Lista de obras - Mario Nicodemi - Dominio Público Uruguay

8-oxodG accumulation within super-enhancers marks fragile CTCF-mediated chromatin loops

artículo científico publicado en 2022

A Polymer Physics Investigation of the Architecture of the Murine Orthologue of the 7q11.23 Human Locus

artículo científico publicado en 2017

A model of the large-scale organization of chromatin

artículo científico

A novel approach to simulate gene-environment interactions in complex diseases

artículo científico publicado en 2010

A polymer model explains the complexity of large-scale chromatin folding

artículo científico publicado en 2013

A stochastic model dissects cell states in biological transition processes

artículo científico publicado en 2014

A thermodynamic switch for chromosome colocalization

artículo científico publicado en 2008

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

artículo científico publicado en 2017

Aggregation of fibrils and plaques in amyloid molecular systems

scientific article published on 12 October 2009

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

scientific article published on 17 May 2021

Challenges and guidelines toward 4D nucleome data and model standards

artículo científico publicado en 2018

Colocalization of multiple DNA loci: a physical mechanism

artículo científico publicado en 2012

Complex multi-enhancer contacts captured by genome architecture mapping.

artículo científico publicado en 2017

Complexity of chromatin folding is captured by the strings and binders switch model

artículo científico publicado en 2012

Computational approaches from polymer physics to investigate chromatin folding

artículo científico publicado en 2020

Conformation regulation of the X chromosome inactivation center: a model

artículo científico publicado en 2011

Creep of superconducting vortices in the limit of vanishing temperature: a fingerprint of off-equilibrium dynamics

scientific article published on 01 May 2001

Critical behavior and axis defining symmetry breaking in Hydra embryonic development

artículo científico publicado en 2012

Critical clusters and efficient dynamics for frustrated spin models

scientific article published on 01 March 1994

DNA loci cross-talk through thermodynamics

artículo científico publicado en 2009

Density fluctuations in a model for vibrated granular media

artículo científico publicado en 1999

Diffusion-based DNA target colocalization by thermodynamic mechanisms ⬇️

artículo científico publicado el 1 de noviembre de 2010

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

artículo científico publicado en 2018

Dynamic membrane patterning, signal localization and polarity in living cells.

artículo científico

Dynamically induced effective interaction in periodically driven granular mixtures

artículo científico publicado en 2006

Dynamics and thermodynamics of the spherical frustrated Blume-Emery-Griffiths model

artículo científico publicado en 2002

Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation

artículo científico publicado en 2016

Extrusion without a motor: a new take on the loop extrusion model of genome organization. ⬇️

artículo científico publicado en 2018

Finite driving rate and anisotropy effects in landslide modeling

scientific article published on 21 February 2006

Flow, ordering, and jamming of sheared granular suspensions

artículo científico publicado en 2008

Glass-glass transition and new dynamical singularity points in an analytically solvable p-spin glasslike model

artículo científico publicado en 2004

Granular dynamics, jamming, rheology and instabilities

artículo científico publicado en 2007

Granular packs under vertical tapping: structure evolution, grain motion, and dynamical heterogeneities

artículo científico publicado en 2007

Granular species segregation under vertical tapping: effects of size, density, friction, and shaking amplitude

artículo científico publicado en 2006

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

artículo científico publicado en 2015

Jamming phase diagram for frictional particles

artículo científico publicado en 2011

Jamming transition in granular media: a mean-field approximation and numerical simulations

artículo científico publicado en 2005

Mechanics and dynamics of X-chromosome pairing at X inactivation

artículo científico publicado en 2008

Models of chromosome structure

artículo científico publicado en 2014

Models of polymer physics for the architecture of the cell nucleus

artículo científico publicado en 2018

Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin.

artículo científico publicado en 2018

Nonequilibrium Chromosome Looping via Molecular Slip Links

artículo científico publicado en 2017

Peak effect in a driven lattice gas model

scientific article published on 11 April 2003

Percolation and cluster Monte Carlo dynamics for spin models

scientific article published on 01 July 1996

Performance of genetic programming to extract the trend in noisy data series

Phenomenology and theory of horizontally oscillated granular mixtures

artículo científico publicado en 2007

Physical mechanisms behind the large scale features of chromatin organization

artículo científico publicado en 2014

Polymer Physics of the Large-Scale Structure of Chromatin

artículo científico publicado en 2016

Polymer models of chromatin organization

artículo científico publicado en 2013

Polymer models of the hierarchical folding of the Hox-B chromosomal locus.

artículo científico publicado en 2016

Polymer models of the organization of chromosomes in the nucleus of cells

Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation

artículo científico publicado en 2020

Polymer physics of chromosome large-scale 3D organisation

artículo científico publicado en 2016

Polymer physics predicts the effects of structural variants on chromatin architecture.

artículo científico publicado en 2018

Polymer physics, scaling and heterogeneity in the spatial organisation of chromosomes in the cell nucleus

Predicting chromatin architecture from models of polymer physics

artículo científico publicado en 2017

Preformed chromatin topology assists transcriptional robustness of Shh during limb development

artículo científico publicado en 2019

Probability distribution of inherent states in models of granular media and glasses

artículo científico publicado en 2002

Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

artículo científico publicado en 2021

RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation.

artículo científico publicado en 2017

Segregation in fluidized versus tapped packs

scientific article published on 02 November 2004

Self-assembly and DNA binding of the blocking factor in x chromosome inactivation

artículo científico publicado en 2007

Shear instabilities in granular mixtures

artículo científico publicado en 2005

Shear- and vibration-induced order-disorder transitions in granular media

artículo científico publicado en 2007

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains

artículo científico publicado en 2018

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation

artículo científico publicado en 2016

Single-cell states in the estrogen response of breast cancer cell lines

artículo científico publicado en 2014

Size segregation in granular media induced by phase transition

artículo científico publicado en 2005

Slow relaxation and compaction of granular systems

artículo científico publicado en 2005

Stochastic transitions and jamming in granular pipe flow

scientific article published on 30 March 2011

Structure of the human chromosome interaction network

artículo científico publicado en 2017

Symmetry breaking mechanism for epithelial cell polarization.

artículo científico publicado en 2009

Symmetry-breaking model for X-chromosome inactivation

artículo científico publicado en 2007

The colocalization transition of homologous chromosomes at meiosis.

artículo científico publicado en 2008

Thermodynamic pathways to genome spatial organization in the cell nucleus

artículo científico publicado en 2009

Thermodynamics and statistical mechanics of dense granular media

artículo científico publicado en 2006

Thermodynamics and statistical mechanics of frozen systems in inherent states

artículo científico publicado en 2002

Universal Fluctuations in Correlated Systems

artículo científico publicado en 2000

Universality in solar flare and earthquake occurrence

artículo científico publicado en 2006

Lista de obras de Mario Nicodemi

8-oxodG accumulation within super-enhancers marks fragile CTCF-mediated chromatin loops

A Polymer Physics Investigation of the Architecture of the Murine Orthologue of the 7q11.23 Human Locus

A model of the large-scale organization of chromatin

A novel approach to simulate gene-environment interactions in complex diseases

A polymer model explains the complexity of large-scale chromatin folding

A stochastic model dissects cell states in biological transition processes

A thermodynamic switch for chromosome colocalization

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Aggregation of fibrils and plaques in amyloid molecular systems

CTCF mediates dosage- and sequence-context-dependent transcriptional insulation by forming local chromatin domains

Challenges and guidelines toward 4D nucleome data and model standards

Colocalization of multiple DNA loci: a physical mechanism

Complex multi-enhancer contacts captured by genome architecture mapping.

Complexity of chromatin folding is captured by the strings and binders switch model

Computational approaches from polymer physics to investigate chromatin folding

Conformation regulation of the X chromosome inactivation center: a model

Creep of superconducting vortices in the limit of vanishing temperature: a fingerprint of off-equilibrium dynamics

Critical behavior and axis defining symmetry breaking in Hydra embryonic development

Critical clusters and efficient dynamics for frustrated spin models

DNA loci cross-talk through thermodynamics

Density fluctuations in a model for vibrated granular media

Diffusion-based DNA target colocalization by thermodynamic mechanisms ⬇️

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis

Dynamic membrane patterning, signal localization and polarity in living cells.

Dynamically induced effective interaction in periodically driven granular mixtures

Dynamics and thermodynamics of the spherical frustrated Blume-Emery-Griffiths model

Erratum to: Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation

Extrusion without a motor: a new take on the loop extrusion model of genome organization. ⬇️

Finite driving rate and anisotropy effects in landslide modeling

Flow, ordering, and jamming of sheared granular suspensions

Glass-glass transition and new dynamical singularity points in an analytically solvable p-spin glasslike model

Granular dynamics, jamming, rheology and instabilities

Granular packs under vertical tapping: structure evolution, grain motion, and dynamical heterogeneities

Granular species segregation under vertical tapping: effects of size, density, friction, and shaking amplitude

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Jamming phase diagram for frictional particles

Jamming transition in granular media: a mean-field approximation and numerical simulations

Mechanics and dynamics of X-chromosome pairing at X inactivation

Models of chromosome structure

Models of polymer physics for the architecture of the cell nucleus

Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin.

Nonequilibrium Chromosome Looping via Molecular Slip Links

Peak effect in a driven lattice gas model

Percolation and cluster Monte Carlo dynamics for spin models

Performance of genetic programming to extract the trend in noisy data series

Phenomenology and theory of horizontally oscillated granular mixtures

Physical mechanisms behind the large scale features of chromatin organization

Polymer Physics of the Large-Scale Structure of Chromatin

Polymer models of chromatin organization

Polymer models of the hierarchical folding of the Hox-B chromosomal locus.

Polymer models of the organization of chromosomes in the nucleus of cells

Polymer physics indicates chromatin folding variability across single-cells results from state degeneracy in phase separation

Polymer physics of chromosome large-scale 3D organisation

Polymer physics predicts the effects of structural variants on chromatin architecture.

Polymer physics, scaling and heterogeneity in the spatial organisation of chromosomes in the cell nucleus

Predicting chromatin architecture from models of polymer physics

Preformed chromatin topology assists transcriptional robustness of Shh during limb development

Probability distribution of inherent states in models of granular media and glasses

Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation

RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation.

Segregation in fluidized versus tapped packs

Self-assembly and DNA binding of the blocking factor in x chromosome inactivation

Shear instabilities in granular mixtures

Shear- and vibration-induced order-disorder transitions in granular media

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains

Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation

Single-cell states in the estrogen response of breast cancer cell lines

Size segregation in granular media induced by phase transition

Slow relaxation and compaction of granular systems

Stochastic transitions and jamming in granular pipe flow

Structure of the human chromosome interaction network

Symmetry breaking mechanism for epithelial cell polarization.

Symmetry-breaking model for X-chromosome inactivation

The colocalization transition of homologous chromosomes at meiosis.

Thermodynamic pathways to genome spatial organization in the cell nucleus

Thermodynamics and statistical mechanics of dense granular media

Thermodynamics and statistical mechanics of frozen systems in inherent states

Universal Fluctuations in Correlated Systems

Universality in solar flare and earthquake occurrence