Lista de obras - Allen Rodrigo - Dominio Público Uruguay

A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels.

artículo científico publicado en 2012

A Comment on Baum's Method for Combining Phylogenetic Trees

artículo científico publicado en 1993

A MODIFICATION TO WHEELER'S COMBINATORIAL WEIGHTS CALCULATIONS

artículo científico publicado en 1992

A heteroduplex method for detection of targeted sub-populations of bacterial communities

artículo científico publicado en 2002

A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree ⬇️

article

A statistical model to identify differentially expressed proteins in 2D PAGE gels

artículo científico publicado en 2009

An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes

artículo científico publicado en 2021

An information-rich character weighting procedure for parsimony analysis

artículo científico publicado en 1989

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges ⬇️

artículo científico publicado en 2011

Associations between HLA class I alleles and escape mutations in the hepatitis B virus core gene in New Zealand-resident Tongans

artículo científico publicado en 2010

Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes

artículo científico publicado en 2017

Calibrating the bootstrap test of monophyly

artículo científico publicado en 1993

Can Stomach Content and Microbiomes of Tuna Provide Near Real-Time Detection of Ecosystem Composition in the Pacific Ocean?

artículo científico publicado en 2022

Coalescent Entanglement and the Conditional Dependence of the Times to Common Ancestry of Mutually Exclusive Pairs of Individuals

artículo científico publicado en 2012

Coalescent estimates of HIV-1 generation time in vivo

artículo científico publicado en 1999

Combinability of Phylogenies and Bootstrap Confidence Envelopes

scientific article published on 01 December 1998

Computational Evaluation of the Strict Master and Random Template Models of Endogenous Retrovirus Evolution

artículo científico publicado en 2016

Consensus and Ancestral State HIV Vaccines

artículo científico publicado en 2003

Control of the False Discovery Rate Applied to the Detection of Positively Selected Amino Acid Sites

article

Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage

artículo científico publicado en 2020

Correction: Ultrafast Evolution and Loss of CRISPRs Following a Host Shift in a Novel Wildlife Pathogen, Mycoplasma gallisepticum.

artículo científico publicado en 2012

Covariability of V3 loop amino acids.

artículo científico publicado en 1996

Covariation of branch lengths in phylogenies of functionally related genes

artículo científico publicado en 2009

Cumulative viral evolutionary changes in chronic hepatitis B virus infection precedes hepatitis B e antigen seroconversion

artículo científico publicado en 2012

DNA barcoding of the endemic New Zealand leafroller moth genera, Ctenopseustis and Planotortrix

artículo científico publicado en 2009

DNA surveillance: web-based molecular identification of whales, dolphins, and porpoises.

artículo científico publicado en 2003

Dynamics of Syncytium-Inducing and Non-Syncytium-Inducing Type 1 Human Immunodeficiency Viruses during Primary Infection ⬇️

artículo científico publicado el 20 de noviembre de 1997

Ecstatic display calls of the Adélie penguin honestly predict male condition and breeding success

scholarly article

Editorial foreword

artículo científico publicado en 2004

Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage

scientific article published on 11 December 2019

Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars

artículo científico publicado en 2003

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

artículo científico publicado en 2002

Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden.

artículo científico publicado en 2006

Estimating the Ancestral States of a Continuous-Valued Character Using Squared-Change Parsimony: An Analytical Solution

article

Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.

artículo científico publicado en 2015

Evidence for reduced selection pressure on the hepatitis B virus core gene in hepatitis B e antigen-negative chronic hepatitis B.

artículo científico publicado en 2011

Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles.

artículo científico publicado en 1998

Evolution of relative synonymous codon usage in Human Immunodeficiency Virus type-1.

artículo científico publicado en 2005

Examination of Trichoderma phylogenies derived from ribosomal DNA sequence data

article

Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs

artículo científico publicado en 2017

Feline Lentivirus Evolution in Cross-Species Infection Reveals Extensive G-to-A Mutation and Selection on Key Residues in the Viral Polymerase.

artículo científico publicado en 2006

Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase

artículo científico publicado en 2006

Four jumping spider genera of the Cocalodes-group are monophyletic with genera of the Spartaeinae (Araneae: Salticidae)

artículo científico publicado en 1992

Frequency-dependent selection drives HBeAg seroconversion in chronic hepatitis B virus infection

artículo científico publicado en 2013

Genealogies from Time-Stamped Sequence Data

Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns

artículo científico publicado en 2000

HIV Quasispecies and Resampling

artículo científico publicado en 1996

HIV evolutionary genetics.

artículo científico publicado en 1999

HIV-1 transmission during early antiretroviral therapy: evaluation of two HIV-1 transmission events in the HPTN 052 prevention study

artículo científico publicado en 2013

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations

scientific article published on 22 October 2018

Human immunodeficiency virus type 1 molecular evolution and the measure of selection

artículo científico publicado en 1996

Identifying predictors of time-inhomogeneous viral evolutionary processes

scientific article published on July 2016

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

artículo científico publicado en 2002

Immunogen sequence: the fourth tier of AIDS vaccine design

artículo científico publicado en 2004

Inadequate Support for an Evolutionary Link Between the Metazoa and the Fungi

artículo científico publicado en 1994

Increased viral quasispecies evolution in HBeAg seroconverter patients treated with oral nucleoside therapy ⬇️

artículo científico publicado el 27 de septiembre de 2012

Inferring evolutionary rates using serially sampled sequences from several populations

artículo científico publicado en 2003

Integrating genealogy and epidemiology: the ancestral infection and selection graph as a model for reconstructing host virus histories.

artículo científico publicado en 2005

Maximum likelihood supertrees

artículo científico publicado en 2008

Measurably evolving populations

scientific article published in 2003

Modeling the site-specific variation of selection patterns along lineages

scholarly article

Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations.

artículo científico publicado en 2008

Models of microbiome evolution incorporating host and microbial selection.

artículo científico publicado en 2017

Molecular epidemiology of feline immunodeficiency virus in the domestic cat (Felis catus).

artículo científico publicado en 2009

Neutral Models of Microbiome Evolution

artículo científico publicado en 2015

Neutral models of short-term microbiome dynamics with host subpopulation structure and migration limitation.

artículo científico publicado en 2018

On Combining Cladograms

artículo científico publicado en 1996

On the use of bootstrapped topologies in coalescent-based Bayesian MCMC inference: a comparison of estimation and computational efficiencies

artículo científico publicado en 2009

Patterns of gut bacterial colonization in three primate species

artículo científico publicado en 2015

Pervasive genomic recombination of HIV-1 in vivo

artículo científico publicado en 2004

Phylogenetic analysis of feline immunodeficiency virus in feral and companion domestic cats of New Zealand

artículo científico publicado en 2006

Predicting demographic group structures based on DNA sequence data

artículo científico publicado en 2003

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Coalescent-based estimation of population parameters when the number of demes changes over time

artículo científico publicado en 2006

Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays

artículo científico publicado en 1997

Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies.

artículo científico publicado en 2018

Recombination in feline immunodeficiency virus from feral and companion domestic cats

artículo científico publicado en 2008

Recombination in feline lentiviral genomes during experimental cross-species infection

artículo científico publicado en 2006

SQUINT: a multiple alignment program and editor

article

Science incubators: synthesis centers and their role in the research ecosystem

artículo científico publicado en 2013

Selecting taxa to save or sequence: desirable criteria and a greedy solution

artículo científico publicado en 2008

Selection for human immunodeficiency virus type 1 recombinants in a patient with rapid progression to AIDS.

artículo científico publicado en 2002

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes

artículo científico publicado en 2006

Specific and general formulae for the number of band combinations for different colour-banding regimes

Surficial sediment‐heavy metal associations in the Avon‐Heathcote Estuary, New Zealand

article

Synthesis Centers as Critical Research Infrastructure

article

Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E.

artículo científico publicado en 2000

The Evolutionary Value of Helpful Microbes: A Response to Shapira.

artículo científico publicado en 2016

The distribution of feline immunodeficiency virus in tissue compartments of feral domestic cats

artículo científico publicado en 2010

The molecular biology and evolution of feline immunodeficiency viruses of cougars

artículo científico publicado en 2008

The perils of plenty: what are we going to do with all these genes?

artículo científico publicado en 2008

The principles and methods of phylogenetic systematics and its application to the taxonomy of the Pronocephalidae Looss, 1902 (Platyhelminthes: Digenea) ⬇️

1990 doctoral thesis by Allen Gerard Rodrigo at University of Canterbury

Time-dependent rates of molecular evolution

scientific article published on 08 July 2011

Transient compartmentalization of simian immunodeficiency virus variants in the breast milk of african green monkeys

artículo científico publicado en 2013

Transition between stochastic evolution and deterministic evolution in the presence of selection: general theory and application to virology.

artículo científico publicado en 2001

Two Optimality Criteria for Selecting Subsets of Most Parsimonious Trees

scientific article published in 1992

Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum

artículo científico publicado en 2012

Using PEBBLE for the evolutionary analysis of serially sampled molecular sequences

artículo científico publicado en 2004

Using logistic regression models to predict breeding success in male Adélie penguins (Pygoscelis adeliae)

Using temporally spaced sequences to simultaneously estimate migration rates, mutation rate and population sizes in measurably evolving populations.

artículo científico publicado en 2004

ViPRA-Haplo: <i>De Novo</i> Reconstruction of Viral Populations Using Paired End Sequencing Data

artículo científico publicado en 2024

Viral Quasi-Species Evolution During Hepatitis Be Antigen Seroconversion

article

Lista de obras de Allen Rodrigo

A Bayesian model for classifying all differentially expressed proteins simultaneously in 2D PAGE gels.

A Comment on Baum's Method for Combining Phylogenetic Trees

A MODIFICATION TO WHEELER'S COMBINATORIAL WEIGHTS CALCULATIONS

A heteroduplex method for detection of targeted sub-populations of bacterial communities

A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree ⬇️

A statistical model to identify differentially expressed proteins in 2D PAGE gels

An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes

An information-rich character weighting procedure for parsimony analysis

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges ⬇️

Associations between HLA class I alleles and escape mutations in the hepatitis B virus core gene in New Zealand-resident Tongans

Bamboo Specialists from Two Mammalian Orders (Primates, Carnivora) Share a High Number of Low-Abundance Gut Microbes

Calibrating the bootstrap test of monophyly

Can Stomach Content and Microbiomes of Tuna Provide Near Real-Time Detection of Ecosystem Composition in the Pacific Ocean?

Coalescent Entanglement and the Conditional Dependence of the Times to Common Ancestry of Mutually Exclusive Pairs of Individuals

Coalescent estimates of HIV-1 generation time in vivo

Combinability of Phylogenies and Bootstrap Confidence Envelopes

Computational Evaluation of the Strict Master and Random Template Models of Endogenous Retrovirus Evolution

Consensus and Ancestral State HIV Vaccines

Control of the False Discovery Rate Applied to the Detection of Positively Selected Amino Acid Sites

Correction to: Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage

Correction: Ultrafast Evolution and Loss of CRISPRs Following a Host Shift in a Novel Wildlife Pathogen, Mycoplasma gallisepticum.

Covariability of V3 loop amino acids.

Covariation of branch lengths in phylogenies of functionally related genes

Cumulative viral evolutionary changes in chronic hepatitis B virus infection precedes hepatitis B e antigen seroconversion

DNA barcoding of the endemic New Zealand leafroller moth genera, Ctenopseustis and Planotortrix

DNA surveillance: web-based molecular identification of whales, dolphins, and porpoises.

Dynamics of Syncytium-Inducing and Non-Syncytium-Inducing Type 1 Human Immunodeficiency Viruses during Primary Infection ⬇️

Ecstatic display calls of the Adélie penguin honestly predict male condition and breeding success

Editorial foreword

Effective machine-learning assembly for next-generation amplicon sequencing with very low coverage

Epidemiology, genetic diversity, and evolution of endemic feline immunodeficiency virus in a population of wild cougars

Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data

Estimating population parameters using the structured serial coalescent with Bayesian MCMC inference when some demes are hidden.

Estimating the Ancestral States of a Continuous-Valued Character Using Squared-Change Parsimony: An Analytical Solution

Estimation of evolutionary parameters using short, random and partial sequences from mixed samples of anonymous individuals.

Evidence for reduced selection pressure on the hepatitis B virus core gene in hepatitis B e antigen-negative chronic hepatitis B.

Evolution of human immunodeficiency virus type 1 envelope sequences in infected individuals with differing disease progression profiles.

Evolution of relative synonymous codon usage in Human Immunodeficiency Virus type-1.

Examination of Trichoderma phylogenies derived from ribosomal DNA sequence data

Feeding strategy shapes gut metagenomic enrichment and functional specialization in captive lemurs

Feline Lentivirus Evolution in Cross-Species Infection Reveals Extensive G-to-A Mutation and Selection on Key Residues in the Viral Polymerase.

Feline lentivirus evolution in cross-species infection reveals extensive G-to-A mutation and selection on key residues in the viral polymerase

Four jumping spider genera of the Cocalodes-group are monophyletic with genera of the Spartaeinae (Araneae: Salticidae)

Frequency-dependent selection drives HBeAg seroconversion in chronic hepatitis B virus infection

Genealogies from Time-Stamped Sequence Data

Genetic analysis of viral variants selected in transmission of human immunodeficiency viruses to newborns

HIV Quasispecies and Resampling

HIV evolutionary genetics.

HIV-1 transmission during early antiretroviral therapy: evaluation of two HIV-1 transmission events in the HPTN 052 prevention study

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations

Human immunodeficiency virus type 1 molecular evolution and the measure of selection

Identifying predictors of time-inhomogeneous viral evolutionary processes

Immune-mediated positive selection drives human immunodeficiency virus type 1 molecular variation and predicts disease duration.

Immunogen sequence: the fourth tier of AIDS vaccine design

Inadequate Support for an Evolutionary Link Between the Metazoa and the Fungi

Increased viral quasispecies evolution in HBeAg seroconverter patients treated with oral nucleoside therapy ⬇️

Inferring evolutionary rates using serially sampled sequences from several populations

Integrating genealogy and epidemiology: the ancestral infection and selection graph as a model for reconstructing host virus histories.

Maximum likelihood supertrees

Measurably evolving populations

Modeling the site-specific variation of selection patterns along lineages

Modelling the evolution of protein coding sequences sampled from Measurably Evolving Populations.

Models of microbiome evolution incorporating host and microbial selection.

Molecular epidemiology of feline immunodeficiency virus in the domestic cat (Felis catus).

Neutral Models of Microbiome Evolution

Neutral models of short-term microbiome dynamics with host subpopulation structure and migration limitation.

On Combining Cladograms

On the use of bootstrapped topologies in coalescent-based Bayesian MCMC inference: a comparison of estimation and computational efficiencies

Patterns of gut bacterial colonization in three primate species

Pervasive genomic recombination of HIV-1 in vivo

Phylogenetic analysis of feline immunodeficiency virus in feral and companion domestic cats of New Zealand

Predicting demographic group structures based on DNA sequence data

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Coalescent-based estimation of population parameters when the number of demes changes over time

Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays

Reassembling haplotypes in a mixture of pooled amplicons when the relative concentrations are known: A proof-of-concept study on the efficient design of next-generation sequencing strategies.

Recombination in feline immunodeficiency virus from feral and companion domestic cats

Recombination in feline lentiviral genomes during experimental cross-species infection

SQUINT: a multiple alignment program and editor

Science incubators: synthesis centers and their role in the research ecosystem