Lista de obras - Susanna Manrubia - Dominio Público Uruguay

A trade-off between neutrality and adaptability limits the optimization of viral quasispecies

artículo científico publicado en 2009

Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation

artículo científico publicado en 2017

Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map.

artículo científico publicado en 2018

At the boundary between biological and cultural evolution: the origin of surname distributions

artículo científico publicado en 2002

Biodiversity in model ecosystems, I: coexistence conditions for competing species

artículo científico publicado en 2005

Biodiversity in model ecosystems, II: species assembly and food web structure.

artículo científico publicado en 2005

Collective properties of evolving molecular quasispecies

artículo científico publicado en 2007

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks.

artículo científico publicado en 2011

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks.

artículo científico publicado en 2011

Criticality and scaling in evolutionary ecology

artículo científico publicado en 1999

Demography-based adaptive network model reproduces the spatial organization of human linguistic groups. ⬇️

artículo científico publicado en 2015

Differences in adaptive dynamics determine the success of virus variants that propagate together

artículo científico publicado en 2018

Disentangling the effects of selection and loss bias on gene dynamics

artículo científico publicado en 2017

Distribution of genotype network sizes in sequence-to-structure genotype-phenotype maps ⬇️

artículo científico publicado en 2017

Diversity patterns from ecological models at dynamical equilibrium

artículo científico publicado en 2001

Effects of Spatial Competition on the Diversity of a Quasispecies

artículo científico publicado en 2008

Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies.

artículo científico publicado en 2014

Enumerating secondary structures and structural moieties for circular RNAs ⬇️

artículo científico publicado en 2017

Epistasis between cultural traits causes paradigm shifts in cultural evolution

scientific article published on 19 February 2020

Evolution on neutral networks accelerates the ticking rate of the molecular clock

artículo científico publicado en 2015

Evolutionary Dynamics in the RNA Bacteriophage Qβ Depends on the Pattern of Change in Selective Pressures

scientific article published on 18 June 2019

Evolutionary dynamics of genome segmentation in multipartite viruses.

artículo científico publicado en 2012

Evolutionary dynamics on networks of selectively neutral genotypes: effects of topology and sequence stability

artículo científico publicado en 2009

Evolutionary transition toward defective RNAs that are infectious by complementation.

artículo científico publicado en 2004

Extinction and self-organized criticality in a model of large-scale evolution

artículo científico publicado en 1996

Fat tails and black swans: Exact results for multiplicative processes with resets

artículo científico publicado en 2020

Fitness distributions in exponentially growing asexual populations

artículo científico publicado en 2003

Getting to Know Viral Evolutionary Strategies: Towards the Next Generation of Quasispecies Models

artículo científico

High mutation rates, bottlenecks, and robustness of RNA viral quasispecies

artículo científico publicado en 2005

Influence of mutagenesis and viral load on the sustained low-level replication of an RNA virus

artículo científico publicado en 2011

Internal Disequilibria and Phenotypic Diversification during Replication of Hepatitis C Virus in a Noncoevolving Cellular Environment

artículo científico publicado en 2017

Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes.

artículo científico publicado en 2014

Modeling viral genome fitness evolution associated with serial bottleneck events: evidence of stationary states of fitness

artículo científico publicado en 2002

Modelling viral evolution and adaptation: challenges and rewards.

artículo científico

Modular evolution and increase of functional complexity in replicating RNA molecules

artículo científico publicado en 2006

Motif frequency and evolutionary search times in RNA populations

scientific article published on 21 March 2011

Mutual synchronization and clustering in randomly coupled chaotic dynamical networks

artículo científico publicado en 1999

Neutral networks and chemical function in RNA: Comment on "Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life".

artículo científico publicado en 2012

New patterns in human biogeography revealed by networks of contacts between linguistic groups.

artículo científico publicado en 2015

On the Genealogy of a Population of Biparental Individuals

artículo científico publicado en 2000

On the networked architecture of genotype spaces and its critical effects on molecular evolution

artículo científico publicado en 2018

On the structural repertoire of pools of short, random RNA sequences

artículo científico publicado en 2008

Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo

artículo científico publicado en 2019

Pathways to extinction: beyond the error threshold

artículo científico publicado en 2010

Phenotypic effect of mutations in evolving populations of RNA molecules

artículo científico publicado en 2010

Populations of genetic circuits are unable to find the fittest solution in a multilevel genotype-phenotype map

artículo científico publicado en 2020

Potential benefits of sequential inhibitor-mutagen treatments of RNA virus infections

artículo científico publicado en 2009

Quasispecies dynamics and RNA virus extinction

artículo científico publicado en 2005

Reconstructing evolutionary relationships from functional data: a consistent classification of organisms based on translation inhibition response.

artículo científico publicado en 2004

Reply from R.V. Solé, S.C. Manrubia, M.J. Benton, S. Kauffman and P. Bak

artículo científico publicado en 1999

Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss

artículo científico publicado en 2003

River density and landscape roughness are universal determinants of linguistic diversity

artículo científico publicado en 2014

River density and landscape roughness are universal determinants of linguistic diversity.

artículo científico publicado en 2014

Role of demographic dynamics and conflict in the population-area relationship for human languages

artículo científico publicado en 2012

Self-similarity in rain forests: Evidence for a critical state

article

Self-similarity of extinction statistics in the fossil record

scientific article published in Nature

Severe Hindrance of Viral Infection Propagation in Spatially Extended Hosts ⬇️

artículo científico publicado el 23 de agosto de 2011

Shape of ecological networks

artículo científico publicado en 2001

Spiders: water-driven erosive structures in the southern hemisphere of Mars

artículo científico publicado en 2006

Stochastic multiplicative processes with reset events

artículo científico publicado en 1999

Struggle for Space: Viral Extinction through Competition for Cells

article

Supercritical branching processes and the role of fluctuations under exponential population growth ⬇️

artículo científico publicado el 21 de diciembre de 2003

Suppression of viral infectivity through lethal defection

artículo científico publicado en 2005

Tempo and mode of inhibitor-mutagen antiviral therapies: a multidisciplinary approach

artículo científico publicado en 2011

The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers

artículo científico publicado en 2009

The impact of quasispecies dynamics on the use of therapeutics ⬇️

artículo científico publicado el 16 de septiembre de 2012

The space of genotypes is a network of networks: implications for evolutionary and extinction dynamics

artículo científico publicado en 2017

The turning point and end of an expanding epidemic cannot be precisely forecast

scientific article published on 01 October 2020

The vast unknown microbial biosphere

artículo científico publicado en 2016

Tipping points and early warning signals in the genomic composition of populations induced by environmental changes.

artículo científico publicado en 2015

Topological structure of the space of phenotypes: the case of RNA neutral networks

artículo científico publicado en 2011

Variable mutation rates as an adaptive strategy in replicator populations

artículo científico publicado en 2010

Viral genome segmentation can result from a trade-off between genetic content and particle stability

artículo científico publicado en 2011

What's in a name?: Comment on "Surname distribution in population genetics and in statistical physics".

artículo científico publicado en 2013

toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map. ⬇️

artículo científico publicado en 2014

Lista de obras de Susanna Manrubia

A trade-off between neutrality and adaptability limits the optimization of viral quasispecies

Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation

Adding levels of complexity enhances robustness and evolvability in a multilevel genotype-phenotype map.

At the boundary between biological and cultural evolution: the origin of surname distributions

Biodiversity in model ecosystems, I: coexistence conditions for competing species

Biodiversity in model ecosystems, II: species assembly and food web structure.

Collective properties of evolving molecular quasispecies

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks.

Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks.

Criticality and scaling in evolutionary ecology

Demography-based adaptive network model reproduces the spatial organization of human linguistic groups. ⬇️

Differences in adaptive dynamics determine the success of virus variants that propagate together

Disentangling the effects of selection and loss bias on gene dynamics

Distribution of genotype network sizes in sequence-to-structure genotype-phenotype maps ⬇️

Diversity patterns from ecological models at dynamical equilibrium

Effects of Spatial Competition on the Diversity of a Quasispecies

Efficient HIV-1 inhibition by a 16 nt-long RNA aptamer designed by combining in vitro selection and in silico optimisation strategies.

Enumerating secondary structures and structural moieties for circular RNAs ⬇️

Epistasis between cultural traits causes paradigm shifts in cultural evolution

Evolution on neutral networks accelerates the ticking rate of the molecular clock

Evolutionary Dynamics in the RNA Bacteriophage Qβ Depends on the Pattern of Change in Selective Pressures

Evolutionary dynamics of genome segmentation in multipartite viruses.

Evolutionary dynamics on networks of selectively neutral genotypes: effects of topology and sequence stability

Evolutionary transition toward defective RNAs that are infectious by complementation.

Extinction and self-organized criticality in a model of large-scale evolution

Fat tails and black swans: Exact results for multiplicative processes with resets

Fitness distributions in exponentially growing asexual populations

Getting to Know Viral Evolutionary Strategies: Towards the Next Generation of Quasispecies Models

High mutation rates, bottlenecks, and robustness of RNA viral quasispecies

Influence of mutagenesis and viral load on the sustained low-level replication of an RNA virus

Internal Disequilibria and Phenotypic Diversification during Replication of Hepatitis C Virus in a Noncoevolving Cellular Environment

Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes.

Modeling viral genome fitness evolution associated with serial bottleneck events: evidence of stationary states of fitness

Modelling viral evolution and adaptation: challenges and rewards.

Modular evolution and increase of functional complexity in replicating RNA molecules

Motif frequency and evolutionary search times in RNA populations

Mutual synchronization and clustering in randomly coupled chaotic dynamical networks

Neutral networks and chemical function in RNA: Comment on "Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life".

New patterns in human biogeography revealed by networks of contacts between linguistic groups.

On the Genealogy of a Population of Biparental Individuals

On the networked architecture of genotype spaces and its critical effects on molecular evolution

On the structural repertoire of pools of short, random RNA sequences

Parsimonious Scenario for the Emergence of Viroid-Like Replicons De Novo

Pathways to extinction: beyond the error threshold

Phenotypic effect of mutations in evolving populations of RNA molecules

Populations of genetic circuits are unable to find the fittest solution in a multilevel genotype-phenotype map

Potential benefits of sequential inhibitor-mutagen treatments of RNA virus infections

Quasispecies dynamics and RNA virus extinction

Reconstructing evolutionary relationships from functional data: a consistent classification of organisms based on translation inhibition response.

Reply from R.V. Solé, S.C. Manrubia, M.J. Benton, S. Kauffman and P. Bak

Resistance of virus to extinction on bottleneck passages: study of a decaying and fluctuating pattern of fitness loss

River density and landscape roughness are universal determinants of linguistic diversity

River density and landscape roughness are universal determinants of linguistic diversity.

Role of demographic dynamics and conflict in the population-area relationship for human languages

Self-similarity in rain forests: Evidence for a critical state

Self-similarity of extinction statistics in the fossil record

Severe Hindrance of Viral Infection Propagation in Spatially Extended Hosts ⬇️

Shape of ecological networks

Spiders: water-driven erosive structures in the southern hemisphere of Mars

Stochastic multiplicative processes with reset events

Struggle for Space: Viral Extinction through Competition for Cells

Supercritical branching processes and the role of fluctuations under exponential population growth ⬇️

Suppression of viral infectivity through lethal defection

Tempo and mode of inhibitor-mutagen antiviral therapies: a multidisciplinary approach

The dawn of the RNA World: toward functional complexity through ligation of random RNA oligomers

The impact of quasispecies dynamics on the use of therapeutics ⬇️

The space of genotypes is a network of networks: implications for evolutionary and extinction dynamics

The turning point and end of an expanding epidemic cannot be precisely forecast

The vast unknown microbial biosphere

Tipping points and early warning signals in the genomic composition of populations induced by environmental changes.

Topological structure of the space of phenotypes: the case of RNA neutral networks

Variable mutation rates as an adaptive strategy in replicator populations

Viral genome segmentation can result from a trade-off between genetic content and particle stability

What's in a name?: Comment on "Surname distribution in population genetics and in statistical physics".

toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map. ⬇️