Lista de obras - Alex Graudenzi - Dominio Público Uruguay

A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development

artículo científico

A stochastic model of autocatalytic reaction networks

artículo científico publicado en 2011

A stochastic model of catalytic reaction networks in protocells ⬇️

article

A stochastic model of the emergence of autocatalytic cycles

article

Algorithmic methods to infer the evolutionary trajectories in cancer progression ⬇️

artículo científico publicado en 2016

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

artículo científico publicado en 2016

CAPRI: efficient inference of cancer progression models from cross-sectional data ⬇️

artículo científico publicado en 2015

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

artículo científico publicado en 2015

Distributed delays in a hybrid model of tumor-immune system interplay.

artículo científico

Dynamical properties of a boolean model of gene regulatory network with memory

artículo científico publicado en 2011

GESTODIFFERENT: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process

artículo científico publicado en 2013

Growth and division in a dynamic protocell model

artículo científico publicado en 2014

Inferring tree causal models of cancer progression with probability raising

artículo científico publicado en 2014

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

artículo científico publicado en 2019

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power

artículo científico publicado en 2018

Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model

Investigating the relation between stochastic differentiation, homeostasis and clonal expansion in intestinal crypts via multiscale modeling

artículo científico publicado en 2014

Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data

artículo científico publicado en 2019

Modeling Cumulative Biological Phenomena with Suppes-Bayes Causal Networks.

artículo científico publicado en 2018

On RAF Sets and Autocatalytic Cycles in Random Reaction Networks ⬇️

article published in 2014

Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks

artículo científico publicado en 2012

Preface

Robustness analysis of a Boolean model of gene regulatory network with memory

artículo científico publicado en 2011

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data

artículo científico publicado en 2017

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. ⬇️

artículo científico publicado en 2016

The Diffusion of Perturbations in a Model of Coupled Random Boolean Networks

article

VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples

artículo científico publicado en 2021

Lista de obras de Alex Graudenzi

A review of spatial computational models for multi-cellular systems, with regard to intestinal crypts and colorectal cancer development

A stochastic model of autocatalytic reaction networks

A stochastic model of catalytic reaction networks in protocells ⬇️

A stochastic model of the emergence of autocatalytic cycles

Algorithmic methods to infer the evolutionary trajectories in cancer progression ⬇️

CABeRNET: a Cytoscape app for augmented Boolean models of gene regulatory NETworks

CAPRI: efficient inference of cancer progression models from cross-sectional data ⬇️

CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer

Distributed delays in a hybrid model of tumor-immune system interplay.

Dynamical properties of a boolean model of gene regulatory network with memory

GESTODIFFERENT: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process

Growth and division in a dynamic protocell model

Inferring tree causal models of cancer progression with probability raising

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism

Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power

Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model

Investigating the relation between stochastic differentiation, homeostasis and clonal expansion in intestinal crypts via multiscale modeling

Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data

Modeling Cumulative Biological Phenomena with Suppes-Bayes Causal Networks.

On RAF Sets and Autocatalytic Cycles in Random Reaction Networks ⬇️

Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks

Preface

Robustness analysis of a Boolean model of gene regulatory network with memory

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data

TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data. ⬇️

The Diffusion of Perturbations in a Model of Coupled Random Boolean Networks

VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples