Lista de obras - Henri Orland - Dominio Público Uruguay

Ab initio sampling of transition paths by conditioned Langevin dynamics.

artículo científico publicado en 2017

Absence of knots in known RNA structures.

artículo científico publicado en 2015

Accelerated stochastic sampling of discrete statistical systems.

artículo científico publicado en 2010

Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling.

artículo científico publicado en 2011

Anharmonicity and Self-Similarity of the Free Energy Landscape of ProteinG

scientific article published in Physical Review Letters

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

artículo científico publicado en 2011

Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations.

artículo científico publicado en 2016

Block copolymer films with free interfaces: ordering by nanopatterned substrates

artículo científico publicado en 2012

Checking for optimal solutions in some NP-complete problems

artículo científico publicado en 2005

Classification and predictions of RNA pseudoknots based on topological invariants ⬇️

artículo científico publicado en 2016

Coherent states formulation of polymer field theory.

artículo científico publicado en 2014

Computational assembly of polymorphic amyloid fibrils reveals stable aggregates

artículo científico publicado en 2013

Computing ion solvation free energies using the dipolar Poisson model

artículo científico publicado en 2009

Dielectric constant of ionic solutions: Combined effects of correlations and excluded volume

artículo científico publicado en 2018

Dielectric constant of ionic solutions: a field-theory approach

scientific article published on 29 May 2012

Dipolar Poisson-Boltzmann approach to ionic solutions: a mean field and loop expansion analysis.

artículo científico publicado en 2013

Dipolar Poisson-Boltzmann equation: ions and dipoles close to charge interfaces.

artículo científico publicado en 2007

Dominant folding pathways of a peptide chain from ab initio quantum-mechanical simulations

artículo científico publicado en 2011

Dominant pathways in protein folding.

artículo científico publicado en 2006

Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations.

artículo científico publicado en 2010

Dynamics of polymers: a mean-field theory.

artículo científico publicado en 2014

Dynamics of the critical wetting transition

scientific article published on 01 June 1985

Effect of Memory and Active Forces on Transition Path Time Distributions

scientific article published on 27 August 2018

Enumeration of RNA structures by matrix models

artículo científico publicado en 2005

Erratum: "Dipolar Poisson-Boltzmann approach to ionic solutions: A mean field and loop expansion analysis" [J. Chem. Phys. 139, 164909 (2013)]

scientific article published on 01 September 2018

Fluctuations in the ensemble of reaction pathways

artículo científico publicado en 2011

Generalized Poland-Scheraga model for DNA hybridization.

artículo científico publicado en 2004

Generating transition paths by Langevin bridges.

artículo científico publicado en 2011

Impact of loop statistics on the thermodynamics of RNA folding

scientific article published on 24 July 2008

Ionic profiles close to dielectric discontinuities: Specific ion-surface interactions ⬇️

artículo científico publicado en 2016

Irrelevance of bulk symmetry to critical wetting

artículo científico publicado en 1986

Knotted vs. unknotted proteins: evidence of knot-promoting loops

artículo científico publicado en 2010

Low-temperature properties of superconducting materials on sublattice structures

artículo científico publicado en 1989

MISTRAL: a tool for energy-based multiple structural alignment of proteins

artículo científico publicado en 2009

Manning condensation in two dimensions.

artículo científico publicado en 2006

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots

artículo científico publicado en 2012

Mechanism of thermal renaturation and hybridization of nucleic acids: Kramers' process and universality in Watson-Crick base pairing.

artículo científico publicado en 2009

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

Organization of Block Copolymers using NanoImprint Lithography: Comparison of Theory and Experiments

artículo científico publicado en 2011

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics

artículo científico publicado en 2006

Partially folded states of proteins: characterization by X-ray scattering

scientific article published on 01 December 1995

Phase Behavior of DNA in the Presence of DNA-Binding Proteins. ⬇️

artículo científico publicado en 2016

Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes ⬇️

artículo científico publicado en 2015

Propagation in random media: Calculation of the effective dispersive permittivity by use of the replica method

artículo científico publicado en 1995

Quantitative protein dynamics from dominant folding pathways

artículo científico publicado en 2007

Real symmetric random matrices and replicas

artículo científico publicado en 2006

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization

scientific article published on 01 June 2011

Steepest descent calculation of RNA pseudoknots.

artículo científico publicado en 2005

TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots

artículo científico publicado en 2011

Tailoring nanostructures using copolymer nanoimprint lithography

scientific article published on 21 March 2012

Test-charge theory for the electric double layer

artículo científico publicado en 2004

The elusive quest for RNA knots

artículo científico publicado en 2016

Thermodynamics of Ising models with layered randomness: Exact solutions on square and triangular lattices

artículo científico publicado en 1989

Topological classification of RNA structures

artículo científico publicado en 2008

Topology of pseudoknotted homopolymers

scientific article published on 03 March 2006

Transition path time distributions

artículo científico publicado en 2017

Wetting of a disordered substrate

artículo científico publicado en 1985

Wetting of a disordered substrate: Exact critical behavior in two dimensions

artículo científico publicado en 1986

Lista de obras de Henri Orland

Ab initio sampling of transition paths by conditioned Langevin dynamics.

Absence of knots in known RNA structures.

Accelerated stochastic sampling of discrete statistical systems.

Adapting Poisson-Boltzmann to the self-consistent mean field theory: application to protein side-chain modeling.

Anharmonicity and Self-Similarity of the Free Energy Landscape of ProteinG

AquaSAXS: a web server for computation and fitting of SAXS profiles with non-uniformally hydrated atomic models

Beyond Poisson-Boltzmann: Numerical Sampling of Charge Density Fluctuations.

Block copolymer films with free interfaces: ordering by nanopatterned substrates

Checking for optimal solutions in some NP-complete problems

Classification and predictions of RNA pseudoknots based on topological invariants ⬇️

Coherent states formulation of polymer field theory.

Computational assembly of polymorphic amyloid fibrils reveals stable aggregates

Computing ion solvation free energies using the dipolar Poisson model

Dielectric constant of ionic solutions: Combined effects of correlations and excluded volume

Dielectric constant of ionic solutions: a field-theory approach

Dipolar Poisson-Boltzmann approach to ionic solutions: a mean field and loop expansion analysis.

Dipolar Poisson-Boltzmann equation: ions and dipoles close to charge interfaces.

Dominant folding pathways of a peptide chain from ab initio quantum-mechanical simulations

Dominant pathways in protein folding.

Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations.

Dynamics of polymers: a mean-field theory.

Dynamics of the critical wetting transition

Effect of Memory and Active Forces on Transition Path Time Distributions

Enumeration of RNA structures by matrix models

Erratum: "Dipolar Poisson-Boltzmann approach to ionic solutions: A mean field and loop expansion analysis" [J. Chem. Phys. 139, 164909 (2013)]

Fluctuations in the ensemble of reaction pathways

Generalized Poland-Scheraga model for DNA hybridization.

Generating transition paths by Langevin bridges.

Impact of loop statistics on the thermodynamics of RNA folding

Ionic profiles close to dielectric discontinuities: Specific ion-surface interactions ⬇️

Irrelevance of bulk symmetry to critical wetting

Knotted vs. unknotted proteins: evidence of knot-promoting loops

Low-temperature properties of superconducting materials on sublattice structures

MISTRAL: a tool for energy-based multiple structural alignment of proteins

Manning condensation in two dimensions.

McGenus: a Monte Carlo algorithm to predict RNA secondary structures with pseudoknots

Mechanism of thermal renaturation and hybridization of nucleic acids: Kramers' process and universality in Watson-Crick base pairing.

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

Organization of Block Copolymers using NanoImprint Lithography: Comparison of Theory and Experiments

PDB_Hydro: incorporating dipolar solvents with variable density in the Poisson-Boltzmann treatment of macromolecule electrostatics

Partially folded states of proteins: characterization by X-ray scattering

Phase Behavior of DNA in the Presence of DNA-Binding Proteins. ⬇️

Probing the binding affinity of amyloids to reduce toxicity of oligomers in diabetes ⬇️

Propagation in random media: Calculation of the effective dispersive permittivity by use of the replica method

Quantitative protein dynamics from dominant folding pathways

Real symmetric random matrices and replicas

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization

Steepest descent calculation of RNA pseudoknots.

TT2NE: a novel algorithm to predict RNA secondary structures with pseudoknots

Tailoring nanostructures using copolymer nanoimprint lithography

Test-charge theory for the electric double layer

The elusive quest for RNA knots

Thermodynamics of Ising models with layered randomness: Exact solutions on square and triangular lattices

Topological classification of RNA structures

Topology of pseudoknotted homopolymers

Transition path time distributions

Wetting of a disordered substrate

Wetting of a disordered substrate: Exact critical behavior in two dimensions