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Lista de obras de Jacques Fellay

A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals

scientific article published on 13 September 2019

A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control

artículo científico publicado en 2013

A genome-wide association study of resistance to HIV infection in highly exposed uninfected individuals with hemophilia A.

artículo científico publicado en 2013

A genome-wide polygenic approach to HIV uncovers link to inflammatory bowel disease and identifies potential novel genetic variants

article

A novel Acute Retroviral Syndrome Severity Score predicts the key surrogate markers for HIV-1 disease progression

artículo científico publicado en 2014

A polymorphism in the HCP5 gene associated with HLA-B*5701 does not restrict HIV-1 in vitro

artículo científico publicado en 2010

A polymorphism in the leptin gene promoter is associated with anemia in patients with HIV disease

artículo científico publicado en 2011

A privacy-preserving solution for compressed storage and selective retrieval of genomic data

artículo científico publicado en 2016

A39 Human exome sequencing to evaluate the impact of rare coding variation on HIV-1 control

artículo científico publicado en 2017

Adaptation of hepatitis C virus to interferon lambda polymorphism across multiple viral genotypes

artículo científico publicado en 2019

Adaptation on a genomic scale.

artículo científico publicado en 2015

Adverse events to antiretrovirals in the Swiss HIV Cohort Study: effect on mortality and treatment modification

article

Amino Acid Variation in HLA Class II Proteins Is a Major Determinant of Humoral Response to Common Viruses

artículo científico publicado en 2015

Analysis of stop-gain and frameshift variants in human innate immunity genes

artículo científico publicado en 2014

Analysis of stop-gain and frameshift variants in human innate immunity genes

article

Are Privacy-Enhancing Technologies for Genomic Data Ready for the Clinic? A Survey of Medical Experts of the Swiss HIV Cohort Study.

artículo científico publicado en 2018

Association study of common genetic variants and HIV-1 acquisition in 6,300 infected cases and 7,200 controls

artículo científico publicado en 2013

Author Correction: Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption

artículo científico publicado en 2021

Blacklisting variants common in private cohorts but not in public databases optimizes human exome analysis

artículo científico publicado en 2018

CCL3L1 and HIV/AIDS susceptibility

artículo científico publicado en 2009

COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation

scientific article published on 19 March 2020

CYP3A activity measured by the midazolam test is not related to 3435 C >T polymorphism in the multiple drug resistance transporter gene

artículo científico publicado en 2004

Co-trimoxazole prophylaxis is associated with reduced risk of incident tuberculosis in participants in the Swiss HIV Cohort Study

artículo científico publicado en 2014

Common genetic variation and the control of HIV-1 in humans

artículo científico publicado en 2009

Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population

artículo científico publicado en 2011

Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque

artículo científico publicado en 2011

Contribution of Genetic Background and Clinical Risk Factors to Low-Trauma Fractures in Human Immunodeficiency Virus (HIV)-Positive Persons: The Swiss HIV Cohort Study.

artículo científico publicado en 2016

Contribution of Genetic Background and Data Collection on Adverse Events of Anti-human Immunodeficiency Virus (HIV) Drugs (D:A:D) Clinical Risk Score to Chronic Kidney Disease in Swiss HIV-infected Persons With Normal Baseline Estimated Glomerular F

scientific article published on 01 February 2020

Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons

artículo científico publicado en 2013

Copy number variation of KIR genes influences HIV-1 control

artículo científico publicado en 2011

Correcting for Population Stratification Reduces False Positive and False Negative Results in Joint Analyses of Host and Pathogen Genomes

scholarly article by Olivier Naret et al published 2018 in Frontiers in Genetics

Correcting for population stratification reduces false positive and false negative results in joint analyses of host and pathogen genomes

Counteraction of HLA-C-mediated immune control of HIV-1 by Nef.

artículo científico publicado en 2010

Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children.

artículo científico publicado en 2018

Determinants of HIV-1 broadly neutralizing antibody induction.

artículo científico publicado en 2016

Determinants of HIV-1 reservoir size and long-term dynamics during suppressive ART

scientific article published on 19 July 2019

Differential Immunodominance Hierarchy of CD8+ T-Cell Responses in HLA-B*27:05- and -B*27:02-Mediated Control of HIV-1 Infection

artículo científico publicado en 2017

Disentangling human tolerance and resistance against HIV.

artículo científico publicado en 2014

Distinctive roles of age, sex, and genetics in shaping transcriptional variation of human immune responses to microbial challenges

artículo científico publicado en 2017

Dynamics of HIV latency and reactivation in a primary CD4+ T cell model

artículo científico publicado en 2014

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver.

artículo científico publicado en 2018

Effect of Fc Receptor Genetic Diversity on HIV-1 Disease Pathogenesis

article

Elevated HLA-A expression impairs HIV control through inhibition of NKG2A-expressing cells

artículo científico publicado en 2018

Estimating the Respective Contributions of Human and Viral Genetic Variation to HIV Control

artículo científico publicado en 2017

Estimating the net contribution of interleukin-28B variation to spontaneous hepatitis C virus clearance

artículo científico publicado en 2011

Estimating the respective contributions of human and viral genetic variation to HIV control

article

European genetic diversity and susceptibility to pathogens

artículo científico

Evaluating the impact of functional genetic variation on HIV-1 control

artículo científico publicado en 2017

Evidence of dysregulation of dendritic cells in primary HIV infection

artículo científico publicado en 2010

Exome Sequencing Reveals Primary Immunodeficiencies in Children with Community-Acquired Pseudomonas aeruginosa Sepsis

artículo científico publicado en 2016

Exploring the interactions between the human and viral genomes

artículo científico publicado en 2019

Familial segregation of group B streptococcal infection in a consanguineous kindred

artículo científico publicado en 2016

Gender medicine and oncology: report and consensus of an ESMO workshop

scientific article published on 01 December 2019

Genetic Associations with Resistance to HIV-1 Infection, Viral Control and Protection Against Disease

article

Genetic interplay between HLA-C and MIR148A in HIV control and Crohn disease

artículo científico publicado en 2013

Genetic variation in IL28B predicts hepatitis C treatment-induced viral clearance

artículo científico publicado en 2009

Genetics of human susceptibility to active and latent tuberculosis: present knowledge and future perspectives

artículo científico publicado en 2017

GenoGuard: Protecting Genomic Data against Brute-Force Attacks

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

artículo científico publicado en 2017

Genome-wide association study identifies single nucleotide polymorphism in DYRK1A associated with replication of HIV-1 in monocyte-derived macrophages

artículo científico publicado en 2011

Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients

artículo científico publicado en 2011

Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals

artículo científico publicado en 2010

Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure

artículo científico publicado en 2011

GuavaH: a compendium of host genomic data in HIV biology and disease

artículo científico publicado en 2014

HIV Peptidome-Wide Association Study Reveals Patient-Specific Epitope Repertoires Associated with HIV Control

article

HIV Transmission Chains Exhibit Greater HLA-B Homogeneity Than Randomly Expected

artículo científico publicado en 2019

HIV and solid organ transplantation: the Swiss experience

article

HIV lipoatrophy and mosquito bites

artículo científico publicado en 2002

HIV peptidome-wide association study reveals patient-specific epitope repertoires associated with HIV control

artículo científico publicado en 2019

HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses

article

HLA class I and KIR genes do not protect against HIV type 1 infection in highly exposed uninfected individuals with hemophilia A.

artículo científico publicado en 2014

HLA tapasin independence: broader peptide repertoire and HIV control

artículo científico publicado en 2020

HLA-B*14:02-Restricted Env-Specific CD8+ T-Cell Activity Has Highly Potent Antiviral Efficacy Associated with Immune Control of HIV Infection

artículo científico publicado en 2017

HLA-Bw4 identifies a population of HIV-infected patients with an increased capacity to control viral replication after structured treatment interruption

artículo científico publicado en 2012

HLA-C cell surface expression and control of HIV/AIDS correlate with a variant upstream of HLA-C.

artículo científico publicado en 2009

Hepatitis C trials that combine investigational agents with pegylated interferon should be stratified by interleukin-28B genotype

artículo científico publicado en 2010

Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART

scientific article published on 02 November 2020

Heterozygous gene truncation delineates the human haploinsufficient genome

article

Host Genetics and Genomics

article

Host determinants of HIV-1 control in African Americans

artículo científico publicado en 2010

Host genetic determinants of T cell responses to the MRKAd5 HIV-1 gag/pol/nef vaccine in the step trial

artículo científico publicado en 2011

Host genetics and HIV-1: the final phase?

artículo científico publicado en 2010

Host genetics influences on HIV type-1 disease

artículo científico publicado en 2009

Host genetics of HCV disease — IL28B

article

Host genetics: fine-tuning innate signaling

artículo científico publicado en 2007

How the Human Genome Can Predict Response to Hepatitis C Therapy

article

Human genetic variants and age are the strongest predictors of humoral immune responses to common pathogens and vaccines

article

Human genetic variation in HIV disease: beyond genome-wide association studies

artículo científico publicado en 2015

Human genomics of acute liver failure due to hepatitis B virus infection: an exome sequencing study in liver transplant recipients

artículo científico publicado en 2018

IFNL3/4 polymorphisms are associated with AIDS-related Kaposiʼs sarcoma

scholarly article by Stéphanie Bibert et al published September 2018 in AIDS

IL28B genotype is associated with differential expression of intrahepatic interferon-stimulated genes in patients with chronic hepatitis C.

artículo científico publicado en 2010

ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C.

artículo científico publicado en 2010

Identification of Siglec-1 null individuals infected with HIV-1.

scientific article published on 11 August 2016

Impact of phenotype definition on genome-wide association signals: empirical evaluation in human immunodeficiency virus type 1 infection

artículo científico publicado en 2011

Increased CHIP Prevalence Amongst People Living with HIV

artículo científico publicado en 2020

Influence of HLA-C expression level on HIV control

artículo científico publicado en 2013

Inosine triphosphate protects against ribavirin-induced adenosine triphosphate loss by adenylosuccinate synthase function

artículo científico publicado en 2011

Interleukin 28B polymorphisms are the only common genetic variants associated with low-density lipoprotein cholesterol (LDL-C) in genotype-1 chronic hepatitis C and determine the association between LDL-C and treatment response.

artículo científico publicado en 2012

Interleukin-28B polymorphism improves viral kinetics and is the strongest pretreatment predictor of sustained virologic response in genotype 1 hepatitis C virus

artículo científico publicado en 2010

Joint analysis of host and pathogen genomes

Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1.

artículo científico publicado en 2018

LILRB2 interaction with HLA class I correlates with control of HIV-1 infection

artículo científico publicado en 2014

Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints.

artículo científico publicado en 2011

Médecine génomique et Maladies infectieuses

Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors

artículo científico publicado en 2018

Neonatal Group B Streptococcal Disease in Otherwise Healthy Infants: Failure of Specific Neonatal Immune Responses

artículo científico publicado en 2017

No Evidence for Association of β-Defensin Genomic Copy Number with HIV Susceptibility, HIV Load during Clinical Latency, or Progression to AIDS.

artículo científico publicado en 2017

P08-06 LB. A genome-wide association study of host genetic determinants of T cell responses to the MRKAd5 HIV-1 gag/pol/nef vaccine in the STEP trial.

