CNApy: a CellNetAnalyzer GUI in Python for analyzing and designing metabolic networks

artículo científico publicado en 2021

COBA 2.0: A Consistency-Based Belief Change System

Designing optimal experiments to discriminate interaction graph models

artículo científico publicado en 2018

Detecting Inconsistencies in Large Biological Networks with Answer Set Programming

Detecting inconsistencies in large biological networks with answer set programming

Engineering an Incremental ASP Solver

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming

artículo científico publicado en 2013

Extended notions of sign consistency to relate experimental data to signaling and regulatory network topologies.

artículo científico publicado en 2015

Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming

article published in 2013

GrinGo: A New Grounder for Answer Set Programming

Learning Boolean logic models of signaling networks with ASP

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

artículo científico publicado en 2017

Metabolic Network Expansion with Answer Set Programming

On the Input Language of ASP Grounder Gringo

Platypus: A Platform for Distributed Answer Set Solving

Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach

artículo científico

Revisiting the Training of Logic Models of Protein Signaling Networks with ASP

The BioASP Library: ASP Solutions for Systems Biology

The genome-scale metabolic network of Ectocarpus siliculosus (EctoGEM): a resource to study brown algal physiology and beyond

artículo científico publicado en 2014