Lista de obras - Bas E. Dutilh - Dominio Público Uruguay

A Prioritized and Validated Resource of Mitochondrial Proteins in <i>Plasmodium</i> Identifies Unique Biology

artículo científico publicado en 2021

A bacterial driver–passenger model for colorectal cancer: beyond the usual suspects

article

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

artículo científico publicado en 2006

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

artículo científico publicado en 2014

A social niche breadth score reveals niche range strategies of generalists and specialists

artículo científico publicado en 2023

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

artículo científico publicado en 2019

Assessment of phylogenomic and orthology approaches for phylogenetic inference

artículo científico publicado en 2007

Asymmetric relationships between proteins shape genome evolution.

artículo científico publicado en 2009

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Bacterial responses to a simulated colon tumor microenvironment

artículo científico publicado en 2012

Beyond research: a primer for considerations on using viral metagenomics in the field and clinic

artículo científico publicado en 2015

Binomial nomenclature for virus species: a consultation

scientific article published on 01 February 2020

Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids

artículo científico publicado en 2020

Cell wall modifications during conidial maturation of the human pathogenic fungus Pseudallescheria boydii

artículo científico publicado en 2014

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

artículo científico publicado en 2018

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

scientific article published on 01 September 2019

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

artículo científico publicado en 2020

Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses

artículo científico publicado en 2017

Combining de novo and reference-guided assembly with scaffold_builder

artículo científico publicado en 2013

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions

artículo científico publicado en 2014

Computational approaches to predict bacteriophage-host relationships.

artículo científico publicado en 2015

Conservation of divergent transcription in fungi.

scientific article published on 28 March 2008

Copper tolerance and distribution of epibiotic bacteria associated with giant kelp Macrocystis pyrifera in southern California.

artículo científico publicado en 2015

Correction to: Binomial nomenclature for virus species: a consultation

artículo científico publicado en 2020

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

artículo científico publicado en 2006

Decline in excision circles requires homeostatic renewal or homeostatic death of naive T cells

artículo científico publicado en 2003

Development of styrene maleic acid lipid particles (SMALPs) as a tool for studies of phage-host interactions

scientific article published on 16 September 2020

Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate

artículo científico publicado en 2007

Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing

artículo científico publicado en 2012

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis

artículo científico publicado en 2015

Draft Genome Sequence of Anammox Bacterium "Candidatus Scalindua brodae," Obtained Using Differential Coverage Binning of Sequencing Data from Two Reactor Enrichments

artículo científico publicado en 2015

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria

artículo científico publicado en 2017

Ecogenomics and Taxonomy of Cyanobacteria Phylum

artículo científico publicado en 2017

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

artículo científico publicado en 2016

Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia

artículo científico publicado en 2020

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities.

artículo científico publicado en 2017

Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum

artículo científico publicado en 2018

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

scientific article published on 21 November 2019

Evolutionary Study of the Crassphage Virus at Gene Level

scientific article published on 17 September 2020

Explaining microbial phenotypes on a genomic scale: GWAS for microbes

artículo científico

FACIL: Fast and Accurate Genetic Code Inference and Logo

artículo científico publicado en 2011

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

artículo científico publicado en 2014

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems

artículo científico publicado en 2015

Genome sequence of the human pathogen Vibrio cholerae Amazonia

artículo científico

Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9.

artículo científico publicado en 2012

Genome trees and the nature of genome evolution

artículo científico publicado en 2005

Genome-Wide Study of the Defective Sucrose Fermenter Strain of Vibrio cholerae from the Latin American Cholera Epidemic ⬇️

artículo científico publicado el 25 de mayo de 2012

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system

artículo científico publicado en 2016

Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus.

artículo científico publicado en 2010

Genome-wide screening in human growth plates during puberty in one patient suggests a role for RUNX2 in epiphyseal maturation.

artículo científico publicado en 2011

Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum

artículo científico publicado en 2015

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

artículo científico publicado en 2019

Guidance for creating individual and batch latinized binomial virus species names

artículo científico publicado en 2022

High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems

publication published on 09 November 2021

Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment

artículo científico publicado en 2006

Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain

artículo científico publicado en 2021

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness

artículo científico publicado en 2013

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome

artículo científico publicado en 2023

Immunoglobulin rearrangement analysis from multiple lesions in the same patient using next-generation sequencing.

artículo científico publicado en 2015

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly

artículo científico publicado en 2009

Induction of differentiation and metabolic reprogramming in human hepatoma cells by adult human serum

Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses

artículo científico publicado en 2017

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

artículo científico publicado en 2018

Lifestyle of sponge symbiont phages by host prediction and correlative microscopy

artículo científico publicado en 2021

Macronuclear genome structure of the ciliate Nyctotherus ovalis: single-gene chromosomes and tiny introns

artículo científico publicado en 2008

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

artículo científico publicado en 2017

Mass spectrometry analysis of hepcidin peptides in experimental mouse models

artículo científico publicado en 2011

Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients

artículo científico publicado en 2018

Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm

artículo científico publicado en 2015

Metagenomic ventures into outer sequence space

artículo científico publicado en 2014

Metagenomics and future perspectives in virus discovery.

artículo científico publicado en 2012

Microbial Metabolism Shifts Towards an Adverse Profile with Supplementary Iron in the TIM-2 In vitro Model of the Human Colon.

artículo científico publicado en 2015

Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean

artículo científico publicado en 2014

Microbial taxonomy in the post-genomic era: rebuilding from scratch?

artículo científico publicado en 2014

Minimum Information about an Uncultivated Virus Genome (MIUViG)

artículo científico publicado en 2018

Molecular and Evolutionary Determinants of Bacteriophage Host Range

scientific article published on 01 September 2018

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

artículo científico publicado en 2015

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

artículo científico publicado en 2010

Optimized bacterial DNA isolation method for microbiome analysis of human tissues

artículo científico publicado en 2021

Oxygen minimum zones harbour novel viral communities with low diversity

artículo científico publicado en 2012

Perspective on taxonomic classification of uncultivated viruses

Phage Genome Annotation Using the RAST Pipeline.

artículo científico publicado en 2018

Pharmacomicrobiomics: the impact of human microbiome variations on systems pharmacology and personalized therapeutics

artículo científico publicado en 2014

Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution ⬇️

artículo científico publicado en 2008

Preservation of bacterial DNA in 10-year-old guaiac FOBT cards and FIT tubes

artículo científico publicado en 2017

Proposal of fifteen new species of Parasynechococcus based on genomic, physiological and ecological features

artículo científico publicado en 2016

Pyrosequencing of 16S rRNA gene amplicons to study the microbiota in the gastrointestinal tract of carp (Cyprinus carpio L.).

artículo científico publicado en 2011

Quantifying the Impact of Human Leukocyte Antigen on the Human Gut Microbiota

artículo científico publicado en 2021

Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)

artículo científico publicado en 2022

Reference-independent comparative metagenomics using cross-assembly: crAss.

artículo científico publicado en 2012

Reply to: Caution in inferring viral strategies from abundance correlations in marine metagenomes

scientific article published in Nature Communications

SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data

artículo científico publicado en 2015

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer.

artículo científico

Sequence specificity between interacting and non-interacting homologs identifies interface residues--a homodimer and monomer use case

artículo científico publicado en 2015

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition

artículo científico publicado en 2014

Signature genes as a phylogenomic tool

artículo científico publicado en 2008

Signature, a web server for taxonomic characterization of sequence samples using signature genes.

artículo científico publicado en 2008

Targeting mechanisms of tailed bacteriophages

artículo científico publicado en 2018

Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis

artículo científico publicado en 2012

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee

artículo científico publicado en 2016

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

artículo científico publicado en 2018

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

scientific article published on 11 March 2020

Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee

artículo científico publicado en 2016

Temporal dynamics of uncultured viruses: a new dimension in viral diversity

artículo científico publicado en 2017

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise

artículo científico publicado en 2004

The metagenome of the marine anammox bacterium 'Candidatus Scalindua profunda' illustrates the versatility of this globally important nitrogen cycle bacterium

artículo científico publicado en 2012

The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus

artículo científico publicado en 2009

The organellar genome and metabolic potential of the hydrogen-producing mitochondrion of Nyctotherus ovalis.

artículo científico publicado en 2011

Towards predicting the environmental metabolome from metagenomics with a mechanistic model

article

Towards the human colorectal cancer microbiome

artículo científico publicado en 2011

Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog

artículo científico publicado en 2011

Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture.

artículo científico publicado en 2016

Use of whole genome sequencing to predict Mycobacterium tuberculosis drug resistance in Indonesia

scholarly article by Lidya Chaidir et al published 29 August 2018 in Journal of global antimicrobial resistance

Lista de obras de Bas E. Dutilh

A Prioritized and Validated Resource of Mitochondrial Proteins in <i>Plasmodium</i> Identifies Unique Biology

A bacterial driver–passenger model for colorectal cancer: beyond the usual suspects

A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation

A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

A social niche breadth score reveals niche range strategies of generalists and specialists

Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018)

Assessment of phylogenomic and orthology approaches for phylogenetic inference

Asymmetric relationships between proteins shape genome evolution.

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021

Bacterial responses to a simulated colon tumor microenvironment

Beyond research: a primer for considerations on using viral metagenomics in the field and clinic

Binomial nomenclature for virus species: a consultation

Bridging the membrane lipid divide: bacteria of the FCB group superphylum have the potential to synthesize archaeal ether lipids

Cell wall modifications during conidial maturation of the human pathogenic fungus Pseudallescheria boydii

Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020)

Characterization and Temperature Dependence of Arctic Micromonas polaris Viruses

Combining de novo and reference-guided assembly with scaffold_builder

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions

Computational approaches to predict bacteriophage-host relationships.

Conservation of divergent transcription in fungi.

Copper tolerance and distribution of epibiotic bacteria associated with giant kelp Macrocystis pyrifera in southern California.

Correction to: Binomial nomenclature for virus species: a consultation

Deciphering the evolution and metabolism of an anammox bacterium from a community genome

Decline in excision circles requires homeostatic renewal or homeostatic death of naive T cells

Development of styrene maleic acid lipid particles (SMALPs) as a tool for studies of phage-host interactions

Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate

Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing

Dispersion of the HIV-1 Epidemic in Men Who Have Sex with Men in the Netherlands: A Combined Mathematical Model and Phylogenetic Analysis

Draft Genome Sequence of Anammox Bacterium "Candidatus Scalindua brodae," Obtained Using Differential Coverage Binning of Sequencing Data from Two Reactor Enrichments

Draft Genome of Scalindua rubra, Obtained from the Interface Above the Discovery Deep Brine in the Red Sea, Sheds Light on Potential Salt Adaptation Strategies in Anammox Bacteria

Ecogenomics and Taxonomy of Cyanobacteria Phylum

Ecogenomics and biogeochemical impacts of uncultivated globally abundant ocean viruses

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses

Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities.

Establishing normal metabolism and differentiation in hepatocellular carcinoma cells by culturing in adult human serum

Evolution of BACON Domain Tandem Repeats in crAssphage and Novel Gut Bacteriophage Lineages

Evolutionary Study of the Crassphage Virus at Gene Level

Explaining microbial phenotypes on a genomic scale: GWAS for microbes

FACIL: Fast and Accurate Genetic Code Inference and Logo

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems

Genome sequence of the human pathogen Vibrio cholerae Amazonia

Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9.

Genome trees and the nature of genome evolution

Genome-Wide Study of the Defective Sucrose Fermenter Strain of Vibrio cholerae from the Latin American Cholera Epidemic ⬇️

Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system

Genome-wide profiling of p63 DNA-binding sites identifies an element that regulates gene expression during limb development in the 7q21 SHFM1 locus.

Genome-wide screening in human growth plates during puberty in one patient suggests a role for RUNX2 in epiphyseal maturation.

Genomic Comparison of the Closely-Related Salmonella enterica Serovars Enteritidis, Dublin and Gallinarum

Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

Guidance for creating individual and batch latinized binomial virus species names

High viral abundance and low diversity are associated with increased CRISPR-Cas prevalence across microbial ecosystems

Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment

Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome

Immunoglobulin rearrangement analysis from multiple lesions in the same patient using next-generation sequencing.

Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly

Induction of differentiation and metabolic reprogramming in human hepatoma cells by adult human serum

Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses

Large-scale genomic analysis shows association between homoplastic genetic variation in Mycobacterium tuberculosis genes and meningeal or pulmonary tuberculosis.

Lifestyle of sponge symbiont phages by host prediction and correlative microscopy

Macronuclear genome structure of the ciliate Nyctotherus ovalis: single-gene chromosomes and tiny introns

Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans

Mass spectrometry analysis of hepcidin peptides in experimental mouse models

Metagenomic Characterization of the Human Intestinal Microbiota in Fecal Samples from STEC-Infected Patients

Metagenomic and metaproteomic analyses of Accumulibacter phosphatis-enriched floccular and granular biofilm

Metagenomic ventures into outer sequence space

Metagenomics and future perspectives in virus discovery.

Microbial Metabolism Shifts Towards an Adverse Profile with Supplementary Iron in the TIM-2 In vitro Model of the Human Colon.

Microbial community diversity and physical-chemical features of the Southwestern Atlantic Ocean

Microbial taxonomy in the post-genomic era: rebuilding from scratch?

Minimum Information about an Uncultivated Virus Genome (MIUViG)

Molecular and Evolutionary Determinants of Bacteriophage Host Range

Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria