Lista de obras - Laura L. Elo - Dominio Público Uruguay

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

scientific article published on 01 November 2017

A Data Analysis Protocol for Quantitative Data-Independent Acquisition Proteomics

artículo científico publicado en 2019

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation

artículo científico publicado en 2017

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

artículo científico publicado en 2018

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

artículo científico publicado en 2013

A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments

artículo científico publicado en 2014

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

artículo científico publicado en 2009

A survey of best practices for RNA-seq data analysis

artículo científico publicado en 2016

A systematic evaluation of normalization methods in quantitative label-free proteomics

artículo científico publicado en 2018

Accurate Detection of Differential Expression and Splicing Using Low-Level Features

artículo científico publicado en 2017

Adrenals Contribute to Growth of Castration-Resistant VCaP Prostate Cancer Xenografts

Analysis of time-resolved gene expression measurements across individuals

artículo científico publicado en 2013

Antiandrogens Reduce Intratumoral Androgen Concentrations and Induce Androgen Receptor Expression in Castration-Resistant Prostate Cancer Xenografts

artículo científico publicado en 2017

Assessing the utilization of radiotherapy near end of life at a Finnish University Hospital: a retrospective cohort study.

artículo científico publicado en 2017

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus

artículo científico publicado en 2016

Chronic nonbacterial prostate inflammation in a rat model is associated with changes of gut microbiota that can be modified with a galactoglucomannan-rich hemicellulose extract in the diet

scientific article published on 01 November 2018

Comparison of methods to detect differentially expressed genes between single-cell populations.

artículo científico publicado en 2016

Comparison of software packages for detecting differential expression in RNA-seq studies

artículo científico publicado en 2013

Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs

artículo científico publicado en 2018

Early DNA methylation changes in children developing beta cell autoimmunity at a young age

artículo científico publicado en 2022

Early fecal microbiota composition in children who later develop celiac disease and associated autoimmunity

artículo científico publicado en 2018

Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling

article

Empirical comparison of structure-based pathway methods

artículo científico publicado en 2015

End-of-life chemotherapy use at a Finnish university hospital: a retrospective cohort study.

artículo científico publicado en 2017

Enhanced differential expression statistics for data-independent acquisition proteomics

artículo científico publicado en 2017

Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes

artículo científico publicado en 2017

Erratum to: A survey of best practices for RNA-seq data analysis

artículo científico publicado en 2016

Erratum: Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy

artículo científico publicado en 2017

Genetic variants and their interactions in the prediction of increased pre-clinical carotid atherosclerosis: the cardiovascular risk in young Finns study

artículo científico publicado en 2010

Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming

artículo científico publicado en 2010

HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma

artículo científico

How Reliable are Trial-based Prognostic Models in Real-world Patients with Metastatic Castration-resistant Prostate Cancer?

artículo científico publicado en 2017

Hypoxia-inducible factor (HIF)-prolyl hydroxylase 3 (PHD3) maintains high HIF2A mRNA levels in clear cell renal cell carcinoma

scientific article published on 07 January 2019

Improving identification of differentially expressed genes by integrative analysis of Affymetrix and Illumina arrays.

artículo científico publicado en 2006

Improving missing value estimation in microarray data with gene ontology

artículo científico publicado en 2005

Innate immune activity is detected prior to seroconversion in children with HLA-conferred type 1 diabetes susceptibility

artículo científico publicado en 2014

Integrating probe-level expression changes across generations of Affymetrix arrays

artículo científico publicado en 2005

Intratumoral androgen levels are linked to TMPRSS2-ERG fusion in prostate cancer

scientific article published on 17 May 2018

L1TD1 - a prognostic marker for colon cancer

scientific article published on 23 July 2019

Lack of androgen receptor SUMOylation results in male infertility due to epididymal dysfunction

scientific article published in Nature Communications

Liver lipid metabolism is altered by increased circulating estrogen to androgen ratio in male mouse

artículo científico publicado en 2015

Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy

artículo científico publicado en 2016

Melanoma-associated cancer-testis antigen 16 (CT16) regulates the expression of apoptotic and antiapoptotic genes and promotes cell survival

artículo científico publicado en 2012

Metagenomics analysis of gut microbiota in response to diet intervention and gestational diabetes in overweight and obese women: a randomised, double-blind, placebo-controlled clinical trial

artículo científico publicado en 2020

Missing value imputation improves clustering and interpretation of gene expression microarray data

artículo científico publicado en 2008

Normal stroma suppresses cancer cell proliferation via mechanosensitive regulation of JMJD1a-mediated transcription

artículo científico publicado en 2016

Optimization of Statistical Methods Impact on Quantitative Proteomics Data

artículo científico publicado en 2015

Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets

scientific article published on 23 June 2009

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

artículo científico publicado en 2011

Optimizing detection of transcription factor-binding sites in ChIP-seq experiments

artículo científico publicado en 2013

PASI: A novel pathway method to identify delicate group effects

artículo científico publicado en 2018

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics

artículo científico publicado en 2017

Predicting Skeletal Muscle and Whole-Body Insulin Sensitivity Using NMR-Metabolomic Profiling

artículo científico publicado en 2020

Predicting quantitative genetic interactions by means of sequential matrix approximation

artículo científico publicado en 2008

Prediction of Adult Dyslipidemia Using Genetic and Childhood Clinical Risk Factors: The Cardiovascular Risk in Young Finns Study.

artículo científico publicado en 2017

Prediction of Adulthood Obesity Using Genetic and Childhood Clinical Risk Factors in the Cardiovascular Risk in Young Finns Study

artículo científico publicado en 2017

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

artículo científico publicado en 2016

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

artículo científico publicado en 2011

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies

artículo científico publicado en 2009

Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization

artículo científico publicado en 2018

Quantitative proteomics analysis of the nuclear fraction of human CD4+ cells in the early phases of IL-4-induced Th2 differentiation

artículo científico publicado en 2010

ROTS: An R package for reproducibility-optimized statistical testing

artículo científico publicado en 2017

ROTS: reproducible RNA-seq biomarker detector-prognostic markers for clear cell renal cell cancer

artículo científico publicado en 2015

Reply to Tuomas Mirtti and Tero Aittokallio's Letter to the Editor re: Fatemeh Seyednasrollah, Mehrad Mahmoudian, Liisa Rautakorpi, et al. How Reliable are Trial-based Prognostic Models in Real-world Patients with Metastatic Castration-resistant Pro

artículo científico publicado en 2017

Reproducibility-optimized test statistic for ranking genes in microarray studies

artículo científico publicado en 2008

Resampling reveals sample-level differential expression in clinical genome-wide studies.

artículo científico publicado en 2009

SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation

artículo científico publicado en 2010

Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis.

artículo científico publicado en 2018

SimPhospho: a software tool enabling confident phosphosite assignment.

artículo científico publicado en 2018

Six-Week Endurance Exercise Alters Gut Metagenome That Is not Reflected in Systemic Metabolism in Over-weight Women

artículo científico publicado en 2018

Statistical and machine learning methods to study human CD4+ T cell proteome profiles

artículo científico publicado en 2022

Statistical detection of quantitative protein biomarkers provides insights into signaling networks deregulated in acute myeloid leukemia.

artículo científico publicado en 2014

Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process

artículo científico publicado en 2007

Th1 response and cytotoxicity genes are down-regulated in cutaneous T-cell lymphoma

artículo científico publicado en 2006

The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency

artículo científico publicado en 2015

Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data

artículo científico publicado en 2022

Transcriptional Repressor HIC1 Contributes to Suppressive Function of Human Induced Regulatory T Cells

artículo científico publicado en 2018

Using Peptide-Level Proteomics Data for Detecting Differentially Expressed Proteins

artículo científico publicado en 2015

Weight Loss Trajectories in Healthy Weight Coaching: Cohort Study

artículo científico publicado en 2022

Lista de obras de Laura L. Elo

A DREAM Challenge to Build Prediction Models for Short-Term Discontinuation of Docetaxel in Metastatic Castration-Resistant Prostate Cancer

A Data Analysis Protocol for Quantitative Data-Independent Acquisition Proteomics

A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection

A fully scalable online pre-processing algorithm for short oligonucleotide microarray atlases.

A note on an exon-based strategy to identify differentially expressed genes in RNA-seq experiments

A practical comparison of methods for detecting transcription factor binding sites in ChIP-seq experiments

A survey of best practices for RNA-seq data analysis

A systematic evaluation of normalization methods in quantitative label-free proteomics

Accurate Detection of Differential Expression and Splicing Using Low-Level Features

Adrenals Contribute to Growth of Castration-Resistant VCaP Prostate Cancer Xenografts

Analysis of time-resolved gene expression measurements across individuals

Antiandrogens Reduce Intratumoral Androgen Concentrations and Induce Androgen Receptor Expression in Castration-Resistant Prostate Cancer Xenografts

Assessing the utilization of radiotherapy near end of life at a Finnish University Hospital: a retrospective cohort study.

Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus

Chronic nonbacterial prostate inflammation in a rat model is associated with changes of gut microbiota that can be modified with a galactoglucomannan-rich hemicellulose extract in the diet

Comparison of methods to detect differentially expressed genes between single-cell populations.

Comparison of software packages for detecting differential expression in RNA-seq studies

Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs

Early DNA methylation changes in children developing beta cell autoimmunity at a young age

Early fecal microbiota composition in children who later develop celiac disease and associated autoimmunity

Early suppression of immune response pathways characterizes children with prediabetes in genome-wide gene expression profiling

Empirical comparison of structure-based pathway methods

End-of-life chemotherapy use at a Finnish university hospital: a retrospective cohort study.

Enhanced differential expression statistics for data-independent acquisition proteomics

Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes

Erratum to: A survey of best practices for RNA-seq data analysis

Erratum: Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy

Genetic variants and their interactions in the prediction of increased pre-clinical carotid atherosclerosis: the cardiovascular risk in young Finns study

Genome-wide profiling of interleukin-4 and STAT6 transcription factor regulation of human Th2 cell programming

HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma

How Reliable are Trial-based Prognostic Models in Real-world Patients with Metastatic Castration-resistant Prostate Cancer?

Hypoxia-inducible factor (HIF)-prolyl hydroxylase 3 (PHD3) maintains high HIF2A mRNA levels in clear cell renal cell carcinoma

Improving identification of differentially expressed genes by integrative analysis of Affymetrix and Illumina arrays.

Improving missing value estimation in microarray data with gene ontology

Innate immune activity is detected prior to seroconversion in children with HLA-conferred type 1 diabetes susceptibility

Integrating probe-level expression changes across generations of Affymetrix arrays

Intratumoral androgen levels are linked to TMPRSS2-ERG fusion in prostate cancer

L1TD1 - a prognostic marker for colon cancer

Lack of androgen receptor SUMOylation results in male infertility due to epididymal dysfunction

Liver lipid metabolism is altered by increased circulating estrogen to androgen ratio in male mouse

Longitudinal modeling of ultrasensitive and traditional prostate-specific antigen and prediction of biochemical recurrence after radical prostatectomy

Melanoma-associated cancer-testis antigen 16 (CT16) regulates the expression of apoptotic and antiapoptotic genes and promotes cell survival

Metagenomics analysis of gut microbiota in response to diet intervention and gestational diabetes in overweight and obese women: a randomised, double-blind, placebo-controlled clinical trial

Missing value imputation improves clustering and interpretation of gene expression microarray data

Normal stroma suppresses cancer cell proliferation via mechanosensitive regulation of JMJD1a-mediated transcription

Optimization of Statistical Methods Impact on Quantitative Proteomics Data

Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

Optimizing detection of transcription factor-binding sites in ChIP-seq experiments

PASI: A novel pathway method to identify delicate group effects

Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics

Predicting Skeletal Muscle and Whole-Body Insulin Sensitivity Using NMR-Metabolomic Profiling

Predicting quantitative genetic interactions by means of sequential matrix approximation

Prediction of Adult Dyslipidemia Using Genetic and Childhood Clinical Risk Factors: The Cardiovascular Risk in Young Finns Study.

Prediction of Adulthood Obesity Using Genetic and Childhood Clinical Risk Factors in the Cardiovascular Risk in Young Finns Study

Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open clinical trial data

Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies

Quantitative Proteomics Reveals the Dynamic Protein Landscape during Initiation of Human Th17 Cell Polarization

Quantitative proteomics analysis of the nuclear fraction of human CD4+ cells in the early phases of IL-4-induced Th2 differentiation

ROTS: An R package for reproducibility-optimized statistical testing

ROTS: reproducible RNA-seq biomarker detector-prognostic markers for clear cell renal cell cancer

Reply to Tuomas Mirtti and Tero Aittokallio's Letter to the Editor re: Fatemeh Seyednasrollah, Mehrad Mahmoudian, Liisa Rautakorpi, et al. How Reliable are Trial-based Prognostic Models in Real-world Patients with Metastatic Castration-resistant Pro

Reproducibility-optimized test statistic for ranking genes in microarray studies

Resampling reveals sample-level differential expression in clinical genome-wide studies.

SATB1 dictates expression of multiple genes including IL-5 involved in human T helper cell differentiation

Serum Proteomic Profiling to Identify Biomarkers of Premature Carotid Atherosclerosis.

SimPhospho: a software tool enabling confident phosphosite assignment.

Six-Week Endurance Exercise Alters Gut Metagenome That Is not Reflected in Systemic Metabolism in Over-weight Women

Statistical and machine learning methods to study human CD4+ T cell proteome profiles

Statistical detection of quantitative protein biomarkers provides insights into signaling networks deregulated in acute myeloid leukemia.

Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process

Th1 response and cytotoxicity genes are down-regulated in cutaneous T-cell lymphoma

The L1TD1 protein interactome reveals the importance of post-transcriptional regulation in human pluripotency

Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data

Transcriptional Repressor HIC1 Contributes to Suppressive Function of Human Induced Regulatory T Cells

Using Peptide-Level Proteomics Data for Detecting Differentially Expressed Proteins