Lista de obras - Morgane Thomas-Chollier - Dominio Público Uruguay

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

artículo científico publicado en 2012

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

artículo científico publicado en 2013

A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution

artículo científico publicado en 2010

Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data

artículo científico publicado en 2008

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

artículo científico publicado en 2015

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni: comment ⬇️

artículo científico publicado en 2008

Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation

scientific article published on 16 April 2019

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

artículo científico publicado en 2016

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo

artículo científico publicado en 2020

Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation

artículo científico publicado en 2016

HoxPred: automated classification of Hox proteins using combinations of generalised profiles

artículo científico publicado en 2007

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements

artículo científico publicado en 2016

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

artículo científico publicado en 2017

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.

artículo científico publicado en 2017

Logical modelling of <i>in vitro</i> differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions

artículo científico publicado en 2021

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria

artículo científico publicado en 2019

Molecular insights into the origin of the Hox-TALE patterning system

artículo científico publicado en 2014

Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

artículo científico publicado en 2007

Origin of Metazoan Patterning Systems and the Role of ANTP-Class Homeobox Genes

article

RSAT 2011: regulatory sequence analysis tools.

artículo científico publicado en 2011

RSAT 2015: Regulatory Sequence Analysis Tools.

artículo científico publicado en 2015

RSAT 2018: regulatory sequence analysis tools 20th anniversary.

artículo científico publicado en 2018

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.

artículo científico publicado en 2017

RSAT peak-motifs: fast extraction of transcription factor binding motifs from full-size ChIP-seq datasets

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

artículo científico publicado en 2011

RSAT: regulatory sequence analysis tools

artículo científico publicado en 2008

Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl

artículo científico

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

artículo científico publicado en 2016

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

artículo científico publicado en 2016

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise

scientific article published on 14 November 2018

Theoretical and empirical quality assessment of transcription factor-binding motifs

artículo científico publicado en 2010

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

artículo científico publicado en 2011

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules

artículo científico publicado en 2008

Lista de obras de Morgane Thomas-Chollier

A complete workflow for the analysis of full-size ChIP-seq (and similar) data sets using peak-motifs.

A naturally occurring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms.

A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution

Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data

ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni: comment ⬇️

Cooperation between T cell receptor and Toll-like receptor 5 signaling for CD4+ T cell activation

Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Deciphering and modelling the TGF-β signalling interplays specifying the dorsal-ventral axis of the sea urchin embryo

Histone Chaperone SSRP1 is Essential for Wnt Signaling Pathway Activity During Osteoblast Differentiation

HoxPred: automated classification of Hox proteins using combinations of generalised profiles

Identification and characterization of DNA sequences that prevent glucocorticoid receptor binding to nearby response elements

Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements

Logical modeling of lymphoid and myeloid cell specification and transdifferentiation.

Logical modelling of <i>in vitro</i> differentiation of human monocytes into dendritic cells unravels novel transcriptional regulatory interactions

Mitigating Anticipated Effects of Systematic Errors Supports Sister-Group Relationship between Xenacoelomorpha and Ambulacraria

Molecular insights into the origin of the Hox-TALE patterning system

Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics

Origin of Metazoan Patterning Systems and the Role of ANTP-Class Homeobox Genes

RSAT 2011: regulatory sequence analysis tools.

RSAT 2015: Regulatory Sequence Analysis Tools.

RSAT 2018: regulatory sequence analysis tools 20th anniversary.

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.

RSAT peak-motifs: fast extraction of transcription factor binding motifs from full-size ChIP-seq datasets

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

RSAT: regulatory sequence analysis tools

Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl

Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation

Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity

Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise

Theoretical and empirical quality assessment of transcription factor-binding motifs

Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules