Lista de obras - Ralf Bundschuh - Dominio Público Uruguay

A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction

artículo científico publicado en 2019

A performance enhanced PSI-BLAST based on hybrid alignment

artículo científico publicado en 2010

A practical approach to significance assessment in alignment with gaps.

artículo científico publicado en 2006

A puzzle in DNA biophysics.

artículo científico publicado en 2006

A quantitative model of nucleosome dynamics.

artículo científico publicado en 2011

A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

artículo científico publicado en 2007

Analytical description of finite size effects for RNA secondary structures

artículo científico publicado en 2004

Anomalous scaling in nanopore translocation of structured heteropolymers

artículo científico publicado en 2009

Asymmetric exclusion process and extremal statistics of random sequences

artículo científico publicado en 2002

CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq

scientific article published on 10 February 2020

Comment on "Simplest Possible Self-Organized Critical System"

artículo científico publicado en 1996

Comparison of insertional RNA editing in Myxomycetes

artículo científico publicado en 2012

Computational approaches to insertional RNA editing

artículo científico publicado en 2007

Computational prediction of RNA editing sites

artículo científico publicado en 2004

Contribution of ribosomal residues to P-site tRNA binding

artículo científico publicado en 2009

Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model

artículo científico publicado en 2014

Coupled dynamics of RNA folding and nanopore translocation

scientific article published on 10 November 2005

DNA sequence influences hexasome orientation to regulate DNA accessibility.

artículo científico publicado en 2019

Delocalization transitions of semiflexible manifolds

artículo científico publicado en 2002

Directed polymers in high dimensions

artículo científico publicado en 1996

Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).

artículo científico publicado en 2008

Effects of long-range correlations in DNA on sequence alignment score statistics.

artículo científico publicado en 2007

Epigenetics meets genetics in acute myeloid leukemia: clinical impact of a novel seven-gene score

artículo científico publicado en 2013

Eμ-TCL1xMyc: A Novel Mouse Model for Concurrent CLL and B-Cell Lymphoma

scientific article published on 11 July 2019

Finite width model sequence comparison

artículo científico publicado en 2004

Formation of the open complex by bacterial RNA polymerase--a quantitative model

artículo científico publicado en 2008

Genome annotation in the presence of insertional RNA editing.

artículo científico publicado en 2008

Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia

artículo científico publicado en 2012

Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria

scientific article published on 01 November 2019

Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9.

artículo científico publicado en 2016

Inhibition of cytoplasmic cap methylation identifies 5' TOP mRNAs as recapping targets and reveals recapping sites downstream of native 5' ends

artículo científico publicado en 2020

Interplay between single-stranded binding proteins on RNA secondary structure.

artículo científico publicado en 2013

Large scale genotype-phenotype correlation analysis based on phylogenetic trees

artículo científico publicado en 2007

Melting of branched RNA molecules

artículo científico publicado en 2008

Methyl-CpG/MBD2 Interaction Requires Minimum Separation and Exhibits Minimal Sequence Specificity.

artículo científico publicado en 2016

Model for codon position bias in RNA editing

article by Tsunglin Liu & Ralf Bundschuh published 18 August 2005 in Physical Review Letters

Model for folding and aggregation in RNA secondary structures

scientific article published on 12 January 2006

Modeling DNA unzipping in the presence of bound proteins

artículo científico publicado en 2005

Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure

artículo científico publicado en 2009

MutS homolog sliding clamps shield the DNA from binding proteins

artículo científico publicado en 2018

Numerical method for accessing the universal scaling function for a multiparticle discrete time asymmetric exclusion process

artículo científico publicado en 2005

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data

artículo científico publicado en 2014

Quantification of the differences between quenched and annealed averaging for RNA secondary structures

scientific article published on 12 December 2005

Quantitative models for accelerated protein dissociation from nucleosomal DNA.

artículo científico publicado en 2014

RNA structure generates natural cooperativity between single-stranded RNA binding proteins targeting 5' and 3'UTRs.

artículo científico publicado en 2014

Rapid significance estimation in local sequence alignment with gaps

artículo científico publicado en 2002

RiboProP: A Probabilistic Ribosome Positioning Algorithm for Ribosome Profiling

article

SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches

artículo científico publicado en 2009

Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches

artículo científico publicado en 2008

Small RNAs in tomato fruit and leaf development.

