Lista de obras - Maria Suarez-Diez - Dominio Público Uruguay

A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load

artículo científico publicado en 2018

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

artículo científico publicado en 2012

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability.

artículo científico publicado en 2017

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

artículo científico publicado en 2019

Building pathway graphs from BioPAX data in R.

artículo científico publicado en 2016

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

artículo científico publicado en 2016

Cofactors revisited - Predicting the impact of flavoprotein-related diseases on a genome scale

artículo científico publicado en 2018

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

artículo científico publicado en 2017

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

artículo científico publicado en 2016

Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing

artículo científico publicado en 2015

Computational protein design with electrostatic focusing: experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet.

artículo científico publicado en 2013

Consistency, Inconsistency and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome Scale Metabolic Modelling

artículo científico publicado en 2018

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

artículo científico publicado en 2019

Degenerate target sites mediate rapid primed CRISPR adaptation.

artículo científico publicado en 2014

Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.

artículo científico publicado en 2015

From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.

artículo científico publicado en 2014

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

artículo científico publicado en 2013

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

artículo científico publicado en 2021

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

artículo científico publicado en 2017

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

artículo científico publicado en 2021

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

artículo científico publicado en 2016

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

artículo científico publicado en 2019

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

artículo científico publicado en 2019

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

artículo científico publicado en 2014

Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining

Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate

artículo científico publicado en 2017

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

artículo científico publicado en 2014

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

artículo científico publicado en 2021

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

artículo científico publicado en 2020

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation

artículo científico publicado en 2018

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular

artículo científico publicado en 2019

Modeling the Metabolic State of Upon Infection

scholarly article by Rienk A Rienksma et al published 2018 in Frontiers in cellular and infection microbiology

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access

artículo científico publicado en 2018

Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them

artículo científico publicado en 2017

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

artículo científico publicado en 2015

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling

artículo científico publicado en 2017

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

artículo científico publicado en 2017

Probabilistic Networks of Blood Metabolites in Healthy Subjects As Indicators of Latent Cardiovascular Risk

scientific article published on 08 December 2014

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

artículo científico publicado en 2012

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

artículo científico publicado en 2016

Pushing the limits of automatic computational protein design: design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold.

artículo científico publicado en 2011

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

artículo científico publicado en 2015

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

artículo científico publicado en 2018

SALARECON connects the Atlantic salmon genome to growth and feed efficiency

artículo científico publicado en 2022

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

artículo científico publicado en 2017

Screening and characterization of novel specific peptides targeting MDA-MB-231 claudin-low breast carcinoma by computer-aided phage display methodologies

artículo científico publicado en 2016

Simulation and Reconstruction of Metabolite-Metabolite Association Networks Using a Metabolic Dynamic Model and Correlation Based Algorithms

scientific article published on 04 February 2019

SyNDI: synchronous network data integration framework

artículo científico publicado en 2018

Systems Biology in ELIXIR: modelling in the spotlight

artículo científico publicado en 2024

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

artículo científico publicado en 2014

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

scientific article published on 04 November 2019

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

article

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

artículo científico publicado en 2020

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

artículo científico publicado en 2014

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity

artículo científico publicado en 2017

Lista de obras de Maria Suarez-Diez

A Constraint-Based Model Analysis of Enterocyte Mitochondrial Adaptation to Dietary Interventions of Lipid Type and Lipid Load

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system

Aspergillus niger Secretes Citrate to Increase Iron Bioavailability.

Aspergillus niger citrate exporter revealed by comparison of two alternative citrate producing conditions

Building pathway graphs from BioPAX data in R.

Cas3-Derived Target DNA Degradation Fragments Fuel Primed CRISPR Adaptation

Cofactors revisited - Predicting the impact of flavoprotein-related diseases on a genome scale

Comparative proteomics of Rhizopus delemar ATCC 20344 unravels the role of amino acid catabolism in fumarate accumulation

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data

Comprehensive insights into transcriptional adaptation of intracellular mycobacteria by microbe-enriched dual RNA sequencing

Computational protein design with electrostatic focusing: experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet.

Consistency, Inconsistency and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome Scale Metabolic Modelling

Consistency, Inconsistency, and Ambiguity of Metabolite Names in Biochemical Databases Used for Genome-Scale Metabolic Modelling

Degenerate target sites mediate rapid primed CRISPR adaptation.

Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics.

From the environment to the host: re-wiring of the transcriptome of Pseudomonas aeruginosa from 22°C to 37°C.

Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity

Galactocerebroside biosynthesis pathways of Mycoplasma species: an antigen triggering Guillain-Barré-Stohl syndrome

Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle

Genome-scale metabolic modeling underscores the potential of Cutaneotrichosporon oleaginosus ATCC 20509 as a cell factory for biofuel production

Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

In silico-guided engineering of Pseudomonas putida towards growth under micro-oxic conditions

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis

Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining

Metabolic modeling of energy balances in Mycoplasma hyopneumoniae shows that pyruvate addition increases growth rate

Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage

Model reduction of genome-scale metabolic models as a basis for targeted kinetic models

Model-driven design allows growth of Mycoplasma pneumoniae on serum-free media

Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation

Modeling Host-Pathogen Interaction to Elucidate the Metabolic Drug Response of Intracellular

Modeling the Metabolic State of Upon Infection

Modulating D-amino acid oxidase (DAAO) substrate specificity through facilitated solvent access

Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling

Predicting the murine enterocyte metabolic response to diets that differ in lipid and carbohydrate composition.

Probabilistic Networks of Blood Metabolites in Healthy Subjects As Indicators of Latent Cardiovascular Risk

Programmable bacterial catalysis - designing cells for biosynthesis of value-added compounds.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.

Pushing the limits of automatic computational protein design: design, expression, and characterization of a large synthetic protein based on a fungal laccase scaffold.

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource

Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story

SALARECON connects the Atlantic salmon genome to growth and feed efficiency

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles

Screening and characterization of novel specific peptides targeting MDA-MB-231 claudin-low breast carcinoma by computer-aided phage display methodologies

Simulation and Reconstruction of Metabolite-Metabolite Association Networks Using a Metabolic Dynamic Model and Correlation Based Algorithms

SyNDI: synchronous network data integration framework

Systems Biology in ELIXIR: modelling in the spotlight

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation

The effect of prebiotic fortified infant formulas on microbiota composition and dynamics in early life

Toxicological response of the model fungus Saccharomyces cerevisiae to different concentrations of commercial graphene nanoplatelets

Understanding the antimicrobial mechanism of TiO₂-based nanocomposite films in a pathogenic bacterium

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity