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Lista de obras de Shabaz Mohammed

A PP2A-B55 recognition signal controls substrate dephosphorylation kinetics during mitotic exit.

artículo científico publicado en 2016

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

artículo científico publicado en 2013

A receptor for the complement regulator factor H increases transmission of trypanosomes to tsetse flies

scientific article published on 12 March 2020

A role for PtdIns(4,5)P2 and PIP5Kalpha in regulating stress-induced apoptosis

artículo científico publicado en 2006

A systematic approach to modeling, capturing, and disseminating proteomics experimental data

artículo científico publicado en 2003

A systems-wide screen identifies substrates of the SCF TrCP ubiquitin ligase

artículo científico publicado en 2014

A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions

artículo científico publicado en 2009

A unique residue in rab3c determines the interaction with novel binding protein Zwint-1.

artículo científico publicado en 2008

Activation of FoxM1 during G2 requires cyclin A/Cdk-dependent relief of autorepression by the FoxM1 N-terminal domain

artículo científico publicado en 2008

An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry

artículo científico publicado en 2003

Applications of stable isotope dimethyl labeling in quantitative proteomics

artículo científico publicado en 2012

Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation

scientific article published on 06 May 2009

Atorvastatin modulates the profile of proteins released by human atherosclerotic plaques

artículo científico publicado en 2007

Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity

artículo científico publicado en 2008

Benchmarking stable isotope labeling based quantitative proteomics

artículo científico publicado en 2012

Characterization and usage of the EASY-spray technology as part of an online 2D SCX-RP ultra-high pressure system

artículo científico publicado en 2014

Characterization of biases in phosphopeptide enrichment by Ti(4+)-immobilized metal affinity chromatography and TiO2 using a massive synthetic library and human cell digests

artículo científico publicado en 2014

Characterization of electron transfer dissociation in the Orbitrap Velos HCD cell

artículo científico publicado en 2013

Chemical Proteomics and Phenotypic Profiling Identifies the Aryl Hydrocarbon Receptor as a Molecular Target of the Utrophin Modulator Ezutromid

artículo científico publicado en 2020

Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates.

artículo científico publicado en 2008

Cleavage specificities of the brother and sister proteases Lys-C and Lys-N.

artículo científico publicado en 2010

Collaboration of AMPK and PKC to induce phosphorylation of Ser413 on PIP5K1B resulting in decreased kinase activity and reduced PtdIns(4,5)P2 synthesis in response to oxidative stress and energy restriction

artículo científico publicado en 2013

Combining Deep Sequencing, Proteomics, Phosphoproteomics, and Functional Screens To Discover Novel Regulators of Sphingolipid Homeostasis

artículo científico publicado en 2016

Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response.

artículo científico publicado en 2013

Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos

artículo científico publicado en 2008

Coupled activation and degradation of eEF2K regulates protein synthesis in response to genotoxic stress

artículo científico publicado en 2012

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

artículo científico publicado en 2012

Database independent proteomics analysis of the ostrich and human proteome.

artículo científico publicado en 2011

Datasets from an interaction proteomics screen for substrates of the SCF(βTrCP) ubiquitin ligase

artículo científico

Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.

artículo científico publicado en 2011

Dimer interface of bovine cytochrome c oxidase is influenced by local posttranslational modifications and lipid binding

artículo científico publicado en 2016

Dimethyl isotope labeling assisted de novo peptide sequencing

artículo científico publicado el 21 de agosto de 2010

Doxorubicin-induced DNA damage causes extensive ubiquitination of ribosomal proteins associated with a decrease in protein translation.

artículo científico publicado en 2018

Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation.

artículo científico publicado en 2009

Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment

artículo científico publicado en 2011

Evaluation and Optimization of ZIC-HILIC-RP as an Alternative MudPIT Strategy

article by Paul J. Boersema et al published March 2007 in Journal of Proteome Research

Evaluation of metalloendopeptidase Lys-N protease performance under different sample handling conditions

artículo científico publicado en 2010

Evaluation of the Deuterium Isotope Effect in Zwitterionic Hydrophilic Interaction Liquid Chromatography Separations for Implementation in a Quantitative Proteomic Approach

artículo científico publicado en 2011

Exploring new proteome space: combining Lys-N proteolytic digestion and strong cation exchange (SCX) separation in peptide-centric MS-driven proteomics

artículo científico publicado en 2011

Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer

artículo científico publicado en 2010

Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip

artículo científico publicado en 2012

Generation of a synthetic GlcNAcylated nucleosome reveals regulation of stability by H2A-Thr101 GlcNAcylation

artículo científico publicado en 2015

Genetic Incorporation of Olefin Cross-Metathesis Reaction Tags for Protein Modification

artículo científico publicado en 2018

Global analysis of RNA-binding protein dynamics by comparative and enhanced RNA interactome capture

artículo científico publicado en 2020

Guanidination chemistry for qualitative and quantitative proteomics

artículo científico publicado en 2006

HGF signaling regulates Claudin-3 dynamics through its C-terminal tyrosine residues

artículo científico publicado en 2013

Highly Efficient Depletion Strategy for the Two Most Abundant Erythrocyte Soluble Proteins Improves Proteome Coverage Dramatically

artículo científico publicado en 2008

Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.

artículo científico publicado en 2007

Highly sensitive proteome analysis of FACS-sorted adult colon stem cells

artículo científico publicado en 2011

Hydrophilic interaction liquid chromatography (HILIC) in proteomics.

artículo científico publicado en 2008

Identification of ischemia-regulated phosphorylation sites in connexin43: A possible target for the antiarrhythmic peptide analogue rotigaptide (ZP123).

artículo científico publicado en 2006

Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics

artículo científico publicado en 2010

Improved identification of endogenous peptides from murine nervous tissue by multiplexed peptide extraction methods and multiplexed mass spectrometric analysis

artículo científico publicado en 2009

Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.

artículo científico publicado en 2011

Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.

artículo científico publicado en 2011

Improving depth in phosphoproteomics by using a strong cation exchange-weak anion exchange-reversed phase multidimensional separation approach

artículo científico publicado en 2011

In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse

artículo científico publicado en 2011

In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis

artículo científico publicado en 2012

Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling

artículo científico publicado en 2011

Ligand binding to a G protein-coupled receptor captured in a mass spectrometer

artículo científico publicado en 2017

Light-driven post-translational installation of reactive protein side chains

scientific article published on 23 September 2020

Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach

artículo científico publicado en 2009

LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation

artículo científico publicado en 2010

MAP3K1 functionally interacts with Axin1 in the canonical Wnt signalling pathway.

artículo científico publicado en 2010

Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.

artículo científico publicado en 2006

Monitoring the Disassembly of Virus-like Particles by 19F-NMR.

artículo científico publicado en 2017

Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics

artículo científico publicado en 2009

Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites

artículo científico publicado en 2008

Novel protein phosphorylation site identification in spinach stroma membranes by titanium dioxide microcolumns and tandem mass spectrometry

artículo científico publicado en 2006

Nuclear PtdIns5P as a transducer of stress signaling: an in vivo role for PIP4Kbeta

artículo científico publicado en 2006

Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage

artículo científico publicado en 2017

On the Statistical Significance of Compressed Ratios in Isobaric Labeling: A Cross-Platform Comparison

artículo científico publicado en 2016

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo

artículo científico publicado en 2008

Optimal Synthetic Glycosylation of a Therapeutic Antibody

artículo científico publicado en 2016

Peptide orientation affects selectivity in ion-exchange chromatography

artículo científico publicado en 2010

Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer

artículo científico publicado en 2017

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels

artículo científico publicado en 2010

Phosphopeptide fragmentation and analysis by mass spectrometry

artículo científico publicado en 2009

Phosphoproteomics

artículo científico publicado en 2014

Phosphorylation of Not4p functions parallel to BUR2 to regulate resistance to cellular stresses in Saccharomyces cerevisiae

artículo científico publicado en 2010

Posttranslational mutagenesis: A chemical strategy for exploring protein side-chain diversity.

artículo científico publicado en 2016

Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex.

artículo científico publicado en 2006

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome

artículo científico publicado en 2010

Profiling of diet-induced neuropeptide changes in rat brain by quantitative mass spectrometry

artículo científico publicado en 2013

Protease bias in absolute protein quantitation

artículo científico publicado en 2012

Proteasome-dependent degradation of transcription factor activating enhancer-binding protein 4 (TFAP4) controls mitotic division

artículo científico publicado en 2014

Protein phosphatase 2A (B55α) prevents premature activation of forkhead transcription factor FoxM1 by antagonizing cyclin A/cyclin-dependent kinase-mediated phosphorylation.

artículo científico

Proteome Adaptation of Saccharomyces cerevisiae to Severe Calorie Restriction in Retentostat Cultures

article

Quantitative Map of Proteome Dynamics during Neuronal Differentiation.

artículo científico publicado en 2017

Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis

scientific article published on 21 February 2007

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

artículo científico publicado en 2013

Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway

artículo científico publicado en 2013

Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth

artículo científico publicado en 2013

Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway

artículo científico publicado en 2005

Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E

artículo científico publicado en 2006

Rapid analyses of proteomes and interactomes using an integrated solid-phase extraction-liquid chromatography-MS/MS system

artículo científico publicado en 2014

Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis.

artículo científico

Recovery from a DNA-damage-induced G2 arrest requires Cdk-dependent activation of FoxM1.

artículo científico publicado en 2010

Regulation of retromer recruitment to endosomes by sequential action of Rab5 and Rab7.

artículo científico publicado en 2008

Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography

artículo científico publicado en 2013

RockerBox: analysis and filtering of massive proteomics search results.

artículo científico publicado en 2011

Selective Metal-Site-Guided Arylation of Proteins

artículo científico publicado en 2016

Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins.

artículo científico publicado en 2008

Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry

artículo científico publicado en 2005

Signal Transduction Reaction Monitoring Deciphers Site-Specific PI3K-mTOR/MAPK Pathway Dynamics in Oncogene-Induced Senescence.

artículo científico publicado en 2015

Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase.

artículo científico publicado en 2008

Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase.

artículo científico publicado en 2008

Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications

artículo científico publicado el 12 de octubre de 2010

Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications

artículo científico publicado en 2008

Structural characterization of KKT4, an unconventional microtubule-binding kinetochore protein

artículo científico publicado en 2021

Synthetic Nucleosomes Reveal that GlcNAcylation Modulates Direct Interaction with the FACT Complex

artículo científico publicado en 2016

Synthetic phosphorylation of p38α recapitulates protein kinase activity

artículo científico publicado en 2014

Synthetic post-translational modification of histones

artículo científico publicado en 2018

System-wide analyses of the fission yeast poly(A)+ RNA interactome reveal insights into organization and function of RNA-protein complexes

scientific article published on 18 June 2020

Targeted analysis of protein termini.

artículo científico publicado en 2007

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data

artículo científico publicado en 2013

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers

artículo científico publicado en 2012

The Tyrosine Phosphatase Shp2 Interacts with NPM-ALK and Regulates Anaplastic Lymphoma Cell Growth and Migration

artículo científico publicado en 2007

The anti-sigma factor RsrA responds to oxidative stress by reburying its hydrophobic core

artículo científico publicado en 2016

The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search

artículo científico publicado en 2010

The kinase TNIK is an essential activator of Wnt target genes

artículo científico publicado en 2009

The leukemia-associated Mllt10/Af10-Dot1l are Tcf4/β-catenin coactivators essential for intestinal homeostasis

artículo científico publicado en 2010

The role of the Xist 5' m6A region and RBM15 in X chromosome inactivation

scientific article published on 17 February 2020

Threonine Phosphorylation of IκBζ Mediates Inhibition of Selective Proinflammatory Target Genes

scientific article published on 06 February 2020

Toward a comprehensive characterization of a human cancer cell phosphoproteome.

artículo científico publicado en 2012

Toward an Optimized Workflow for Middle-Down Proteomics

artículo científico publicado en 2017

Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.

artículo científico publicado en 2012

Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates

artículo científico publicado en 2008

Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors

artículo científico publicado en 2012

USP17- and SCFβTrCP--regulated degradation of DEC1 controls the DNA damage response

artículo científico publicado en 2014

Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides.

artículo científico publicado en 2012

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)

artículo científico publicado en 2013

Universal quantitative kinase assay based on diagonal SCX chromatography and stable isotope dimethyl labeling provides high-definition kinase consensus motifs for PKA and human Mps1.

artículo científico publicado en 2013

Wnt signaling through inhibition of β-catenin degradation in an intact Axin1 complex

artículo científico publicado en 2012

ZIC-cHILIC as a fractionation method for sensitive and powerful shotgun proteomics

artículo científico publicado en 2012

Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis

artículo científico publicado en 2011

eIF2 interactions with initiator tRNA and eIF2B are regulated by post-translational modifications and conformational dynamics

artículo científico publicado en 2015

p130Cas mediates the transforming properties of the anaplastic lymphoma kinase

artículo científico publicado en 2005

β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules

artículo científico publicado en 2010