Lista de obras - Feng-Biao Guo - Dominio Público Uruguay

A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network

scientific article published on 07 October 2016

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

artículo científico publicado en 2009

ACFIS: a web server for fragment-based drug discovery

artículo científico publicado en 2016

Accurate prediction of human essential genes using only nucleotide composition and association information.

artículo científico publicado en 2017

An Approach for Predicting Essential Genes Using Multiple Homology Mapping and Machine Learning Algorithms

artículo científico publicado en 2016

Analysis of nucleotide distribution in the genome of Streptomyces coelicolor A3(2) using the Z curve method.

artículo científico publicado en 2003

Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages

artículo científico publicado en 2014

Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins

artículo científico publicado en 2017

Automatic prediction of non-coding RNA genes in prokaryotes based on compositional statistics

article

BDB: biopanning data bank

artículo científico publicado en 2015

Base Frequencies at the Second Codon Position of Vibrio cholerae Genes Connect with Protein Function

article

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms

scientific article published on 01 December 2020

CEG: a database of essential gene clusters.

artículo científico publicado en 2013

Chromosome translocation and its consequence in the genome of Burkholderia cenocepacia AU-1054

artículo científico publicado en 2010

Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains

artículo científico publicado en 2017

Codon usages of genes on chromosome, and surprisingly, genes in plasmid are primarily affected by strand-specific mutational biases in Lawsonia intracellularis

artículo científico publicado en 2009

Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots

artículo científico publicado en 2016

Comprehensive exploration of the enzymes catalysing oxygen-involved reactions and COGs relevant to bacterial oxygen utilization

artículo científico publicado en 2018

Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference

artículo científico publicado en 2021

Essentiality drives the orientation bias of bacterial genes in a continuous manner

artículo científico publicado en 2015

GS-Finder: a program to find bacterial gene start sites with a self-training method.

artículo científico publicado en 2004

Gene re-annotation in genome of the extremophile Pyrobaculum aerophilum by using bioinformatics methods

artículo científico publicado en 2011

Gene recognition based on nucleotide distribution of ORFs in a hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

artículo científico publicado en 2004

Genomic Complexity Places Less Restrictions on the Evolution of Young Coexpression Networks than Protein-Protein Interactions

artículo científico publicado en 2016

Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny

artículo científico publicado en 2013

IFIM: a database of integrated fitness information for microbial genes

artículo científico publicado en 2014

Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands.

artículo científico publicado en 2017

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

artículo científico publicado en 2011

Identify protein-coding genes in the genomes of Aeropyrum pernix K1 and Chlorobium tepidum TLS.

artículo científico publicado en 2009

Identifying bacterial essential genes based on a feature-integrated method

artículo científico publicado en 2017

Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR.

artículo científico publicado en 2016

MimoDB 2.0: a mimotope database and beyond

artículo científico publicado en 2012

Multiple Factors Drive Replicating Strand Composition Bias in Bacterial Genomes

artículo científico publicado en 2015

PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library

artículo científico publicado en 2014

Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era

artículo científico publicado en 2016

Prediction of genomic islands in three bacterial pathogens of pneumonia.

artículo científico publicado en 2012

Prediction of protein structural classes based on feature selection technique

artículo científico publicado en 2014

Quantitative elucidation of associations between nucleotide identity and physicochemical properties of amino acids and the functional insight

artículo científico publicado en 2021

RIscoper: a tool for RNA-RNA interaction extraction from the literature

scientific article published on 01 September 2019

Re-annotation of protein-coding genes in 10 complete genomes of Neisseriaceae family by combining similarity-based and composition-based methods

artículo científico publicado en 2013

Re-annotation of protein-coding genes in the genome of saccharomyces cerevisiae based on support vector machines.

artículo científico publicado en 2013

Re-prediction of protein-coding genes in the genome of Amsacta moorei entomopoxvirus

artículo científico publicado en 2007

Replicating strand asymmetry in bacterial and eukaryotic genomes.

artículo científico publicado en 2012

SAROTUP: scanner and reporter of target-unrelated peptides

artículo científico publicado en 2010

SMAL: A Resource of Spontaneous Mutation Accumulation Lines.

artículo científico publicado en 2014

SSER: Species specific essential reactions database

artículo científico publicado en 2017

Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method

artículo científico publicado en 2007

Strong Strand Composition Bias in the Genome of Ehrlichia canis Revealed by Multiple Methods

artículo científico publicado en 2010

Strong strand specific composition bias—a genomic character of some obligate parasites or symbionts ⬇️

artículo científico publicado el 1 de octubre de 2011

Three computational tools for predicting bacterial essential genes.

artículo científico publicado en 2015

Transcriptional abundance is not the single force driving the evolution of bacterial proteins

artículo científico publicado en 2013

Universal pattern and diverse strengths of successive synonymous codon bias in three domains of life, particularly among prokaryotic genomes

artículo científico publicado en 2012

ZCURVE 3.0: identify prokaryotic genes with higher accuracy as well as automatically and accurately select essential genes.

artículo científico publicado en 2015

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes

artículo científico publicado en 2003

ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.

artículo científico publicado en 2006

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties.

artículo científico publicado en 2016

Lista de obras de Feng-Biao Guo

A novel proposal of a simplified bacterial gene set and the neo-construction of a general minimized metabolic network

A plot of G + C content against sequence length of 640 bacterial chromosomes shows the points are widely scattered in the upper triangular area.

ACFIS: a web server for fragment-based drug discovery

Accurate prediction of human essential genes using only nucleotide composition and association information.

An Approach for Predicting Essential Genes Using Multiple Homology Mapping and Machine Learning Algorithms

Analysis of nucleotide distribution in the genome of Streptomyces coelicolor A3(2) using the Z curve method.

Analysis of the relationship between genomic GC Content and patterns of base usage, codon usage and amino acid usage in prokaryotes: similar GC content adopts similar compositional frequencies regardless of the phylogenetic lineages

Anti-CRISPRdb: a comprehensive online resource for anti-CRISPR proteins

Automatic prediction of non-coding RNA genes in prokaryotes based on compositional statistics

BDB: biopanning data bank

Base Frequencies at the Second Codon Position of Vibrio cholerae Genes Connect with Protein Function

CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms

CEG: a database of essential gene clusters.

Chromosome translocation and its consequence in the genome of Burkholderia cenocepacia AU-1054

Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains

Codon usages of genes on chromosome, and surprisingly, genes in plasmid are primarily affected by strand-specific mutational biases in Lawsonia intracellularis

Combining pseudo dinucleotide composition with the Z curve method to improve the accuracy of predicting DNA elements: a case study in recombination spots

Comprehensive exploration of the enzymes catalysing oxygen-involved reactions and COGs relevant to bacterial oxygen utilization

Consistent Clustering Pattern of Prokaryotic Genes Based on Base Frequency at the Second Codon Position and its Association with Functional Category Preference

Essentiality drives the orientation bias of bacterial genes in a continuous manner

GS-Finder: a program to find bacterial gene start sites with a self-training method.

Gene re-annotation in genome of the extremophile Pyrobaculum aerophilum by using bioinformatics methods

Gene recognition based on nucleotide distribution of ORFs in a hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Genomic Complexity Places Less Restrictions on the Evolution of Young Coexpression Networks than Protein-Protein Interactions

Geptop: a gene essentiality prediction tool for sequenced bacterial genomes based on orthology and phylogeny

IFIM: a database of integrated fitness information for microbial genes

Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands.

Identify Golgi protein types with modified Mahalanobis discriminant algorithm and pseudo amino acid composition

Identify protein-coding genes in the genomes of Aeropyrum pernix K1 and Chlorobium tepidum TLS.

Identifying bacterial essential genes based on a feature-integrated method

Laribacter hongkongensis anaerobic adaptation mediated by arginine metabolism is controlled by the cooperation of FNR and ArgR.

MimoDB 2.0: a mimotope database and beyond

Multiple Factors Drive Replicating Strand Composition Bias in Bacterial Genomes

PhD7Faster: predicting clones propagating faster from the Ph.D.-7 phage display peptide library

Phylogenomic Analyses and Reclassification of Species within the Genus Tsukamurella: Insights to Species Definition in the Post-genomic Era

Prediction of genomic islands in three bacterial pathogens of pneumonia.

Prediction of protein structural classes based on feature selection technique

Quantitative elucidation of associations between nucleotide identity and physicochemical properties of amino acids and the functional insight

RIscoper: a tool for RNA-RNA interaction extraction from the literature

Re-annotation of protein-coding genes in 10 complete genomes of Neisseriaceae family by combining similarity-based and composition-based methods

Re-annotation of protein-coding genes in the genome of saccharomyces cerevisiae based on support vector machines.

Re-prediction of protein-coding genes in the genome of Amsacta moorei entomopoxvirus

Replicating strand asymmetry in bacterial and eukaryotic genomes.

SAROTUP: scanner and reporter of target-unrelated peptides

SMAL: A Resource of Spontaneous Mutation Accumulation Lines.

SSER: Species specific essential reactions database

Separate base usages of genes located on the leading and lagging strands in Chlamydia muridarum revealed by the Z curve method

Strong Strand Composition Bias in the Genome of Ehrlichia canis Revealed by Multiple Methods

Strong strand specific composition bias—a genomic character of some obligate parasites or symbionts ⬇️

Three computational tools for predicting bacterial essential genes.

Transcriptional abundance is not the single force driving the evolution of bacterial proteins

Universal pattern and diverse strengths of successive synonymous codon bias in three domains of life, particularly among prokaryotic genomes

ZCURVE 3.0: identify prokaryotic genes with higher accuracy as well as automatically and accurately select essential genes.

ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes

ZCURVE_V: a new self-training system for recognizing protein-coding genes in viral and phage genomes.

Zisland Explorer: detect genomic islands by combining homogeneity and heterogeneity properties.