Lista de obras - Sarah A Woodson - Dominio Público Uruguay

A highly sensitive probe for guanine N7 in folded structures of RNA: application to tRNAPhe and Tetrahymena group I intron

artículo científico publicado en 1993

A metastable rRNA junction essential for bacterial 30S biogenesis

artículo científico publicado en 2018

A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly

artículo científico publicado en 2009

A newborn RNA switches its fate

scientific article published on 01 November 2019

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

artículo científico publicado en 2017

Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing

artículo científico publicado en 2015

Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA.

artículo científico publicado en 1991

An improved surface passivation method for single-molecule studies

artículo científico publicado en 2014

Analysis of RNA Folding by Native Polyacrylamide Gel Electrophoresis

article

Analysis of Rate-Determining Conformational Changes during Self-Splicing of theTetrahymenaIntron†

article

Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA.

artículo científico publicado en 2004

Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria

artículo científico publicado en 2016

Assembly line inspection

artículo científico publicado en 2005

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

artículo científico publicado en 2003

Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations

artículo científico publicado en 2012

Association of a group I intron with its splice junction in 50S ribosomes: implications for intron toxicity.

artículo científico publicado en 1997

Biopolymers celebrates 50 years of nucleic acids research

artículo científico publicado en 2013

C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.

artículo científico publicado en 2016

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.

artículo científico publicado en 2019

Charge density of divalent metal cations determines RNA stability

artículo científico publicado en 2007

Charge screening in RNA: an integral route for dynamical enhancements

artículo científico publicado en 2015

Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

artículo científico publicado en 2007

Compact intermediates in RNA folding.

artículo científico publicado en 2010

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

artículo científico publicado en 2004

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

artículo científico publicado en 2008

Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

artículo científico publicado en 1989

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

artículo científico publicado en 2013

Cooperative tertiary interaction network guides RNA folding.

artículo científico publicado en 2012

Counterion Charge Density Determines the Position and Plasticity of RNA Folding Transition States

scientific article published on 30 March 2006

Crowders perturb the entropy of RNA energy landscapes to favor folding

artículo científico publicado en 2013

Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

artículo científico publicado en 2004

DNA sequence specificity of mitomycin cross-linking

artículo científico publicado en 1989

Destabilizing effect of an rRNA stem-loop on an attenuator hairpin in the 5' exon of the Tetrahymena pre-rRNA.

artículo científico publicado en 1998

Differential effects of ribosomal proteins and Mg2+ ions on a conformational switch during 30S ribosome 5'-domain assembly

artículo científico publicado en 2015

Distribution of rRNA introns in the three-dimensional structure of the ribosome

artículo científico publicado en 2002

Dynamic Transition in tRNA is Solvent Induced

article

Dynamics of biological macromolecules: not a simple slaving by hydration water.

artículo científico publicado en 2010

Dynamics of tRNA at different levels of hydration.

artículo científico publicado en 2009

Effect of salt and RNA structure on annealing and strand displacement by Hfq.

artículo científico publicado en 2009

Effect of transcription on folding of the Tetrahymena ribozyme

artículo científico publicado en 2003

Enhanced self-splicing of Physarum polycephalum intron 3 by a second group I intron.

artículo científico publicado en 1995

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

artículo científico publicado en 2016

Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes.

artículo científico publicado en 2017

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’

article

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

artículo científico publicado en 1992

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

artículo científico publicado en 2000

Fluorescence reporters for Hfq oligomerization and RNA annealing

artículo científico publicado en 2015

Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain†

artículo científico publicado en 2000

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

Folding of RNA involves parallel pathways

Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size

artículo científico publicado en 2004

Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures

artículo científico publicado en 2012

Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20.

artículo científico publicado en 2009

Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing

artículo científico publicado en 2012

Hfq chaperone brings speed dating to bacterial sRNA

scholarly article by Andrew Santiago-Frangos published in July 2018

Hfq proximity and orientation controls RNA annealing

artículo científico publicado en 2012

Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation

artículo científico publicado en 2006

In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates.

artículo científico publicado en 2013

Increased ribozyme activity in crowded solutions

artículo científico publicado en 2013

Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo ⬇️

artículo científico publicado el 3 de marzo de 1998

Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

artículo científico publicado en 2004

Ironing out the kinks: splicing and translation in bacteria ⬇️

artículo científico publicado el 1 de mayo de 1998

Light-Triggered RNA Annealing by an RNA Chaperone

artículo científico publicado en 2015

Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space

scientific article published on 19 May 2020

Loop dependence of the stability and dynamics of nucleic acid hairpins

artículo científico publicado en 2007

Macromolecular complexes: how RNA and protein get together.

artículo científico publicado en 1996

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

artículo científico publicado en 1999

Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.

artículo científico publicado en 2011

Maximizing RNA folding rates: a balancing act.

artículo científico publicado en 2000

Metal ion dependence of cooperative collapse transitions in RNA

artículo científico publicado en 2009

Metal ions and RNA folding: a highly charged topic with a dynamic future

artículo científico publicado en 2005

Metals induce transient folding and activation of the twister ribozyme

artículo científico publicado en 2017

Molecular beacons as probes of RNA unfolding under native conditions

artículo científico publicado en 2005

Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme

artículo científico publicado en 2014

Molecular crowding stabilizes folded RNA structure by the excluded volume effect

artículo científico publicado en 2010

Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering

artículo científico publicado en 2010

New era of molecular structure and dynamics from solution scattering experiments ⬇️

artículo científico publicado el 1 de agosto de 2011

Persistence Length Changes Dramatically as RNA Folds

artículo científico publicado en 2005

Perturbed folding kinetics of circularly permuted RNAs with altered topology

artículo científico publicado en 2003

Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq.

artículo científico publicado en 2013

Positive regulation by small RNAs and the role of Hfq

artículo científico publicado en 2010

Preface. Structures of Large RNA Molecules and Their Complexes

artículo científico publicado en 2015

Preferential location of bulged guanosine internal to a G.cntdot.C tract by proton NMR

scientific article published on 01 January 1988

Probing RNA Folding Pathways by RNA Fingerprinting

artículo científico publicado en 2017

Probing RNA folding pathways by RNA fingerprinting.

artículo científico publicado en 2001

Probing the structure of ribosome assembly intermediates in vivo using DMS and hydroxyl radical footprinting

artículo científico publicado en 2016

Protein-guided RNA dynamics during early ribosome assembly.

artículo científico publicado en 2014

Protein-independent Folding Pathway of the 16S rRNA 5′ Domain

artículo científico publicado en 2005

Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence

scientific article published on 01 February 1987

RNA Folding Pathways and the Self-Assembly of Ribosomes ⬇️

artículo científico publicado el 29 de junio de 2011

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

artículo científico publicado en 1998

RNA folding and ribosome assembly

artículo científico publicado en 2008

RNA folding retrospective: lessons from ribozymes big and small

artículo científico publicado en 2015

RNA tertiary interactions mediate native collapse of a bacterial group I ribozyme

artículo científico publicado en 2005

RNase footprinting of protein binding sites on an mRNA target of small RNAs

artículo científico publicado en 2012

Rapid binding and release of Hfq from ternary complexes during RNA annealing

artículo científico publicado en 2011

RbfA and IF3 couple ribosome biogenesis and translation initiation to increase stress tolerance

artículo científico publicado en 2020

Refolding of rRNA exons enhances dissociation of the Tetrahymena intron

artículo científico publicado en 2000

Rendering RNA in 3D

artículo científico publicado en 2012

Requirements for self-splicing of a group I intron from Physarum polycephalum

artículo científico publicado en 1994

Reverse splicing of the Tetrahymena IVS: evidence for multiple reaction sites in the 23S rRNA.

artículo científico publicado en 1995

Ribosomes clear the way for siRNA targeting

artículo científico publicado en 2020

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics

artículo científico publicado en 2001

S16 throws a conformational switch during assembly of 30S 5' domain

artículo científico publicado en 2009

Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast

artículo científico publicado en 2006

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

scientific article published on 01 December 1993

Slow formation of stable complexes during coincubation of minimal rRNA and ribosomal protein S4

artículo científico publicado en 2011

Specific contacts between protein S4 and ribosomal RNA are required at multiple stages of ribosome assembly

artículo científico publicado en 2013

Structural Requirement for Mg2+ Binding in the Group I Intron Core

artículo científico publicado en 2003

Structural analysis of RNA in living cells by in vivo synchrotron X-ray footprinting

artículo científico publicado en 2009

Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization

article

Structural model of an mRNA in complex with the bacterial chaperone Hfq.

artículo científico publicado en 2014

Structural rearrangements linked to global folding pathways of the Azoarcus group I ribozyme

artículo científico publicado en 2009

Structure and assembly of group I introns

artículo científico publicado en 2005

Structure and dynamics of ribosomal RNA.

artículo científico publicado en 1998

Taming free energy landscapes with RNA chaperones

artículo científico publicado en 2010

Tertiary interactions determine the accuracy of RNA folding

artículo científico publicado en 2008

The dynamics of unfolded versus folded tRNA: the role of electrostatic interactions

artículo científico publicado en 2011

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA

artículo científico publicado en 2008

Time-Resolved Hydroxyl Radical Footprinting of RNA with X-Rays

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

artículo científico publicado en 1997

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

artículo científico publicado en 1998

[22] Time-resolved synchrotron X-ray footprinting and its application to RNA folding

artículo científico publicado en 2000

Lista de obras de Sarah A Woodson

A highly sensitive probe for guanine N7 in folded structures of RNA: application to tRNAPhe and Tetrahymena group I intron

A metastable rRNA junction essential for bacterial 30S biogenesis

A minimized rRNA-binding site for ribosomal protein S4 and its implications for 30S assembly

A newborn RNA switches its fate

Acidic C-terminal domains autoregulate the RNA chaperone Hfq

Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing

Alternative secondary structures in the 5' exon affect both forward and reverse self-splicing of the Tetrahymena intervening sequence RNA.

An improved surface passivation method for single-molecule studies

Analysis of RNA Folding by Native Polyacrylamide Gel Electrophoresis

Analysis of Rate-Determining Conformational Changes during Self-Splicing of theTetrahymenaIntron†

Architecture and folding mechanism of the Azoarcus Group I Pre-tRNA.

Arginine Patch Predicts the RNA Annealing Activity of Hfq from Gram-Negative and Gram-Positive Bacteria

Assembly line inspection

Assembly of core helices and rapid tertiary folding of a small bacterial group I ribozyme

Assembly of the five-way junction in the ribosomal small subunit using hybrid MD-Gō simulations

Association of a group I intron with its splice junction in 50S ribosomes: implications for intron toxicity.

Biopolymers celebrates 50 years of nucleic acids research

C-terminal domain of the RNA chaperone Hfq drives sRNA competition and release of target RNA.

Caulobacter crescentus Hfq structure reveals a conserved mechanism of RNA annealing regulation.

Charge density of divalent metal cations determines RNA stability

Charge screening in RNA: an integral route for dynamical enhancements

Communication between RNA folding domains revealed by folding of circularly permuted ribozymes

Compact intermediates in RNA folding.

Compaction of a bacterial group I ribozyme coincides with the assembly of core helices

Concurrent nucleation of 16S folding and induced fit in 30S ribosome assembly

Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

Conserved arginines on the rim of Hfq catalyze base pair formation and exchange

Cooperative tertiary interaction network guides RNA folding.

Counterion Charge Density Determines the Position and Plasticity of RNA Folding Transition States

Crowders perturb the entropy of RNA energy landscapes to favor folding

Cycling of the Sm-like protein Hfq on the DsrA small regulatory RNA

DNA sequence specificity of mitomycin cross-linking

Destabilizing effect of an rRNA stem-loop on an attenuator hairpin in the 5' exon of the Tetrahymena pre-rRNA.

Differential effects of ribosomal proteins and Mg2+ ions on a conformational switch during 30S ribosome 5'-domain assembly

Distribution of rRNA introns in the three-dimensional structure of the ribosome

Dynamic Transition in tRNA is Solvent Induced

Dynamics of biological macromolecules: not a simple slaving by hydration water.

Dynamics of tRNA at different levels of hydration.

Effect of salt and RNA structure on annealing and strand displacement by Hfq.

Effect of transcription on folding of the Tetrahymena ribozyme

Enhanced self-splicing of Physarum polycephalum intron 3 by a second group I intron.

Entropic stabilization of folded RNA in crowded solutions measured by SAXS.

Evolution of protein-coupled RNA dynamics during hierarchical assembly of ribosomal complexes.

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

Fluorescence reporters for Hfq oligomerization and RNA annealing

Folding Mechanism of theTetrahymenaRibozyme P4−P6 Domain†

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

Folding of RNA involves parallel pathways

Folding of the Tetrahymena ribozyme by polyamines: importance of counterion valence and size

Folding path of P5abc RNA involves direct coupling of secondary and tertiary structures

Global stabilization of rRNA structure by ribosomal proteins S4, S17, and S20.

Hexamer to monomer equilibrium of E. coli Hfq in solution and its impact on RNA annealing

Hfq chaperone brings speed dating to bacterial sRNA

Hfq proximity and orientation controls RNA annealing

Hydroxyl radical footprinting in vivo: mapping macromolecular structures with synchrotron radiation

In vivo X-ray footprinting of pre-30S ribosomes reveals chaperone-dependent remodeling of late assembly intermediates.

Increased ribozyme activity in crowded solutions

Integration of the Tetrahymena group I intron into bacterial rRNA by reverse splicing in vivo ⬇️

Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

Ironing out the kinks: splicing and translation in bacteria ⬇️

Light-Triggered RNA Annealing by an RNA Chaperone

Light-controlled twister ribozyme with single-molecule detection resolves RNA function in time and space

Loop dependence of the stability and dynamics of nucleic acid hairpins

Macromolecular complexes: how RNA and protein get together.

Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.

Maximizing RNA folding rates: a balancing act.

Metal ion dependence of cooperative collapse transitions in RNA

Metal ions and RNA folding: a highly charged topic with a dynamic future

Metals induce transient folding and activation of the twister ribozyme

Molecular beacons as probes of RNA unfolding under native conditions

Molecular crowding overcomes the destabilizing effects of mutations in a bacterial ribozyme

Molecular crowding stabilizes folded RNA structure by the excluded volume effect

Multistage collapse of a bacterial ribozyme observed by time-resolved small-angle X-ray scattering

New era of molecular structure and dynamics from solution scattering experiments ⬇️

Persistence Length Changes Dramatically as RNA Folds