artículo científico publicado en 2009

Personalized hepatitis C therapy: opportunities and pitfalls

artículo científico publicado el 1 de marzo de 2011

Pharmacogenomics of HIV therapy: summary of a workshop sponsored by the National Institute of Allergy and Infectious Diseases

artículo científico publicado en 2011

Polymorphisms of large effect explain the majority of the host genetic contribution to variation of HIV-1 virus load

artículo científico publicado en 2015

Population pharmacokinetics and effects of efavirenz in patients with human immunodeficiency virus infection

artículo científico publicado en 2003

Predicting the Occurrence of Variants in RAG1 and RAG2

scientific article published on 06 August 2019

Prevalence of adverse events associated with potent antiretroviral treatment: Swiss HIV Cohort Study

artículo científico publicado en 2001

Privacy in the Genomic Era

artículo científico publicado en 2015

Privacy-preserving genomic testing in the clinic: a model using HIV treatment.

artículo científico publicado en 2016

Publisher Correction: Natural variation in the parameters of innate immune cells is preferentially driven by genetic factors

scientific article published on 01 June 2018

Quantifying Genomic Privacy via Inference Attack with High-Order SNV Correlations

Response to antiretroviral treatment in HIV-1-infected individuals with allelic variants of the multidrug resistance transporter 1: a pharmacogenetics study

artículo científico publicado en 2002

Revolutionizing Medical Data Sharing Using Advanced Privacy-Enhancing Technologies: Technical, Legal, and Ethical Synthesis

artículo científico publicado en 2021

Role of APOBEC3F Gene Variation in HIV-1 Disease Progression and Pneumocystis Pneumonia

artículo científico publicado en 2016

Role of human leukocyte antigen class I alleles in progressive multifocal leukoencephalopathy

artículo científico publicado en 2010

Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo

artículo científico publicado en 2012

SQC: secure quality control for meta-analysis of genome-wide association studies

artículo científico publicado en 2017

Severe viral respiratory infections in children with IFIH1 loss-of-function mutations.

artículo científico publicado en 2017

Susceptibility to infection in early life: a growing role for human genetics

artículo científico publicado en 2020

The Characteristics of Heterozygous Protein Truncating Variants in the Human Genome

artículo científico publicado en 2015

The Duffy antigen receptor for chemokines null promoter variant does not influence HIV-1 acquisition or disease progression

artículo científico publicado en 2009

The HCP5 single-nucleotide polymorphism: a simple screening tool for prediction of hypersensitivity reaction to abacavir

artículo científico publicado en 2008

The Interplay Between Host Genetic Variation, Viral Replication, and Microbial Translocation in Untreated HIV-Infected Individuals

artículo científico publicado en 2015

The association of genetic variants with hepatic steatosis in patients with genotype 1 chronic hepatitis C infection

artículo científico publicado en 2012

The characterization of twenty sequenced human genomes

artículo científico publicado en 2010

The risk of COVID-19 death is much greater and age dependent with type I IFN autoantibodies

artículo científico publicado en 2022

Treatment of Cytomegalovirus Infection or Disease in Solid Organ Transplant Recipients with Valganciclovir

Truly privacy-preserving federated analytics for precision medicine with multiparty homomorphic encryption

artículo científico publicado en 2021

Variants in the ITPA gene protect against ribavirin-induced hemolytic anemia and decrease the need for ribavirin dose reduction

artículo científico publicado en 2010

Variations of CYP3A activity induced by antiretroviral treatment in HIV-1 infected patients

artículo científico publicado en 2005

Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial

artículo científico publicado en 2019

Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in Europe

artículo científico publicado en 2017

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure

artículo científico publicado en 2021

Virosaurus A Reference to Explore and Capture Virus Genetic Diversity

artículo científico publicado en 2020

Visual masking deficits in schizophrenia: a view into the genetics of the disease through an endophenotype

scientific article published in 2022

WGAViewer: software for genomic annotation of whole genome association studies

artículo científico publicado en 2008

Whole-exome sequencing for the identification of rare variants in primary immunodeficiency genes in children with sepsis - a prospective population-based cohort study

artículo científico publicado en 2020

X chromosomal variation is associated with slow progression to AIDS in HIV-1-infected women

artículo científico publicado en 2009

Young and Early Career Investigators: Report from a Global HIV Vaccine Enterprise Working Group

article

[HIV-AIDS: answers to new questions]

artículo científico publicado en 2006