A comparison of short-read, HiFi long-read, and hybrid strategies for genome-resolved metagenomics

Accurate plasmid reconstruction from metagenomics data using assembly-alignment graphs and contrastive learning

Adaptive evolution of phenotypic switching during environmental change

An easily modifiable conjugative plasmid for studying horizontal gene transfer

Author response: Modeling transfer of vaginal microbiota from mother to infant in early life

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids

CRISPRCasTyper: An automated tool for the identification, annotation and classification of CRISPR-Cas loci

Comparative genomics analysis of Chryseobacterium sp. KMC2 reveals metabolic pathways involved in keratinous utilization and natural product biosynthesis

Construction of simplified microbial consortia to degrade recalcitrant materials based on enrichment and dilution-to-extinction cultures

Discovery of multiple anti-CRISPRs uncovers anti-defense gene clustering in mobile genetic elements

Droplet size and surface hydrophobicity enhance bacterial plasmid transfer rates in microscopic surface wetness

Effects of long-term warming and enhanced nitrogen and sulfur deposition on microbial communities in a boreal peatland

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota

Faculty Opinions recommendation of Emergent simplicity in microbial community assembly.

Hundreds of viral families in the healthy infant gut

Hundreds of viral families in the healthy infant gut

MAGinator enables strain-level quantification ofde novoMAGs

Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

Plasmid Permissiveness of Wastewater Microbiomes can be Predicted from 16S rDNA sequences by Machine Learning

Prophages in the infant gut are induced and modulate the functionality of their hosts

Stability of the vaginal microbiota during pregnancy and its importance for early infant colonization

Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids