq28 using the genomic sequence/EST database screening approach

artículo científico publicado en 1996

Cloud infrastructures for in silico drug discovery: economic and practical aspects

artículo científico publicado en 2013

Computational modeling of the metabolic States regulated by the kinase akt

artículo científico publicado en 2012

Decreased transcriptional activity of calcium-sensing receptor gene promoter 1 is associated with calcium nephrolithiasis.

artículo científico publicado en 2013

Diffusion of information throughout the host interactome reveals gene expression variations in network proximity to target proteins of hepatitis C virus

artículo científico publicado en 2014

DnaK as Antibiotic Target: Hot Spot Residues Analysis for Differential Inhibition of the Bacterial Protein in Comparison with the Human HSP70

artículo científico publicado en 2015

Durum wheat genome highlights past domestication signatures and future improvement targets

artículo científico publicado en 2019

ESTMAP: a system for expressed sequence tags mapping on genomic sequences

artículo científico publicado en 2003

ESTree db: a tool for peach functional genomics

artículo científico publicado en 2005

ESTuber db: an online database for Tuber borchii EST sequences

artículo científico publicado en 2007

Environment, dysbiosis, immunity and sex-specific susceptibility: a translational hypothesis for regressive autism pathogenesis

artículo científico publicado en 2015

Exome sequencing identifies variants in two genes encoding the LIM-proteins NRAP and FHL1 in an Italian patient with BAG3 myofibrillar myopathy.

artículo científico publicado en 2016

Exploring the role of the phospholipid ligand in endothelial protein C receptor: a molecular dynamics study.

artículo científico publicado en 2010

FGF2 and EGF Are Required for Self-Renewal and Organoid Formation of Canine Normal and Tumor Breast Stem Cells.

artículo científico publicado en 2016

Fine mapping of AHI1 as a schizophrenia susceptibility gene: from association to evolutionary evidence

artículo científico publicado en 2010

Frailness and resilience of gene networks predicted by detection of co-occurring mutations via a stochastic perturbative approach

scientific article published on 14 February 2020

Further Insights in the Binding Mode of Selective Inhibitors to Human PDE4D Enzyme Combining Docking and Molecular Dynamics.

scientific article published on 20 June 2016

G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods.

artículo científico publicado en 2015

GPU-BSM: a GPU-based tool to map bisulfite-treated reads

artículo científico publicado en 2014

Genome Sequence of Rhodococcus opacus Strain R7, a Biodegrader of Mono- and Polycyclic Aromatic Hydrocarbons

artículo científico publicado en 2014

Genome and Phenotype Microarray Analyses of Rhodococcus sp. BCP1 and Rhodococcus opacus R7: Genetic Determinants and Metabolic Abilities with Environmental Relevance

artículo científico publicado en 2015

Genome-based analysis for the identification of genes involved in o-xylene degradation in Rhodococcus opacus R7

article

Grid Based Genome Wide Studies on Atrial Flutter

Grid methodology for identifying co-regulated genes and transcription factor binding sites

artículo científico publicado en 2007

Grid-enabled high-throughput in silico screening against influenza A neuraminidase.

artículo científico

Guest Editorial: Special Section on Grid, Web Services, Software Agents, and Ontology Applications for Life Sciences

scholarly article by Luciano Milanesi et al published June 2007 in IEEE Transactions on NanoBioscience

Guidelines for managing data and processes in bone and cartilage tissue engineering

artículo científico publicado en 2014

HPC Analysis of Multiple Binding Sites Communication and Allosteric Modulations in Drug Design: The HSP Case Study

artículo científico publicado en 2015

Heparin and heparan sulfate proteoglycans promote HIV-1 p17 matrix protein oligomerization: computational, biochemical and biological implications

scientific article published on 31 October 2019

Homology modeling in tandem with 3D-QSAR analyses: A computational approach to depict the agonist binding site of the human CB2 receptor

artículo científico publicado en 2011

Homology modeling, docking studies and molecular dynamic simulations using graphical processing unit architecture to probe the type-11 phosphodiesterase catalytic site: a computational approach for the rational design of selective inhibitors

artículo científico publicado en 2013

How computer science can help in understanding the 3D genome architecture

artículo científico

Human aryl-hydrocarbon receptor and its interaction with dioxin and physiological ligands investigated by molecular modelling and docking simulations

artículo científico publicado en 2011

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis

artículo científico publicado en 2012

Identification of a U7snRNA homologue mapping to the human Xq27.1 region, between the DXS1232 and DXS119 loci

artículo científico publicado en 1997

Image-based surface matching algorithm oriented to structural biology

artículo científico publicado en 2011

Inhibition of histone methyltransferase DOT1L silences ERα gene and blocks proliferation of antiestrogen-resistant breast cancer cells

article

Integrating multi-omic features exploiting Chromosome Conformation Capture data.

artículo científico publicado en 2015

LAV-BPIFB4 isoform modulates eNOS signalling through Ca2+/PKC-alpha-dependent mechanism

artículo científico publicado en 2017

Large-scale profiling of signalling pathways reveals an asthma specific signature in bronchial smooth muscle cells

artículo científico publicado en 2016

Literature retrieval and mining in bioinformatics: state of the art and challenges

artículo científico publicado en 2012

Medical informatics and bioinformatics: a bibliometric study.

artículo científico publicado en 2007

Methods for the integration of multi-omics data: mathematical aspects

artículo científico publicado en 2016

Mining the bovine genome with the "Bovine SNP Retriever".

artículo científico publicado en 2008

Modeling the cell cycle: from deterministic models to hybrid systems.

artículo científico publicado en 2011

Modelling the interaction of steroid receptors with endocrine disrupting chemicals

artículo científico publicado en 2005

Molecular dynamics and docking simulation of a natural variant of Activated Protein C with impaired protease activity: implications for integrin-mediated antiseptic function.

artículo científico publicado en 2013

Molecular interaction studies of HIV-1 matrix protein p17 and heparin: identification of the heparin-binding motif of p17 as a target for the development of multitarget antagonists

artículo científico publicado en 2012

Molecular mechanism of allosteric communication in Hsp70 revealed by molecular dynamics simulations

artículo científico publicado en 2012

Molecular remodeling of potassium channels in fibroblasts from centenarians: a marker of longevity?

artículo científico publicado en 2010

Multi-Level Data Integration and Data Mining in Systems Biology

scholarly article

Multiple alignment through protein secondary-structure information

artículo científico publicado en 2005

Myosin-binding protein C DNA variants in domestic cats (A31P, A74T, R820W) and their association with hypertrophic cardiomyopathy

artículo científico publicado en 2013

Nanoinformatics: developing new computing applications for nanomedicine

artículo científico publicado en 2012

Network Diffusion-Based Prioritization of Autism Risk Genes Identifies Significantly Connected Gene Modules.

artículo científico publicado en 2017

Network diffusion-based analysis of high-throughput data for the detection of differentially enriched modules

artículo científico publicado en 2016

Network-Based Integrative Analysis of Genomics, Epigenomics and Transcriptomics in Autism Spectrum Disorders

artículo científico publicado en 2019

Network-based analysis of omics with multi-objective optimization.

artículo científico publicado en 2013

New insights into selective PDE4D inhibitors: 3-(Cyclopentyloxy)-4-methoxybenzaldehyde O-(2-(2,6-dimethylmorpholino)-2-oxoethyl) oxime (GEBR-7b) structural development and promising activities to restore memory impairment

artículo científico publicado en 2016

NuChart: an R package to study gene spatial neighbourhoods with multi-omics annotations.

artículo científico publicado en 2013

Ochratoxin A as possible factor trigging autism and its male prevalence via epigenetic mechanism.

artículo científico publicado en 2015

Ontological Enrichment of the Genes-to-Systems Breast Cancer Database

article

Ontology-based resources for bioinformatics analysis

Ontology-based, Tissue MicroArray oriented, image centered tissue bank

artículo científico publicado en 2008

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs

artículo científico publicado en 2009

Osteogenic Differentiation of MSC through Calcium Signaling Activation: Transcriptomics and Functional Analysis

artículo científico publicado en 2016

Parallel solutions for voxel-based simulations of reaction-diffusion systems

artículo científico publicado en 2014

Phenotype microarray analysis may unravel genetic determinants of the stress response by Rhodococcus aetherivorans BCP1 and Rhodococcus opacus R7.