artículo científico publicado en 2007

Statistical mechanics of secondary structures formed by random RNA sequences.

artículo científico publicado en 2002

Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome

artículo científico publicado en 2012

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

artículo científico publicado en 2014

The flexibility of locally melted DNA

artículo científico publicado en 2009

The role of annealing and fragmentation in human tau aggregation dynamics

scientific article published on 11 February 2019

The role of dimerization in noise reduction of simple genetic networks

artículo científico publicado en 2003

Translocation of structured polynucleotides through nanopores

artículo científico publicado en 2004

Unified approach to partition functions of RNA secondary structures.

artículo científico publicado en 2013

Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets

scientific article published on 05 June 2020

Lista de obras de Ralf Bundschuh

A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction

A performance enhanced PSI-BLAST based on hybrid alignment

A practical approach to significance assessment in alignment with gaps.

A puzzle in DNA biophysics.

A quantitative model of nucleosome dynamics.

A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

Analytical description of finite size effects for RNA secondary structures

Anomalous scaling in nanopore translocation of structured heteropolymers

Asymmetric exclusion process and extremal statistics of random sequences

CLEAR: coverage-based limiting-cell experiment analysis for RNA-seq

Comment on "Simplest Possible Self-Organized Critical System"

Comparison of insertional RNA editing in Myxomycetes

Computational approaches to insertional RNA editing

Computational prediction of RNA editing sites

Contribution of ribosomal residues to P-site tRNA binding

Correlation of Klebsiella pneumoniae comparative genetic analyses with virulence profiles in a murine respiratory disease model

Coupled dynamics of RNA folding and nanopore translocation

DNA sequence influences hexasome orientation to regulate DNA accessibility.

Delocalization transitions of semiflexible manifolds

Directed polymers in high dimensions

Distant homology detection using a LEngth and STructure-based sequence Alignment Tool (LESTAT).

Effects of long-range correlations in DNA on sequence alignment score statistics.

Epigenetics meets genetics in acute myeloid leukemia: clinical impact of a novel seven-gene score

Eμ-TCL1xMyc: A Novel Mouse Model for Concurrent CLL and B-Cell Lymphoma

Finite width model sequence comparison

Formation of the open complex by bacterial RNA polymerase--a quantitative model

Genome annotation in the presence of insertional RNA editing.

Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia

Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria

Host Double Strand Break Repair Generates HIV-1 Strains Resistant to CRISPR/Cas9.

Inhibition of cytoplasmic cap methylation identifies 5' TOP mRNAs as recapping targets and reveals recapping sites downstream of native 5' ends

Interplay between single-stranded binding proteins on RNA secondary structure.

Large scale genotype-phenotype correlation analysis based on phylogenetic trees

Melting of branched RNA molecules

Methyl-CpG/MBD2 Interaction Requires Minimum Separation and Exhibits Minimal Sequence Specificity.

Model for codon position bias in RNA editing

Model for folding and aggregation in RNA secondary structures

Modeling DNA unzipping in the presence of bound proteins

Modeling the interplay of single-stranded binding proteins and nucleic acid secondary structure

MutS homolog sliding clamps shield the DNA from binding proteins

Numerical method for accessing the universal scaling function for a multiparticle discrete time asymmetric exclusion process

PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data

Quantification of the differences between quenched and annealed averaging for RNA secondary structures

Quantitative models for accelerated protein dissociation from nucleosomal DNA.

RNA structure generates natural cooperativity between single-stranded RNA binding proteins targeting 5' and 3'UTRs.

Rapid significance estimation in local sequence alignment with gaps

RiboProP: A Probabilistic Ribosome Positioning Algorithm for Ribosome Profiling

SIB-BLAST: a web server for improved delineation of true and false positives in PSI-BLAST searches

Simple is beautiful: a straightforward approach to improve the delineation of true and false positives in PSI-BLAST searches

Small RNAs in tomato fruit and leaf development.

Statistical mechanics of secondary structures formed by random RNA sequences.

Systematic investigation of insertional and deletional RNA-DNA differences in the human transcriptome

The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

The flexibility of locally melted DNA

The role of annealing and fragmentation in human tau aggregation dynamics

The role of dimerization in noise reduction of simple genetic networks

Translocation of structured polynucleotides through nanopores

Unified approach to partition functions of RNA secondary structures.

Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3'UTR intron-containing NMD targets