Lista de obras - Roy R Chaudhuri - Dominio Público Uruguay

"Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence

artículo científico publicado en 2017

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus

artículo científico publicado en 2016

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

artículo científico publicado en 2010

A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis

artículo científico publicado en 2005

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria

artículo científico publicado en 2006

Activity of Bdellovibrio hit locus proteins, Bd0108 and Bd0109, links Type IVa pilus extrusion/retraction status to prey-independent growth signalling.

artículo científico publicado en 2013

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

artículo científico publicado en 2019

An analysis of type-III secretion gene clusters in Chromobacterium violaceum

artículo científico publicado en 2004

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes

artículo científico publicado en 2005

Bacterial FHA domains: neglected players in the phospho-threonine signalling game?

artículo científico publicado en 2002

Bacterial flagellar diversity in the post-genomic era.

artículo científico publicado en 2005

Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae

artículo científico publicado en 2015

Characterization of ISBth4, a functional new IS231 variant from Bacillus thuringiensis MEX312.

artículo científico publicado en 2009

Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae

artículo científico publicado en 2016

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

artículo científico publicado en 2010

Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605

artículo científico publicado en 2011

Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals

artículo científico publicado en 2013

Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice

artículo científico publicado en 2009

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

artículo científico publicado en 2009

Corrigendum to ‘Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae’ [Veterinary Microbiology 178 (2015) 279–282].

artículo científico publicado en 2015

Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis

artículo científico publicado en 2015

Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States

artículo científico publicado en 2016

Draft Whole-Genome Sequences of 10 Aeromonas Strains from Clinical and Environmental Sources

scientific article published on 25 July 2019

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

artículo científico publicado en 2006

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

artículo científico publicado en 2021

Gene content and diversity of the loci encoding biosynthesis of capsular polysaccharides of the 15 serovar reference strains of Haemophilus parasuis

artículo científico publicado en 2013

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS) ⬇️

artículo científico publicado el 20 de julio de 2013

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91-/- phox Mice

artículo científico publicado en 2016

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

artículo científico publicado en 2007

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

artículo científico publicado en 2014

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival

artículo científico publicado en 2014

Genomic analysis of secretion systems

artículo científico publicado en 2003

Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.

artículo científico publicado en 2005

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

artículo científico publicado en 2015

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae

artículo científico publicado en 2016

Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae

artículo científico publicado en 2015

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom

scientific article published on 30 January 2020

Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12.

artículo científico publicado en 2014

MycoDB: an online database for comparative genomics of the mycobacteria and related organisms

artículo científico

Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages

artículo científico publicado en 2006

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

artículo científico publicado en 2014

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

artículo científico publicado en 2014

Prevalence of pathogenicity island IICFT073 genes among extraintestinal clinical isolates of Escherichia coli

artículo científico publicado en 2005

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

artículo científico publicado en 2019

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome

artículo científico publicado en 2011

Regulators encoded in the Escherichia coli type III secretion system 2 gene cluster influence expression of genes within the locus for enterocyte effacement in enterohemorrhagic E. coli O157:H7.

artículo científico publicado en 2004

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

artículo científico publicado en 2011

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

artículo científico publicado en 2019

Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain

artículo científico publicado en 2017

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms

artículo científico publicado en 2012

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing

artículo científico publicado en 2014

Structure and function of BamE within the outer membrane and the β-barrel assembly machine

artículo científico publicado en 2011

Supramolecular structure in the membrane of Staphylococcus aureus.

artículo científico publicado en 2015

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition

artículo científico publicado en 2004

The evolution of the Escherichia coli phylogeny

artículo científico

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid

scientific article published on 27 September 2019

The origins of acquired immune deficiency syndrome viruses: where and when?

artículo científico publicado en 2001

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

artículo científico publicado en 2008

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis

artículo científico publicado en 2014

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

artículo científico publicado en 2017

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina

artículo científico publicado en 2016

Use of proteins identified through a functional genomic screen to develop a protein subunit vaccine that provides significant protection against virulent Streptococcus suis in pigs

artículo científico publicado en 2017

Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae

artículo científico publicado en 2017

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis

artículo científico publicado en 2015

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

artículo científico publicado en 2004

xBASE, a collection of online databases for bacterial comparative genomics

artículo científico publicado en 2006

xBASE2: a comprehensive resource for comparative bacterial genomics.

artículo científico publicado en 2007

Lista de obras de Roy R Chaudhuri

"Pathotyping" Multiplex PCR Assay for Haemophilus parasuis: a Tool for Prediction of Virulence

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus

A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis

A novel strategy for the identification of genomic islands by comparative analysis of the contents and contexts of tRNA sites in closely related bacteria

Activity of Bdellovibrio hit locus proteins, Bd0108 and Bd0109, links Type IVa pilus extrusion/retraction status to prey-independent growth signalling.

Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580

An analysis of type-III secretion gene clusters in Chromobacterium violaceum

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes

Bacterial FHA domains: neglected players in the phospho-threonine signalling game?

Bacterial flagellar diversity in the post-genomic era.

Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae

Characterization of ISBth4, a functional new IS231 variant from Bacillus thuringiensis MEX312.

Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605

Comprehensive assignment of roles for Salmonella typhimurium genes in intestinal colonization of food-producing animals

Comprehensive identification of Salmonella enterica serovar typhimurium genes required for infection of BALB/c mice

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

Corrigendum to ‘Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae’ [Veterinary Microbiology 178 (2015) 279–282].

Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis

Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States

Draft Whole-Genome Sequences of 10 Aeromonas Strains from Clinical and Environmental Sources

Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture

Gene content and diversity of the loci encoding biosynthesis of capsular polysaccharides of the 15 serovar reference strains of Haemophilus parasuis

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS) ⬇️

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91-/- phox Mice

Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4.

Genome-wide DNA methylation patterns in wild samples of two morphotypes of threespine stickleback (Gasterosteus aculeatus).

Genome-wide high-throughput screening to investigate essential genes involved in methicillin-resistant Staphylococcus aureus Sequence Type 398 survival

Genomic analysis of secretion systems

Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae

Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae

Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom

Multiplex PCR assay for unequivocal differentiation of Actinobacillus pleuropneumoniae serovars 1 to 3, 5 to 8, 10, and 12.

MycoDB: an online database for comparative genomics of the mycobacteria and related organisms

Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages

Phylogenomics of the killer whale indicates ecotype divergence in sympatry.

Population genomics of the killer whale indicates ecotype evolution in sympatry involving both selection and drift.

Prevalence of pathogenicity island IICFT073 genes among extraintestinal clinical isolates of Escherichia coli

Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

Quantitative RNA-seq analysis of the Campylobacter jejuni transcriptome

Regulators encoded in the Escherichia coli type III secretion system 2 gene cluster influence expression of genes within the locus for enterocyte effacement in enterohemorrhagic E. coli O157:H7.

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms

Single-step selection of bivalent aptamers validated by comparison with SELEX using high-throughput sequencing

Structure and function of BamE within the outer membrane and the β-barrel assembly machine

Supramolecular structure in the membrane of Staphylococcus aureus.

The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition

The evolution of the Escherichia coli phylogeny

The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid

The origins of acquired immune deficiency syndrome viruses: where and when?

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

Two Unrelated 8-Vinyl Reductases Ensure Production of Mature Chlorophylls in Acaryochloris marina

Use of proteins identified through a functional genomic screen to develop a protein subunit vaccine that provides significant protection against virulent Streptococcus suis in pigs

Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae

Whole genome investigation of a divergent clade of the pathogen Streptococcus suis

coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.

xBASE, a collection of online databases for bacterial comparative genomics

xBASE2: a comprehensive resource for comparative bacterial genomics.