artículo científico publicado en 2016

Population Stratification Analysis in Genome-Wide Association Studies

ProCMD: a database and 3D web resource for protein C mutants

artículo científico publicado en 2007

Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences

artículo científico publicado en 1999

Quantitative radionuclide angiocardiography using gold-195m

scientific article published on 01 May 1984

RNA-Generated and Gene-Edited Induced Pluripotent Stem Cells for Disease Modeling and Therapy

artículo científico publicado en 2016

Reconstructing networks of pathways via significance analysis of their intersections

artículo científico publicado en 2008

Removing duplicate reads using graphics processing units

artículo científico publicado en 2016

Representation and modeling of protein surface determinants

artículo científico publicado en 2005

SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.

artículo científico

SNPLims: a data management system for genome wide association studies

artículo científico publicado en 2008

SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.

artículo científico publicado en 2013

SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans

artículo científico publicado en 2016

SYMBIOmatics: synergies in Medical Informatics and Bioinformatics--exploring current scientific literature for emerging topics

artículo científico publicado en 2007

Segmenting the Human Genome into Isochores

artículo científico publicado en 2015

Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.

artículo científico publicado en 2010

Sensitivity analysis for studying the relation between biochemical reactions and metabolic phenotypes.

artículo científico publicado en 2013

Sequence and gene content in 35 kb genomic clone mapping in the human Xq27.1 region.

artículo científico publicado en 1997

Serum BPIFB4 levels classify health status in long-living individuals.

artículo científico publicado en 2015

Specific patterns of PIWI-interacting small noncoding RNA expression in dysplastic liver nodules and hepatocellular carcinoma

scientific article published on 13 July 2016

Speeding Up the Identification of Cystic Fibrosis Transmembrane Conductance Regulator-Targeted Drugs: An Approach Based on Bioinformatics Strategies and Surface Plasmon Resonance.

artículo científico publicado en 2018

Static and dynamic interactions between GALK enzyme and known inhibitors: guidelines to design new drugs for galactosemic patients.

artículo científico publicado en 2013

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.

artículo científico publicado en 2016

Strategies for comparing gene expression profiles from different microarray platforms: application to a case-control experiment

artículo científico

Structural thermal adaptation of β-tubulins from the Antarctic psychrophilic protozoan Euplotes focardii

Study on the Association among Mycotoxins and other Variables in Children with Autism.

artículo científico publicado en 2017

Systems biology of the metabolic network regulated by the Akt pathway

artículo científico

Systems medicine of inflammaging.

artículo científico publicado en 2015

The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes

artículo científico publicado en 2019

The GENIUS Grid Portal and robot certificates: a new tool for e-Science

artículo científico publicado en 2009

The Genome Conformation As an Integrator of Multi-Omic Data: The Example of Damage Spreading in Cancer

artículo científico publicado en 2016

The cell cycle DB: a systems biology approach to cell cycle analysis

artículo científico publicado en 2007

The exon-intron organization of the human X-linked gene (FLN1) encoding actin-binding protein 280.

artículo científico publicado en 1994

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading.

artículo científico publicado en 2017

The role of extracellular matrix in mouse and human corneal neovascularization

artículo científico publicado en 2019

The subclass approach for mutational spectrum analysis: application of the SEM algorithm.

artículo científico publicado en 1998

Transposable Element Insertions in Long Intergenic Non-Coding RNA Genes

artículo científico publicado en 2015

Tubulin folding: the special case of a beta-tubulin isotype from the Antarctic psychrophilic ciliate Euplotes focardii

VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites

artículo científico publicado en 2017

Version VI of the ESTree db: an improved tool for peach transcriptome analysis

artículo científico publicado en 2008

Virtual screening pipeline and ligand modelling for H5N1 neuraminidase.

artículo científico publicado en 2009

Web services and workflow management for biological resources

artículo científico publicado en 2005

[Cyclotrons in medicine. A survey of commercial models and their biomedical applications]

artículo científico publicado en 1986

iSmaRT: a toolkit for a comprehensive analysis of small RNA-Seq data.

artículo científico publicado en 2017

isma: an R package for the integrative analysis of mutations detected by multiple pipelines

artículo científico publicado en 2019

myMIR: a genome-wide microRNA targets identification and annotation tool

article

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