Lista de obras - Panagiotis L. Kastritis - Dominio Público Uruguay

2.7 Å cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope

scientific article published on 06 May 2020

A structure-based benchmark for protein-protein binding affinity

artículo científico publicado en 2011

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

artículo científico publicado en 2014

Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteria

artículo científico publicado en 2011

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

artículo científico publicado en 2010

Blind prediction of interfacial water positions in CAPRI

artículo científico publicado en 2013

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server

artículo científico publicado en 2010

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

artículo científico publicado en 2017

Clustering biomolecular complexes by residue contacts similarity

artículo científico publicado en 2012

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

artículo científico publicado en 2011

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

artículo científico publicado en 2013

Constructing artificial respiratory chain in polymer compartments: Insights into the interplay between bo 3 oxidase and the membrane

scientific article published on 17 June 2020

Cryo-EM snapshots of a native lysate provide structural insights into a metabolon-embedded transacetylase reaction

artículo científico publicado en 2021

Defining distance restraints in HADDOCK

scientific article published on 25 June 2018

Defining the limits of homology modeling in information-driven protein docking

artículo científico publicado en 2013

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

artículo científico publicado en 2012

HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.

artículo científico publicado en 2014

Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs.

artículo científico publicado en 2007

In situ structural analysis of the human nuclear pore complex

artículo científico publicado en 2015

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

artículo científico publicado en 2020

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

scientific article published on 03 December 2020

Integrative biology of native cell extracts: a new era for structural characterization of life processes

scientific article published on 01 June 2019

Molecular origins of binding affinity: seeking the Archimedean point ⬇️

artículo científico publicado el 19 de julio de 2013

New potential peptide therapeutics perturbing CK1δ/α-tubulin interaction

artículo científico publicado en 2016

Next challenges in protein-protein docking: from proteome to interactome and beyond

artículo científico publicado en 2011

Non-interacting surface solvation and dynamics in protein-protein interactions

artículo científico publicado en 2015

Novel exotic alleles of <i>EARLY FLOWERING 3</i> determine plant development in barley

artículo científico publicado en 2023

On the binding affinity of macromolecular interactions: daring to ask why proteins interact ⬇️

artículo científico publicado el 12 de diciembre de 2012

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

artículo científico publicado en 2016

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

artículo científico publicado en 2016

Protein-Protein Docking with HADDOCK

artículo científico publicado en 2012

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

artículo científico publicado en 2014

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

artículo científico publicado en 2016

Solvated protein-DNA docking using HADDOCK.

artículo científico publicado en 2013

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

artículo científico publicado en 2012

Spatiotemporal variation of mammalian protein complex stoichiometries.

artículo científico publicado en 2016

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

artículo científico publicado en 2010

Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold

artículo científico publicado en 2015

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

artículo científico publicado en 2020

Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design

scientific article published on 16 September 2020

Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins

artículo científico publicado en 2017

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex

artículo científico publicado en 2016

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

artículo científico publicado en 2015

Unstructured regions of large enzymatic complexes control the availability of metabolites with signaling functions

artículo científico publicado en 2020

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

artículo científico publicado en 2015

dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking

artículo científico publicado en 2016

Lista de obras de Panagiotis L. Kastritis

2.7 Å cryo-EM structure of vitrified M. musculus H-chain apoferritin from a compact 200 keV cryo-microscope

A structure-based benchmark for protein-protein binding affinity

An integrated approach for genome annotation of the eukaryotic thermophile Chaetomium thermophilum

Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteria

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

Blind prediction of interfacial water positions in CAPRI

Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

Clustering biomolecular complexes by residue contacts similarity

Community-wide assessment of protein-interface modeling suggests improvements to design methodology

Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions

Constructing artificial respiratory chain in polymer compartments: Insights into the interplay between bo 3 oxidase and the membrane

Cryo-EM snapshots of a native lysate provide structural insights into a metabolon-embedded transacetylase reaction

Defining distance restraints in HADDOCK

Defining the limits of homology modeling in information-driven protein docking

Explicit treatment of water molecules in data-driven protein-protein docking: the solvated HADDOCKing approach.

HADDOCK(2P2I): a biophysical model for predicting the binding affinity of protein-protein interaction inhibitors.

Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs.

In situ structural analysis of the human nuclear pore complex

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

Insights on cross-species transmission of SARS-CoV-2 from structural modeling

Integrative biology of native cell extracts: a new era for structural characterization of life processes

Molecular origins of binding affinity: seeking the Archimedean point ⬇️

New potential peptide therapeutics perturbing CK1δ/α-tubulin interaction

Next challenges in protein-protein docking: from proteome to interactome and beyond

Non-interacting surface solvation and dynamics in protein-protein interactions

Novel exotic alleles of <i>EARLY FLOWERING 3</i> determine plant development in barley

On the binding affinity of macromolecular interactions: daring to ask why proteins interact ⬇️

PRODIGY: a web server for predicting the binding affinity of protein-protein complexes

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment

Protein-Protein Docking with HADDOCK

Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface.

Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.

Solvated protein-DNA docking using HADDOCK.

Solvated protein-protein docking using Kyte-Doolittle-based water preferences

Spatiotemporal variation of mammalian protein complex stoichiometries.

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.

Structural basis for assembly and function of the Nup82 complex in the nuclear pore scaffold

Structural impact of K63 ubiquitin on yeast translocating ribosomes under oxidative stress

Structural models of human ACE2 variants with SARS-CoV-2 Spike protein for structure-based drug design

Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins

The Combination of X-Ray Crystallography and Cryo-Electron Microscopy Provides Insight into the Overall Architecture of the Dodecameric Rvb1/Rvb2 Complex

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

Unstructured regions of large enzymatic complexes control the availability of metabolites with signaling functions

Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.

dMM-PBSA: A New HADDOCK Scoring Function for Protein-Peptide Docking