Lista de obras - Julio R. Banga - Dominio Público Uruguay

A consensus approach for estimating the predictive accuracy of dynamic models in biology

artículo científico publicado en 2015

A generalized Fisher equation and its utility in chemical kinetics

artículo científico publicado en 2010

A hybrid approach for efficient and robust parameter estimation in biochemical pathways

artículo científico publicado en 2005

A protocol for dynamic model calibration

scientific article published on 08 September 2021

A systematic approach to plant-wide control based on thermodynamics

article

A systematic approach to plant-wide control based on thermodynamics

A thermodynamic based plant-wide control design procedure of the tennessee eastman process

article

AMIGO, a toolbox for advanced model identification in systems biology using global optimization ⬇️

artículo científico publicado el 17 de junio de 2011

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.

artículo científico publicado en 2016

An iterative identification procedure for dynamic modeling of biochemical networks

artículo científico publicado en 2010

Automated Design Framework for Synthetic Biology Exploiting Pareto Optimality

artículo científico publicado en 2017

Benchmarking optimization methods for parameter estimation in large kinetic models.

artículo científico publicado en 2019

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

artículo científico publicado en 2015

CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks

scientific article published on 06 April 2012

Characterizing Multistationarity Regimes in Biochemical Reaction Networks ⬇️

artículo científico publicado el 3 de julio de 2012

Correction: Characterizing Multistationarity Regimes in Biochemical Reaction Networks

artículo científico publicado en 2013

DOTcvpSB, a software toolbox for dynamic optimization in systems biology

artículo científico publicado en 2009

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

artículo científico publicado en 2017

Design Principles of Biological Oscillators through Optimization: Forward and Reverse Analysis

artículo científico publicado en 2016

Dynamic Optimization of Nonlinear Bioreactors

Dynamic optimization of bioprocesses: efficient and robust numerical strategies

artículo científico publicado en 2005

Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.

artículo científico publicado en 2012

Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation ⬇️

artículo científico publicado en 2017

Efficient and robust multi-objective optimization of food processing: A novel approach with application to thermal sterilization

Enabling network inference methods to handle missing data and outliers

artículo científico publicado en 2015

Exploring multiplicity conditions in enzymatic reaction networks

artículo científico publicado en 2009

Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models

scientific article published on 03 July 2019

GenSSI 2.0: Multi-experiment structural identifiability analysis of SBML models.

artículo científico publicado en 2017

GenSSI: a software toolbox for structural identifiability analysis of biological models

artículo científico publicado en 2011

Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems

artículo científico publicado en 2022

Global dynamic optimization approach to predict activation in metabolic pathways

artículo científico publicado en 2014

Hybrid optimization method with general switching strategy for parameter estimation

artículo científico publicado en 2008

Improved Optimization Methods for the Multiobjective Design of Bioprocesses

Inference of complex biological networks: distinguishability issues and optimization-based solutions

artículo científico publicado en 2011

Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models

artículo científico publicado en 2010

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

artículo científico publicado en 2014

MIDER: network inference with mutual information distance and entropy reduction

artículo científico publicado en 2014

Metabolic engineering with multi-objective optimization of kinetic models

artículo científico publicado en 2016

Multi-criteria optimization of regulation in metabolic networks

artículo científico publicado en 2012

Multicriteria global optimization for biocircuit design

artículo científico publicado en 2014

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

artículo científico publicado en 2006

On the relationship between sloppiness and identifiability

artículo científico publicado en 2016

Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation.

artículo científico publicado en 2015

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework

artículo científico publicado en 2018

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework

artículo científico publicado en 2018

Optimization in computational systems biology

artículo científico publicado en 2008

PREMER: a Tool to Infer Biological Networks

artículo científico publicado en 2017

Parameter estimation and optimal experimental design.

