Lista de obras - Matthias Buck - Dominio Público Uruguay

1H, 15N and 13C Resonance assignments and secondary structure determination reveal that the minimal Rac1 GTPase binding domain of plexin-B1 has a ubiquitin fold

artículo científico publicado en 2005

1H, 15N, 13C assignments for the activated form of the small Rho-GTPase Rac1.

artículo científico publicado en 2006

A direct coupling between global and internal motions in a single domain protein? MD investigation of extreme scenarios

artículo científico publicado en 2011

A partially folded state of hen egg white lysozyme in trifluoroethanol: structural characterization and implications for protein folding

artículo científico publicado en 1993

A refined solution structure of hen lysozyme determined using residual dipolar coupling data

artículo científico publicado en 2001

Acceleration of the folding of hen lysozyme by trifluoroethanol

artículo científico publicado en 1997

Acceptable protein and solvent behavior in primary hydration shell simulations of hen lysozyme

artículo científico publicado en 2007

Analysis of 15N-1H NMR relaxation in proteins by a combined experimental and molecular dynamics simulation approach: picosecond-nanosecond dynamics of the Rho GTPase binding domain of plexin-B1 in the dimeric state indicates allosteric pathways

artículo científico publicado en 2012

Backbone Dynamics of the Ribonuclease Binase Active Site Area Using Multinuclear (15N and13CO) NMR Relaxation and Computational Molecular Dynamics†

article

Backbone assignment and secondary structure of Rnd1, an unusual Rho family small GTPase

artículo científico publicado en 2012

Binding and function of phosphotyrosines of the Ephrin A2 (EphA2) receptor using synthetic sterile α motif (SAM) domains

artículo científico publicado en 2014

Binding of Rac1, Rnd1, and RhoD to a Novel Rho GTPase Interaction Motif Destabilizes Dimerization of the Plexin-B1 Effector Domain

artículo científico publicado en 2007

Combining NMR and molecular dynamics studies for insights into the allostery of small GTPase-protein interactions

artículo científico publicado en 2012

Compensatory and long-range changes in picosecond-nanosecond main-chain dynamics upon complex formation: 15N relaxation analysis of the free and bound states of the ubiquitin-like domain of human plexin-B1 and the small GTPase Rac1.

artículo científico publicado en 2008

Conformational Properties of Four Peptides Spanning the Sequence of Hen Lysozyme

artículo científico publicado en 1995

Crystallography

artículo científico publicado en 2003

Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations

artículo científico publicado en 2016

EPHA2 is associated with age-related cortical cataract in mice and humans

artículo científico publicado en 2009

Equilibrium unfolding studies of horse muscle acylphosphatase.

artículo científico publicado en 1994

G protein beta2 subunit-derived peptides for inhibition and induction of G protein pathways. Examination of voltage-gated Ca2+ and G protein inwardly rectifying K+ channels

artículo científico publicado en 2005

Global disruption of the WASP autoinhibited structure on Cdc42 binding. Ligand displacement as a novel method for monitoring amide hydrogen exchange

artículo científico publicado en 2001

Hydrogen Bond Energetics: A Simulation and Statistical Analysis ofN-Methyl Acetamide (NMA), Water, and Human Lysozyme†

article

Hydrogen exchange in native and denatured states of hen egg-white lysozyme

artículo científico publicado en 1992

Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme

artículo científico publicado en 2005

Insights into Oncogenic Mutations of Plexin-B1 Based on the Solution Structure of the Rho GTPase Binding Domain

artículo científico publicado en 2008

Integrated computational approach to the analysis of NMR relaxation in proteins: application to ps-ns main chain 15N-1H and global dynamics of the Rho GTPase binding domain of plexin-B1.

artículo científico publicado en 2010

Internal and Overall Peptide Group Motion in Proteins: Molecular Dynamics Simulations for Lysozyme Compared with Results from X-ray and NMR Spectroscopy

article

K-Ras at Anionic Membranes: Orientation, Orientation…Orientation. Recent Simulations and Experiments

artículo científico publicado en 2016

Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex

artículo científico publicado en 2009

Local Ordering at the N-H Sites of the Rho GTPase Binding Domain of Plexin-B1: Impact of Dimerization

scientific article published on 16 September 2019

Modeling transmembrane domain dimers/trimers of plexin receptors: implications for mechanisms of signal transmission across the membrane

artículo científico publicado en 2015

Molecular profiling of the "plexinome" in melanoma and pancreatic cancer

artículo científico publicado en 2009

Molecular simulations of a dynamic protein complex: role of salt-bridges and polar interactions in configurational transitions

artículo científico publicado en 2013

NMR structure of a heterodimeric SAM:SAM complex: characterization and manipulation of EphA2 binding reveal new cellular functions of SHIP2.

artículo científico publicado en 2012

Plexin structures are coming: opportunities for multilevel investigations of semaphorin guidance receptors, their cell signaling mechanisms, and functions ⬇️

artículo científico publicado el 29 de junio de 2012

Plexin-Bs enhance their GAP activity with a novel activation switch loop generating a cooperative enzyme

artículo científico publicado en 2020

Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

artículo científico publicado en 2012

Refinement of the primary hydration shell model for molecular dynamics simulations of large proteins

artículo científico publicado en 2009

STRUCTURAL BIOLOGY: Flipping a Switch

artículo científico publicado en 2001

Structural Determinants of Protein Dynamics: Analysis of 15N NMR Relaxation Measurements for Main-Chain and Side-Chain Nuclei of Hen Egg White Lysozyme

article

Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea

artículo científico publicado en 1997

Structural basis of Rnd1 binding to plexin Rho GTPase binding domains (RBDs)

artículo científico publicado en 2011

Structure and dynamics analysis on plexin-B1 Rho GTPase binding domain as a monomer and dimer

artículo científico publicado en 2014

Structure and function of the intracellular region of the plexin-b1 transmembrane receptor

artículo científico publicado en 2009

The RNA-binding site of poliovirus 3C protein doubles as a phosphoinositide-binding domain

artículo científico publicado en 2017

The cytoplasmic domain of neuropilin-1 regulates focal adhesion turnover

artículo científico publicado en 2013

Thermodynamic characterization of two homologous protein complexes: associations of the semaphorin receptor plexin-B1 RhoGTPase binding domain with Rnd1 and active Rac1.

artículo científico publicado en 2009

Time-resolved live-cell spectroscopy reveals EphA2 multimeric assembly

artículo científico publicado en 2023

Toward a Description of the Conformations of Denatured States of Proteins. Comparison of a Random Coil Model with NMR Measurements

article

Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins.

artículo científico publicado en 1998

Tripping a switch: PDZRhoGEF rgRGS-bound Galpha13.

artículo científico publicado en 2008

When monomers are preferred: a strategy for the identification and disruption of weakly oligomerized proteins

artículo científico publicado en 2005

Lista de obras de Matthias Buck

1H, 15N and 13C Resonance assignments and secondary structure determination reveal that the minimal Rac1 GTPase binding domain of plexin-B1 has a ubiquitin fold

1H, 15N, 13C assignments for the activated form of the small Rho-GTPase Rac1.

A direct coupling between global and internal motions in a single domain protein? MD investigation of extreme scenarios

A partially folded state of hen egg white lysozyme in trifluoroethanol: structural characterization and implications for protein folding

A refined solution structure of hen lysozyme determined using residual dipolar coupling data

Acceleration of the folding of hen lysozyme by trifluoroethanol

Acceptable protein and solvent behavior in primary hydration shell simulations of hen lysozyme

Analysis of 15N-1H NMR relaxation in proteins by a combined experimental and molecular dynamics simulation approach: picosecond-nanosecond dynamics of the Rho GTPase binding domain of plexin-B1 in the dimeric state indicates allosteric pathways

Backbone Dynamics of the Ribonuclease Binase Active Site Area Using Multinuclear (15N and13CO) NMR Relaxation and Computational Molecular Dynamics†

Backbone assignment and secondary structure of Rnd1, an unusual Rho family small GTPase

Binding and function of phosphotyrosines of the Ephrin A2 (EphA2) receptor using synthetic sterile α motif (SAM) domains

Binding of Rac1, Rnd1, and RhoD to a Novel Rho GTPase Interaction Motif Destabilizes Dimerization of the Plexin-B1 Effector Domain

Combining NMR and molecular dynamics studies for insights into the allostery of small GTPase-protein interactions

Compensatory and long-range changes in picosecond-nanosecond main-chain dynamics upon complex formation: 15N relaxation analysis of the free and bound states of the ubiquitin-like domain of human plexin-B1 and the small GTPase Rac1.

