Lista de obras - Andy G. Lynch - Dominio Público Uruguay

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

artículo científico publicado en 2015

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

artículo científico publicado en 2017

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

artículo científico publicado en 2015

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

artículo científico publicado en 2009

A study of the characteristics of single-injection insulated block needles in a biologic model

artículo científico publicado en 2004

Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data

artículo científico publicado en 2017

Assessing agreement between multiple raters with missing rating information, applied to breast cancer tumour grading

artículo científico publicado en 2008

BASH: a tool for managing BeadArray spatial artefacts

artículo científico publicado en 2008

BayesPeak--an R package for analysing ChIP-seq data

artículo científico publicado en 2011

BayesPeak: Bayesian analysis of ChIP-seq data

artículo científico publicado en 2009

BeadArray expression analysis using bioconductor.

artículo científico publicado en 2011

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.

artículo científico publicado en 2007

Calling sample mix-ups in cancer population studies

artículo científico publicado en 2012

Choline Kinase Alpha as an Androgen Receptor Chaperone and Prostate Cancer Therapeutic Target

artículo científico publicado en 2015

Crambled: A Shiny application to enable intuitive resolution of conflicting cellularity estimates

artículo científico publicado en 2015

DESNT: A Poor Prognosis Category of Human Prostate Cancer.

artículo científico publicado en 2017

Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions

scientific article published on 21 January 2019

Different laterality indexes are poorly correlated with one another but consistently show the tendency of males and females to be more left- and right-lateralized, respectively

scientific article published on 15 April 2020

Does the Use of a Handheld Fan Improve Chronic Dyspnea? A Randomized, Controlled, Crossover Trial

artículo científico publicado en 2010

Driver mutations in TP53 are ubiquitous in high grade serous carcinoma of the ovary

artículo científico publicado en 2010

Early radiotherapy dose response and lack of hypersensitivity effect in normal brain tissue: a sequential dynamic susceptibility imaging study of cerebral perfusion.

artículo científico publicado en 2007

Effective gene therapy in an authentic model of Tay-Sachs-related diseases

artículo científico publicado en 2006

Genomic Evolution of Breast Cancer Metastasis and Relapse

artículo científico

HES5 silencing is an early and recurrent change in prostate tumourigenesis

artículo científico publicado en 2015

Hemodynamic steroid responsiveness is predictive of neurological outcome after traumatic brain injury.

artículo científico publicado en 2006

Hidden copy number variation in the HapMap population.

artículo científico publicado en 2008

Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study

artículo científico publicado en 2015

Mining Human Prostate Cancer Datasets: The "camcAPP" Shiny App.

artículo científico publicado en 2017

Missing channels in two-colour microarray experiments: combining single-channel and two-channel data

artículo científico publicado en 2007

Multicenter Validation of the CamGFR Model for Estimated Glomerular Filtration Rate

artículo científico publicado en 2019

Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance.

artículo científico publicado en 2016

New Model for Estimating Glomerular Filtration Rate in Patients With Cancer

artículo científico publicado en 2017

New androgen receptor genomic targets show an interaction with the ETS1 transcription factor.

artículo científico publicado en 2007

Numbers of copy-number variations and false-negative rates will be underestimated if we do not account for the dependence between repeated experiments

artículo científico publicado en 2007

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

artículo científico publicado en 2014

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

artículo científico publicado en 2014

Overnight intensive recovery: elective open aortic surgery without a routine ICU bed.

artículo científico publicado en 2005

Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53

artículo científico publicado en 2015

Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data ⬇️

artículo científico publicado en 2018

Publisher Correction: Whole-genome sequencing of a sporadic primary immunodeficiency cohort

scientific article published on 17 July 2020

Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data

artículo científico publicado en 2014

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

artículo científico publicado en 2021

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets

artículo científico publicado en 2018

Serum albumin level as a predictor of outcome in traumatic brain injury: potential for treatment

artículo científico publicado en 2008

Spike-in validation of an Illumina-specific variance-stabilizing transformation

artículo científico publicado en 2008

Statistical issues in the analysis of Illumina data

artículo científico publicado en 2008

Suprarenal endograft fixation and medium-term renal function: systematic review and meta-analysis.

artículo científico publicado en 2008

Symptom classification in irritable bowel syndrome as a guide to treatment

artículo científico publicado en 2009

Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer

artículo científico

Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data ⬇️

artículo científico publicado en 2018

The Early Effects of Rapid Androgen Deprivation on Human Prostate Cancer

artículo científico publicado en 2015

The androgen receptor fuels prostate cancer by regulating central metabolism and biosynthesis

artículo científico publicado en 2011

The pitfalls of platform comparison: DNA copy number array technologies assessed

artículo científico publicado en 2009

The role of TET-mediated DNA hydroxymethylation in prostate cancer

artículo científico publicado en 2017

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

artículo científico publicado en 2018

Utility of HLAMatchmaker and single-antigen HLA-antibody detection beads for identification of acceptable mismatches in highly sensitized patients awaiting kidney transplantation

artículo científico publicado en 2006

Variation of the distal metatarsal articular angle with axial rotation and inclination of the first metatarsal.

artículo científico publicado en 2006

Whole blood mRNA in prostate cancer reveals a four-gene androgen regulated panel

artículo científico publicado en 2016

Whole-genome sequencing of a sporadic primary immunodeficiency cohort

artículo científico publicado en 2020

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines

artículo científico publicado en 2016

Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma

artículo científico publicado en 2015

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium

artículo científico publicado en 2011

multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples

artículo científico publicado en 2015

Lista de obras de Andy G. Lynch

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

A comparative analysis of whole genome sequencing of esophageal adenocarcinoma pre- and post-chemotherapy

A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing.

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data

A study of the characteristics of single-injection insulated block needles in a biologic model

Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data

Assessing agreement between multiple raters with missing rating information, applied to breast cancer tumour grading

BASH: a tool for managing BeadArray spatial artefacts

BayesPeak--an R package for analysing ChIP-seq data

BayesPeak: Bayesian analysis of ChIP-seq data

BeadArray expression analysis using bioconductor.

Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization.

Calling sample mix-ups in cancer population studies

Choline Kinase Alpha as an Androgen Receptor Chaperone and Prostate Cancer Therapeutic Target

Crambled: A Shiny application to enable intuitive resolution of conflicting cellularity estimates

DESNT: A Poor Prognosis Category of Human Prostate Cancer.

Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions

Different laterality indexes are poorly correlated with one another but consistently show the tendency of males and females to be more left- and right-lateralized, respectively

Does the Use of a Handheld Fan Improve Chronic Dyspnea? A Randomized, Controlled, Crossover Trial

Driver mutations in TP53 are ubiquitous in high grade serous carcinoma of the ovary

Early radiotherapy dose response and lack of hypersensitivity effect in normal brain tissue: a sequential dynamic susceptibility imaging study of cerebral perfusion.

Effective gene therapy in an authentic model of Tay-Sachs-related diseases

Genomic Evolution of Breast Cancer Metastasis and Relapse

HES5 silencing is an early and recurrent change in prostate tumourigenesis

Hemodynamic steroid responsiveness is predictive of neurological outcome after traumatic brain injury.

Hidden copy number variation in the HapMap population.

Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study

Mining Human Prostate Cancer Datasets: The "camcAPP" Shiny App.

Missing channels in two-colour microarray experiments: combining single-channel and two-channel data

Multicenter Validation of the CamGFR Model for Estimated Glomerular Filtration Rate

Mutational signatures in esophageal adenocarcinoma define etiologically distinct subgroups with therapeutic relevance.

New Model for Estimating Glomerular Filtration Rate in Patients With Cancer

New androgen receptor genomic targets show an interaction with the ETS1 transcription factor.

Numbers of copy-number variations and false-negative rates will be underestimated if we do not account for the dependence between repeated experiments

Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis.

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

Overnight intensive recovery: elective open aortic surgery without a routine ICU bed.

Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53

Publisher Correction: Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data ⬇️

Publisher Correction: Whole-genome sequencing of a sporadic primary immunodeficiency cohort

Quantifying the impact of inter-site heterogeneity on the distribution of ChIP-seq data

Resolving the immune landscape of human prostate at a single-cell level in health and cancer

Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets

Serum albumin level as a predictor of outcome in traumatic brain injury: potential for treatment

Spike-in validation of an Illumina-specific variance-stabilizing transformation

Statistical issues in the analysis of Illumina data

Suprarenal endograft fixation and medium-term renal function: systematic review and meta-analysis.

Symptom classification in irritable bowel syndrome as a guide to treatment

Synthetic lethality between androgen receptor signalling and the PARP pathway in prostate cancer

Telomerecat: A ploidy-agnostic method for estimating telomere length from whole genome sequencing data ⬇️

The Early Effects of Rapid Androgen Deprivation on Human Prostate Cancer

The androgen receptor fuels prostate cancer by regulating central metabolism and biosynthesis

The pitfalls of platform comparison: DNA copy number array technologies assessed

The role of TET-mediated DNA hydroxymethylation in prostate cancer

Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal

Utility of HLAMatchmaker and single-antigen HLA-antibody detection beads for identification of acceptable mismatches in highly sensitized patients awaiting kidney transplantation

Variation of the distal metatarsal articular angle with axial rotation and inclination of the first metatarsal.

Whole blood mRNA in prostate cancer reveals a four-gene androgen regulated panel

Whole-genome sequencing of a sporadic primary immunodeficiency cohort

Whole-genome sequencing of nine esophageal adenocarcinoma cell lines

Whole-genome sequencing provides new insights into the clonal architecture of Barrett's esophagus and esophageal adenocarcinoma

ZNF703 is a common Luminal B breast cancer oncogene that differentially regulates luminal and basal progenitors in human mammary epithelium

multiSNV: a probabilistic approach for improving detection of somatic point mutations from multiple related tumour samples