artículo científico publicado en 2008

Parameter estimation in biochemical pathways: a comparison of global optimization methods

artículo científico publicado en 2003

Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems

artículo científico publicado en 2017

Power-law models of signal transduction pathways

artículo científico publicado en 2007

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

artículo científico publicado en 2014

Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach

artículo científico publicado en 2015

Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster

artículo científico publicado en 2013

Robust and efficient parameter estimation in dynamic models of biological systems

artículo científico publicado en 2015

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits

artículo científico publicado en 2016

Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems ⬇️

artículo científico publicado el 12 de agosto de 2013

Stabilization of inhomogeneous patterns in a diffusion-reaction system under structural and parametric uncertainties

artículo científico publicado en 2006

Structural identifiability of systems biology models: a critical comparison of methods

artículo científico publicado en 2011

Use of a generalized fisher equation for global optimization in chemical kinetics

artículo científico publicado en 2011

Using optimal control to understand complex metabolic pathways

artículo científico publicado en 2020

Lista de obras de Julio R. Banga

A consensus approach for estimating the predictive accuracy of dynamic models in biology

A generalized Fisher equation and its utility in chemical kinetics

A hybrid approach for efficient and robust parameter estimation in biochemical pathways

A protocol for dynamic model calibration

A systematic approach to plant-wide control based on thermodynamics

A systematic approach to plant-wide control based on thermodynamics

A thermodynamic based plant-wide control design procedure of the tennessee eastman process

AMIGO, a toolbox for advanced model identification in systems biology using global optimization ⬇️

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.

An iterative identification procedure for dynamic modeling of biochemical networks

Automated Design Framework for Synthetic Biology Exploiting Pareto Optimality

Benchmarking optimization methods for parameter estimation in large kinetic models.

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology

CRNreals: a toolbox for distinguishability and identifiability analysis of biochemical reaction networks

Characterizing Multistationarity Regimes in Biochemical Reaction Networks ⬇️

Correction: Characterizing Multistationarity Regimes in Biochemical Reaction Networks

DOTcvpSB, a software toolbox for dynamic optimization in systems biology

Data-driven reverse engineering of signaling pathways using ensembles of dynamic models

Design Principles of Biological Oscillators through Optimization: Forward and Reverse Analysis

Dynamic Optimization of Nonlinear Bioreactors

Dynamic optimization of bioprocesses: efficient and robust numerical strategies

Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.

Dynamical compensation and structural identifiability of biological models: Analysis, implications, and reconciliation ⬇️

Efficient and robust multi-objective optimization of food processing: A novel approach with application to thermal sterilization

Enabling network inference methods to handle missing data and outliers

Exploring multiplicity conditions in enzymatic reaction networks

Full observability and estimation of unknown inputs, states and parameters of nonlinear biological models

GenSSI 2.0: Multi-experiment structural identifiability analysis of SBML models.

GenSSI: a software toolbox for structural identifiability analysis of biological models

Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems

Global dynamic optimization approach to predict activation in metabolic pathways

Hybrid optimization method with general switching strategy for parameter estimation

Improved Optimization Methods for the Multiobjective Design of Bioprocesses

Inference of complex biological networks: distinguishability issues and optimization-based solutions

Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics

MIDER: network inference with mutual information distance and entropy reduction

Metabolic engineering with multi-objective optimization of kinetic models

Multi-criteria optimization of regulation in metabolic networks

Multicriteria global optimization for biocircuit design

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

On the relationship between sloppiness and identifiability

Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation.

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework

Optimality and identification of dynamic models in systems biology: an inverse optimal control framework

Optimization in computational systems biology

PREMER: a Tool to Infer Biological Networks

Parameter estimation and optimal experimental design.

Parameter estimation in biochemical pathways: a comparison of global optimization methods

Parameter identifiability analysis and visualization in large-scale kinetic models of biosystems

Power-law models of signal transduction pathways

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach

Reverse-engineering post-transcriptional regulation of gap genes in Drosophila melanogaster

Robust and efficient parameter estimation in dynamic models of biological systems

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits

Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems ⬇️

Stabilization of inhomogeneous patterns in a diffusion-reaction system under structural and parametric uncertainties

Structural identifiability of systems biology models: a critical comparison of methods

Use of a generalized fisher equation for global optimization in chemical kinetics

Using optimal control to understand complex metabolic pathways