Lista de obras - Andrey Rzhetsky - Dominio Público Uruguay

A Distributed Look-up Architecture for Text Mining Applications using MapReduce

scholarly article published November 2011

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

artículo científico publicado en 2013

A Novel Hypothesis Regarding the Evolutionary Origins of the Immunoglobulin Fold

artículo científico publicado en 2000

A distributed look-up architecture for text mining applications using MapReduce

article published in 2011

A graphic editor for analyzing signal-transduction pathways

artículo científico publicado en 2000

A knowledge model for analysis and simulation of regulatory networks.

artículo científico

A recipe for high impact

artículo científico publicado en 2007

A spatial map of olfactory receptor expression in the Drosophila antenna.

artículo científico publicado en 1999

Advancing science through mining libraries, ontologies, and communities

artículo científico publicado en 2011

Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer.

artículo científico publicado en 2009

Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27.

artículo científico publicado en 1998

Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids

artículo científico publicado en 2020

Automatically identifying gene/protein terms in MEDLINE abstracts.

artículo científico publicado en 2002

Benchmarking ontologies: bigger or better?

artículo científico publicado en 2011

Birth and death of protein domains: a simple model of evolution explains power law behavior

artículo científico publicado en 2002

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

artículo científico publicado en 2001

Centralized scientific communities are less likely to generate replicable results

artículo científico publicado en 2019

Choosing experiments to accelerate collective discovery

artículo científico publicado en 2015

Classification of common human diseases derived from shared genetic and environmental determinants

artículo científico

Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis

artículo científico publicado en 2011

Conjunction of factors triggering waves of seasonal influenza

artículo científico publicado en 2018

Corrigendum: The BioPAX community standard for pathway data sharing

correction; published 7 December 2010

Dissecting schizophrenia phenotypic variation: the contribution of genetic variation, environmental exposures, and gene–environment interactions

artículo científico publicado en 2022

Emergent behavior of growing knowledge about molecular interactions.

artículo científico publicado en 2005

Environmental and state-level regulatory factors affect the incidence of autism and intellectual disability

artículo científico publicado en 2014

Environmental pollution is associated with increased risk of psychiatric disorders in the US and Denmark

scientific article published on 20 August 2019

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

scholarly article published in Nature Biotechnology

Estimating heritability and genetic correlations from large health datasets in the absence of genetic data

scientific article published on 03 December 2019

Evolutionary relationships of eukaryotic kingdoms

artículo científico

Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.

artículo científico publicado en 1997

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

artículo científico publicado en 2001

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

artículo científico publicado en 2004

Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes

artículo científico publicado en 2015

Getting started in text mining: part two.

artículo científico publicado en 2009

Health ROI as a measure of misalignment of biomedical needs and resources

artículo científico publicado en 2015

How many scientific papers should be retracted?

artículo científico publicado en 2007

How to get the most out of your curation effort

artículo científico publicado en 2009

Human aldehyde dehydrogenase gene family.

artículo científico publicado en 1998

Human and mouse orthologs of a new ATP-binding cassette gene, ABCG4.

artículo científico publicado en 2001

Imitating manual curation of text-mined facts in biomedicine

artículo científico publicado en 2006

Imitating manual curation of text-mined facts in biomedicine

article published in 2005

Immunity-related genes and gene families in Anopheles gambiae

artículo científico publicado en 2002

Listening to viral tongues: comparing viral trees using a stochastic context-free grammar.

artículo científico publicado en 2004

Looking at cerebellar malformations through text-mined interactomes of mice and humans

artículo científico publicado en 2009

Measurable health effects associated with the daylight saving time shift

artículo científico publicado en 2020

Mining biomedical texts for disease-related pathways

Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

scholarly article

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

artículo científico publicado en 2021

Network properties of genes harboring inherited disease mutations

artículo científico publicado en 2008

New directions in biomedical text annotation: definitions, guidelines and corpus construction

artículo científico publicado en 2006

Novel opportunities for computational biology and sociology in drug discovery.

artículo científico publicado en 2009

Observable variations in human sex ratio at birth

artículo científico publicado en 2021

Of truth and pathways: chasing bits of information through myriads of articles.

artículo científico publicado en 2002

Origin of the metazoan phyla: Molecular clocks confirm paleontological estimates ⬇️

artículo científico publicado el 20 de enero de 1998

Patchwork of contrasting medication cultures across the USA

artículo científico publicado en 2018

Philosophy of science. Machine science

artículo científico publicado en 2010

Postnatal immune activation causes social deficits in a mouse model of tuberous sclerosis: Role of microglia and clinical implications

artículo científico publicado en 2021

Probabilistic inference of molecular networks from noisy data sources

artículo científico publicado en 2004

Probing genetic overlap among complex human phenotypes.

artículo científico publicado en 2007

Quantifying the impact and extent of undocumented biomedical synonymy

artículo científico publicado en 2014

Quantitative systems-level determinants of human genes targeted by successful drugs.

artículo científico publicado en 2007

Quick assessment of similarity of two sequences by comparison of their L-tuple frequencies

artículo científico publicado en 1993

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

artículo científico publicado en 2018

Representation of probabilistic scientific knowledge

artículo científico publicado en 2013

Representation of research hypotheses ⬇️

artículo científico publicado en 2011

Response by Cokol et al.

artículo científico publicado en 2007

Seeking a new biology through text mining

artículo científico publicado en 2008

Self-correcting maps of molecular pathways

artículo científico publicado en 2006

Six senses in the literature. The bleak sensory landscape of biomedical texts

artículo científico publicado en 2008

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

artículo científico publicado en 1992

The BioPAX community standard for pathway data sharing

artículo científico publicado en 2010

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

artículo científico publicado en 2004

The human ATP-binding cassette (ABC) transporter superfamily

artículo científico publicado en 2001

Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.

artículo científico publicado en 1998

Tradition and Innovation in Scientists’ Research Strategies

article

Ultra-multiplexed analysis of single-cell dynamics reveals logic rules in differentiation

artículo científico publicado en 2019

Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites

artículo científico publicado en 1994

Understanding Toxoplasmosis in the United States Through "Large Data" Analyses

artículo científico publicado en 2016

Using BLAST for identifying gene and protein names in journal articles.

artículo científico publicado en 2000

VOSTORG: a package of microcomputer programs for sequence analysis and construction of phylogenetic trees

artículo científico publicado en 1991

War of ontology worlds: mathematics, computer code, or Esperanto?

artículo científico publicado en 2011

When is it safe to use an oversimplified substitution model in tree-making?

artículo científico publicado en 1996

Lista de obras de Andrey Rzhetsky

A Distributed Look-up Architecture for Text Mining Applications using MapReduce

A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk

A Novel Hypothesis Regarding the Evolutionary Origins of the Immunoglobulin Fold

A distributed look-up architecture for text mining applications using MapReduce

A graphic editor for analyzing signal-transduction pathways

A knowledge model for analysis and simulation of regulatory networks.

A recipe for high impact

A spatial map of olfactory receptor expression in the Drosophila antenna.

Advancing science through mining libraries, ontologies, and communities

Analysis of Drosophila segmentation network identifies a JNK pathway factor overexpressed in kidney cancer.

Analysis of a 69-kb contiguous genomic sequence at a putative tumor suppressor gene locus on human chromosome 6q27.

Automated microfluidic platform for dynamic and combinatorial drug screening of tumor organoids

Automatically identifying gene/protein terms in MEDLINE abstracts.

Benchmarking ontologies: bigger or better?

Birth and death of protein domains: a simple model of evolution explains power law behavior

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

Centralized scientific communities are less likely to generate replicable results

Choosing experiments to accelerate collective discovery

Classification of common human diseases derived from shared genetic and environmental determinants

Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis

Conjunction of factors triggering waves of seasonal influenza

Corrigendum: The BioPAX community standard for pathway data sharing

Dissecting schizophrenia phenotypic variation: the contribution of genetic variation, environmental exposures, and gene–environment interactions

Emergent behavior of growing knowledge about molecular interactions.

Environmental and state-level regulatory factors affect the incidence of autism and intellectual disability

Environmental pollution is associated with increased risk of psychiatric disorders in the US and Denmark

Erratum: Corrigendum: The BioPAX community standard for pathway data sharing

Estimating heritability and genetic correlations from large health datasets in the absence of genetic data

Evolutionary relationships of eukaryotic kingdoms

Exon/intron structure of aldehyde dehydrogenase genes supports the "introns-late" theory.

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

Genetic similarity between cancers and comorbid Mendelian diseases identifies candidate driver genes

Getting started in text mining: part two.

Health ROI as a measure of misalignment of biomedical needs and resources

How many scientific papers should be retracted?

How to get the most out of your curation effort

Human aldehyde dehydrogenase gene family.

Human and mouse orthologs of a new ATP-binding cassette gene, ABCG4.

Imitating manual curation of text-mined facts in biomedicine

Imitating manual curation of text-mined facts in biomedicine

Immunity-related genes and gene families in Anopheles gambiae

Listening to viral tongues: comparing viral trees using a stochastic context-free grammar.

Looking at cerebellar malformations through text-mined interactomes of mice and humans

Measurable health effects associated with the daylight saving time shift

Mining biomedical texts for disease-related pathways

Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding

Network properties of genes harboring inherited disease mutations

New directions in biomedical text annotation: definitions, guidelines and corpus construction

Novel opportunities for computational biology and sociology in drug discovery.

Observable variations in human sex ratio at birth

Of truth and pathways: chasing bits of information through myriads of articles.

Origin of the metazoan phyla: Molecular clocks confirm paleontological estimates ⬇️

Patchwork of contrasting medication cultures across the USA

Philosophy of science. Machine science

Postnatal immune activation causes social deficits in a mouse model of tuberous sclerosis: Role of microglia and clinical implications

Probabilistic inference of molecular networks from noisy data sources

Probing genetic overlap among complex human phenotypes.

Quantifying the impact and extent of undocumented biomedical synonymy

Quantitative systems-level determinants of human genes targeted by successful drugs.

Quick assessment of similarity of two sequences by comparison of their L-tuple frequencies

RIDDLE: Race and ethnicity Imputation from Disease history with Deep LEarning.

Representation of probabilistic scientific knowledge

Representation of research hypotheses ⬇️

Response by Cokol et al.

Seeking a new biology through text mining

Self-correcting maps of molecular pathways

Six senses in the literature. The bleak sensory landscape of biomedical texts

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

The BioPAX community standard for pathway data sharing

The Genomic Sequence of the Accidental Pathogen Legionella pneumophila

The human ATP-binding cassette (ABC) transporter superfamily

Tools for visualization and integration of intermediate sequencing results in large disease gene discovery projects.

Tradition and Innovation in Scientists’ Research Strategies

Ultra-multiplexed analysis of single-cell dynamics reveals logic rules in differentiation

Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites

Understanding Toxoplasmosis in the United States Through "Large Data" Analyses

Using BLAST for identifying gene and protein names in journal articles.