Lista de obras - Takashi Kumasaka - Dominio Público Uruguay

A calcium-dependent xylan-binding domain of alkaline xylanase from alkaliphilic Bacillus sp. strain 41M-1

artículo científico publicado en 2011

A convenient tool for gas derivatization using fine-needle capillary mounting for protein crystals

artículo científico publicado en 2013

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.

artículo científico publicado en 2017

A rapid and robust method for selective isotope labeling of proteins ⬇️

artículo científico publicado el 8 de septiembre de 2011

A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.

artículo científico publicado en 2017

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

scientific article published on 14 June 2019

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice

artículo científico publicado en 2017

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

scientific article published on 17 October 2019

Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals

artículo científico publicado en 2018

Assembly of homogeneous norovirus-like particles accomplished by amino acid substitution.

artículo científico publicado en 2011

Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

artículo científico publicado en 2005

Characterization of Nocardiopsis beta-1,3-glucanase with additional carbohydrate-binding domains

artículo científico publicado en 2007

Cloning and functional characterization of the copper/zinc superoxide dismutase gene from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6

article

Cloning, expression, crystallization, and preliminary X-ray analysis of recombinant mouse lipocalin-type prostaglandin D synthase, a somnogen-producing enzyme

artículo científico publicado en 2003

Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals

scientific article published on 25 November 2020

Contribution of salt bridges to alkaliphily of Bacillus alkaline xylanase

artículo científico publicado en 2007

Critical Roles of Interactions among Switch I-preceding Residues and between Switch II and Its Neighboring α-Helix in Conformational Dynamics of the GTP-bound Ras Family Small GTPases ⬇️

artículo científico publicado el 9 de marzo de 2011

Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus

artículo científico publicado en 2017

Crystal structure of 3-isopropylmalate dehydrogenase in complex with NAD(+) and a designed inhibitor

artículo científico publicado en 2009

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq

artículo científico publicado en 2012

Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.

artículo científico publicado en 2017

Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel

artículo científico publicado en 2012

Crystal structure of rhodopsin: A G protein-coupled receptor

artículo científico publicado en 2000

Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor

artículo científico publicado en 2003

Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis

artículo científico publicado en 2005

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii

artículo científico publicado en 2016

Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants

artículo científico publicado en 2012

Crystallization and X-ray analysis of 2-deoxy-scyllo-inosose synthase, the key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics.

artículo científico publicado en 2005

Crystallization and X-ray analysis of 23 nm virus-like particles from Norovirus Chiba strain

artículo científico publicado en 2017

Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54

Crystallization and preliminary X-ray analyses of quaternary, ternary and binary protein-DNA complexes with involvement of AML1/Runx-1/CBFalpha Runt domain, CBFbeta and the C/EBPbeta bZip region

scientific article published on 25 May 2001

Crystallization and preliminary X-ray analysis of isopentenyl diphosphate isomerase from Methanocaldococcus jannaschii.

artículo científico publicado en 2010

Crystallization and preliminary X-ray analysis of the stress-response PPM phosphatase RsbX from Bacillus subtilis

artículo científico publicado en 2009

Crystallization and preliminary X-ray crystallographic analysis of chitinase F1 (ChiF1) from the alkaliphilic Nocardiopsis sp. strain F96.

artículo científico publicado en 2004

Crystallization and preliminary X-ray diffraction studies of hyperthermophilic archaeal Rieske-type ferredoxin (ARF) from Sulfolobus solfataricus P1

artículo científico publicado en 2010

Crystallization and preliminary X-ray diffraction studies of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004

artículo científico publicado en 2007

Crystallization and preliminary X-ray diffraction studies of the hyperthermophilic archaeal sulredoxin having the unique Rieske [2Fe-2S] cluster environment

scientific article published on 21 July 2004

Crystallization and preliminary X-ray diffraction studies of the prototypal homologue of mitoNEET (Tth-NEET0026) from the extreme thermophile Thermus thermophilus HB8.

artículo científico publicado en 2008

Crystallization and preliminary X-ray studies of xylanase 10B from Thermotoga maritima

artículo científico publicado en 2003

Crystallization and preliminary crystallographic analysis of endo-1,3-beta-glucanase from alkaliphilic Nocardiopsis sp. strain F96.

artículo científico publicado en 2005

Crystallization and preliminary crystallographic analysis of the complex between triiodothyronine and the bb' fragment of rat protein disulfide isomerase

artículo científico publicado en 2012

Crystals of ternary protein-DNA complexes composed of DNA-binding domains of c-Myb or v-Myb, C/EBPalpha or C/EBPbeta and tom-1A promoter fragment

artículo científico publicado en 2001

Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines

artículo científico publicado en 2020

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography

artículo científico publicado en 2017

Development of a shutterless continuous rotation method using an X-ray CMOS detector for protein crystallography ⬇️

artículo científico publicado el 17 de noviembre de 2009

Development of an online UV-visible microspectrophotometer for a macromolecular crystallography beamline

artículo científico publicado en 2013

Dissection of hydrogen bond interaction network around an iron-sulfur cluster by site-specific isotope labeling of hyperthermophilic archaeal Rieske-type ferredoxin

artículo científico publicado en 2012

Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method

artículo científico publicado en 2021

Expression, crystallization and preliminary crystallographic analysis of RNA-binding protein Hfq (YmaH) from Bacillus subtilis in complex with an RNA aptamer.

artículo científico

Expression, crystallization and preliminary crystallographic analysis of the PAS domain of RsbP, a stress-response phosphatase from Bacillus subtilis

artículo científico publicado en 2009

Expression, purification, crystallization and preliminary X-ray analysis of the Met244Ala variant of catalase-peroxidase (KatG) from the haloarchaeon Haloarcula marismortui

artículo científico publicado en 2007

Glutathione ethylester, a novel protein refolding reagent, enhances both the efficiency of refolding and correct disulfide formation

artículo científico publicado en 2012

Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation ⬇️

artículo científico publicado el 14 de enero de 2011

High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine

artículo científico publicado en 2011

Humidity control and hydrophilic glue coating applied to mounted protein crystals improves X-ray diffraction experiments.

artículo científico publicado en 2013

ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization

artículo científico publicado en 2011

Improvement of alkaliphily of Bacillus alkaline xylanase by introducing amino acid substitutions both on catalytic cleft and protein surface

artículo científico publicado en 2009

In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase

artículo científico publicado en 2018

In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction

artículo científico publicado en 2013

In situ crystal data-collection and ligand-screening system at SPring-8

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

artículo científico publicado en 2019

Mail-in data collection at SPring-8 protein crystallography beamlines

artículo científico publicado en 2008

Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter

artículo científico publicado en 2002

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

artículo científico publicado en 2003

Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal

artículo científico publicado en 2016

Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus

artículo científico publicado en 2018

Protein encapsulation within synthetic molecular hosts

artículo científico publicado en 2012

Protein microcrystallography using synchrotron radiation

artículo científico publicado en 2017

RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation

artículo científico publicado en 2006

Remote access and automation of SPring-8 MX beamlines

article

Resonance Raman characterization of archaeal and bacterial Rieske protein variants with modified hydrogen bond network around the [2Fe-2S] center.

artículo científico publicado en 2006

SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

artículo científico publicado en 2013

Self-assembly of tetravalent Goldberg polyhedra from 144 small components

artículo científico publicado en 2016

Short-lived intermediate in NO generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography

Structural Basis for Conformational Dynamics of GTP-bound Ras Protein

artículo científico publicado en 2010

Structural Basis for Polymer Packing and Solvation Properties of the Organogermanium Crystalline Polymer Propagermanium and Its Derivatives

artículo científico publicado en 2015

Structural Features and Functional Dependency on β-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL

artículo científico publicado en 2016

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b

artículo científico publicado en 2016

Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming

artículo científico publicado en 2015

Structural basis for intramolecular interaction of post-translationally modified H-Ras•GTP prepared by protein ligation

artículo científico publicado en 2017

Structural basis of leukotriene B4 12-hydroxydehydrogenase/15-Oxo-prostaglandin 13-reductase catalytic mechanism and a possible Src homology 3 domain binding loop.

artículo científico publicado en 2004

Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8.

artículo científico publicado en 2005

Structural insight into modest binding of a non-PXXP ligand to the signal transducing adaptor molecule-2 Src homology 3 domain

artículo científico publicado en 2003

Structural transition of solvated H-Ras/GTP revealed by molecular dynamics simulation and local network entropy

artículo científico publicado en 2017

Structure of 2-deoxy-scyllo-inosose synthase, a key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics, in complex with a mechanism-based inhibitor and NAD+

artículo científico publicado en 2008

Structure of Thermus thermophilus homoisocitrate dehydrogenase in complex with a designed inhibitor

artículo científico publicado en 2011

Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis

artículo científico publicado en 2015

Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling

artículo científico publicado en 2001

The 1.3 A crystal structure of a novel endo-beta-1,3-glucanase of glycoside hydrolase family 16 from alkaliphilic Nocardiopsis sp. strain F96

artículo científico publicado en 2007

The 1.48 A resolution crystal structure of the homotetrameric cytidine deaminase from mouse.

artículo científico publicado en 2006

The flexible C-terminal region of Aspergillus terreus blasticidin S deaminase: identification of its functional roles with deletion enzymes.

artículo científico publicado en 2002

Trichromatic Concept Optimizes MAD Experiments in Synchrotron X-Ray Crystallography

artículo científico publicado en 2002

Unpaired Electron Spin Density Distribution across Reduced [2Fe-2S] Cluster Ligands by 13Cβ-Cysteine Labeling.

artículo científico publicado en 2017

ZOO: an automatic data-collection system for high-throughput structure analysis in protein microcrystallography

artículo científico publicado en 2019

[Atomic structure of bovine rhodopsin, a seven transmembrane receptor: toward the elucidation of GPCR's molecular mechanism]

scientific article published on 01 May 2001

[SPring-8 structural biology beamline]

artículo científico publicado en 2010

Lista de obras de Takashi Kumasaka

A calcium-dependent xylan-binding domain of alkaline xylanase from alkaliphilic Bacillus sp. strain 41M-1

A convenient tool for gas derivatization using fine-needle capillary mounting for protein crystals

A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase.

A rapid and robust method for selective isotope labeling of proteins ⬇️

A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate.

A temperature-controlled cold-gas humidifier and its application to protein crystals with the humid-air and glue-coating method

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice

An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser

Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals

Assembly of homogeneous norovirus-like particles accomplished by amino acid substitution.

Beamline Scheduling Software: administration software for automatic operation of the RIKEN structural genomics beamlines at SPring-8.

Characterization of Nocardiopsis beta-1,3-glucanase with additional carbohydrate-binding domains

Cloning and functional characterization of the copper/zinc superoxide dismutase gene from the heavy-metal-tolerant yeast Cryptococcus liquefaciens strain N6

Cloning, expression, crystallization, and preliminary X-ray analysis of recombinant mouse lipocalin-type prostaglandin D synthase, a somnogen-producing enzyme

Computer-controlled liquid-nitrogen drizzling device for removing frost from cryopreserved crystals

Contribution of salt bridges to alkaliphily of Bacillus alkaline xylanase

Critical Roles of Interactions among Switch I-preceding Residues and between Switch II and Its Neighboring α-Helix in Conformational Dynamics of the GTP-bound Ras Family Small GTPases ⬇️

Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus

Crystal structure of 3-isopropylmalate dehydrogenase in complex with NAD(+) and a designed inhibitor

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq

Crystal structure of a family 80 chitosanase from Mitsuaria chitosanitabida.

Crystal structure of an orthologue of the NaChBac voltage-gated sodium channel

Crystal structure of rhodopsin: A G protein-coupled receptor

Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor

Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis

Crystal structures of a subunit of the formylglycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii

Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants

Crystallization and X-ray analysis of 2-deoxy-scyllo-inosose synthase, the key enzyme in the biosynthesis of 2-deoxystreptamine-containing aminoglycoside antibiotics.

Crystallization and X-ray analysis of 23 nm virus-like particles from Norovirus Chiba strain

Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54

Crystallization and preliminary X-ray analyses of quaternary, ternary and binary protein-DNA complexes with involvement of AML1/Runx-1/CBFalpha Runt domain, CBFbeta and the C/EBPbeta bZip region

Crystallization and preliminary X-ray analysis of isopentenyl diphosphate isomerase from Methanocaldococcus jannaschii.

Crystallization and preliminary X-ray analysis of the stress-response PPM phosphatase RsbX from Bacillus subtilis

Crystallization and preliminary X-ray crystallographic analysis of chitinase F1 (ChiF1) from the alkaliphilic Nocardiopsis sp. strain F96.

Crystallization and preliminary X-ray diffraction studies of hyperthermophilic archaeal Rieske-type ferredoxin (ARF) from Sulfolobus solfataricus P1

Crystallization and preliminary X-ray diffraction studies of the ISC-like [2Fe-2S] ferredoxin (FdxB) from Pseudomonas putida JCM 20004

Crystallization and preliminary X-ray diffraction studies of the hyperthermophilic archaeal sulredoxin having the unique Rieske [2Fe-2S] cluster environment

Crystallization and preliminary X-ray diffraction studies of the prototypal homologue of mitoNEET (Tth-NEET0026) from the extreme thermophile Thermus thermophilus HB8.

Crystallization and preliminary X-ray studies of xylanase 10B from Thermotoga maritima

Crystallization and preliminary crystallographic analysis of endo-1,3-beta-glucanase from alkaliphilic Nocardiopsis sp. strain F96.

Crystallization and preliminary crystallographic analysis of the complex between triiodothyronine and the bb' fragment of rat protein disulfide isomerase

Crystals of ternary protein-DNA complexes composed of DNA-binding domains of c-Myb or v-Myb, C/EBPalpha or C/EBPbeta and tom-1A promoter fragment

Development of SPACE-II for rapid sample exchange at SPring-8 macromolecular crystallography beamlines

Development of a dose-limiting data collection strategy for serial synchrotron rotation crystallography

Development of a shutterless continuous rotation method using an X-ray CMOS detector for protein crystallography ⬇️

Development of an online UV-visible microspectrophotometer for a macromolecular crystallography beamline

Dissection of hydrogen bond interaction network around an iron-sulfur cluster by site-specific isotope labeling of hyperthermophilic archaeal Rieske-type ferredoxin

Evaluation of the data-collection strategy for room-temperature micro-crystallography studied by serial synchrotron rotation crystallography combined with the humid air and glue-coating method

Expression, crystallization and preliminary crystallographic analysis of RNA-binding protein Hfq (YmaH) from Bacillus subtilis in complex with an RNA aptamer.

Expression, crystallization and preliminary crystallographic analysis of the PAS domain of RsbP, a stress-response phosphatase from Bacillus subtilis

Expression, purification, crystallization and preliminary X-ray analysis of the Met244Ala variant of catalase-peroxidase (KatG) from the haloarchaeon Haloarcula marismortui

Glutathione ethylester, a novel protein refolding reagent, enhances both the efficiency of refolding and correct disulfide formation

Glycine amide shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation ⬇️

High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine

Humidity control and hydrophilic glue coating applied to mounted protein crystals improves X-ray diffraction experiments.

ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from Pseudomonas putida JCM 20004: structural and electron-nuclear double resonance characterization

Improvement of alkaliphily of Bacillus alkaline xylanase by introducing amino acid substitutions both on catalytic cleft and protein surface

In crystallo thermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase

In silico discovery of small-molecule Ras inhibitors that display antitumor activity by blocking the Ras-effector interaction

In situ crystal data-collection and ligand-screening system at SPring-8

Low-dose X-ray structure analysis of cytochrome c oxidase utilizing high-energy X-rays

Mail-in data collection at SPring-8 protein crystallography beamlines

Mechanism of c-Myb-C/EBP beta cooperation from separated sites on a promoter

Mechanism of metal activation of human hematopoietic prostaglandin D synthase

Molecular Mechanism for Conformational Dynamics of Ras·GTP Elucidated from In-Situ Structural Transition in Crystal

Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus

Protein encapsulation within synthetic molecular hosts

Protein microcrystallography using synchrotron radiation

RIKEN structural genomics beamlines at the SPring-8; high throughput protein crystallography with automated beamline operation

Remote access and automation of SPring-8 MX beamlines

Resonance Raman characterization of archaeal and bacterial Rieske protein variants with modified hydrogen bond network around the [2Fe-2S] center.

SPring-8 BL41XU, a high-flux macromolecular crystallography beamline.

Self-assembly of tetravalent Goldberg polyhedra from 144 small components

Short-lived intermediate in NO generation by P450 NO reductase captured by time-resolved IR spectroscopy and XFEL crystallography

Structural Basis for Conformational Dynamics of GTP-bound Ras Protein

Structural Basis for Polymer Packing and Solvation Properties of the Organogermanium Crystalline Polymer Propagermanium and Its Derivatives

Structural Features and Functional Dependency on β-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL

Structural analyses of the nucleosome complexes with human testis-specific histone variants, hTh2a and hTh2b

Structural and functional analyses of nucleosome complexes with mouse histone variants TH2a and TH2b, involved in reprogramming