Conformational Properties of Four Peptides Spanning the Sequence of Hen Lysozyme

Crystallography

Dissociation of a Dynamic Protein Complex Studied by All-Atom Molecular Simulations

EPHA2 is associated with age-related cortical cataract in mice and humans

Equilibrium unfolding studies of horse muscle acylphosphatase.

G protein beta2 subunit-derived peptides for inhibition and induction of G protein pathways. Examination of voltage-gated Ca2+ and G protein inwardly rectifying K+ channels

Global disruption of the WASP autoinhibited structure on Cdc42 binding. Ligand displacement as a novel method for monitoring amide hydrogen exchange

Hydrogen Bond Energetics: A Simulation and Statistical Analysis ofN-Methyl Acetamide (NMA), Water, and Human Lysozyme†

Hydrogen exchange in native and denatured states of hen egg-white lysozyme

Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme

Insights into Oncogenic Mutations of Plexin-B1 Based on the Solution Structure of the Rho GTPase Binding Domain

Integrated computational approach to the analysis of NMR relaxation in proteins: application to ps-ns main chain 15N-1H and global dynamics of the Rho GTPase binding domain of plexin-B1.

Internal and Overall Peptide Group Motion in Proteins: Molecular Dynamics Simulations for Lysozyme Compared with Results from X-ray and NMR Spectroscopy

K-Ras at Anionic Membranes: Orientation, Orientation…Orientation. Recent Simulations and Experiments

Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex

Local Ordering at the N-H Sites of the Rho GTPase Binding Domain of Plexin-B1: Impact of Dimerization

Modeling transmembrane domain dimers/trimers of plexin receptors: implications for mechanisms of signal transmission across the membrane

Molecular profiling of the "plexinome" in melanoma and pancreatic cancer

Molecular simulations of a dynamic protein complex: role of salt-bridges and polar interactions in configurational transitions

NMR structure of a heterodimeric SAM:SAM complex: characterization and manipulation of EphA2 binding reveal new cellular functions of SHIP2.

Plexin structures are coming: opportunities for multilevel investigations of semaphorin guidance receptors, their cell signaling mechanisms, and functions ⬇️

Plexin-Bs enhance their GAP activity with a novel activation switch loop generating a cooperative enzyme

Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

Refinement of the primary hydration shell model for molecular dynamics simulations of large proteins

STRUCTURAL BIOLOGY: Flipping a Switch

Structural Determinants of Protein Dynamics: Analysis of 15N NMR Relaxation Measurements for Main-Chain and Side-Chain Nuclei of Hen Egg White Lysozyme

Structural and dynamical properties of a denatured protein. Heteronuclear 3D NMR experiments and theoretical simulations of lysozyme in 8 M urea

Structural basis of Rnd1 binding to plexin Rho GTPase binding domains (RBDs)

Structure and dynamics analysis on plexin-B1 Rho GTPase binding domain as a monomer and dimer

Structure and function of the intracellular region of the plexin-b1 transmembrane receptor

The RNA-binding site of poliovirus 3C protein doubles as a phosphoinositide-binding domain

The cytoplasmic domain of neuropilin-1 regulates focal adhesion turnover

Thermodynamic characterization of two homologous protein complexes: associations of the semaphorin receptor plexin-B1 RhoGTPase binding domain with Rnd1 and active Rac1.

Time-resolved live-cell spectroscopy reveals EphA2 multimeric assembly

Toward a Description of the Conformations of Denatured States of Proteins. Comparison of a Random Coil Model with NMR Measurements

Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins.

Tripping a switch: PDZRhoGEF rgRGS-bound Galpha13.

When monomers are preferred: a strategy for the identification and disruption of weakly oligomerized proteins