Lista de obras - Levi Waldron - Dominio Público Uruguay

A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence

artículo científico publicado en 2011

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

artículo científico publicado en 2013

A reproducible approach to high-throughput biological data acquisition and integration

artículo científico publicado en 2015

Abstract 2353: A comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer

article

Abstract 3161: Identification of HPV/p16-associated microRNAs in primary oropharyngeal carcinoma

Abstract 5073: Proteomic profiling of head and neck squamous cell carcinoma cell lines

Accessible, curated metagenomic data through ExperimentHub.

artículo científico publicado en 2017

Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum

artículo científico publicado en 2012

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

artículo científico publicado en 2015

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

scientific article published on 01 December 2019

Bayesian nonparametric cross-study validation of prediction methods ⬇️

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes

scientific article published on 01 February 2020

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

artículo científico publicado en 2016

Collisional broadening and shifting of Raman lines, and the potential energy surface for H2–Ar

article

Comparing Platforms for Messenger RNA Expression Profiling of Archival Formalin-Fixed, Paraffin-Embedded Tissues

artículo científico publicado en 2015

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

artículo científico publicado en 2012

Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas

artículo científico publicado en 2010

Creation of a Human Secretome: A Novel Composite Library of Human Secreted Proteins: Validation Using Ovarian Cancer Gene Expression Data and a Virtual Secretome Array

artículo científico publicado en 2015

Cross-study validation for the assessment of prediction algorithms

artículo científico publicado en 2014

Data and Statistical Methods To Analyze the Human Microbiome.

artículo científico publicado en 2018

Engagement of introductory biostatistics students in a novel hybrid course format

scholarly article by Marcel Ramos et al published 2 November 2016 in F1000Research

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota

scientific article published in Scientific Reports

Expression profiling of archival tumors for long-term health studies

artículo científico publicado en 2012

Genotype and time of day shape the Populus drought response

artículo científico publicado en 2009

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

artículo científico publicado en 2019

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

Integrative approaches for microarray data analysis

artículo científico publicado en 2012

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells

artículo científico publicado en 2014

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

artículo científico publicado en 2016

Meta-Analysis in Gene Expression Studies

artículo científico publicado en 2016

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

artículo científico publicado en 2019

MetaGxData: Breast and Ovarian Clinically Annotated Transcriptomics Datasets

MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature.

artículo científico publicado en 2019

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

artículo científico publicado en 2019

Metagenomic biomarker discovery and explanation

artículo científico publicado en 2011

Metagenomic microbial community profiling using unique clade-specific marker genes

artículo científico publicado en 2012

MicroRNA-301 mediates proliferation and invasion in human breast cancer.

artículo científico publicado en 2011

Microbial community function and biomarker discovery in the human microbiome

artículo científico publicado en 2011

Microbial community function and biomarker discovery in the human microbiome

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Mo1306 Rapid and Accurate Inference of Gene Expression in Difficult-to-Isolate Cell Types

article

Modeling of simultaneous three-dimensional leaching and chemical reaction of CCA components in unfixed wood exposed to water

Modeling of simultaneous unidirectional leaching and reduction of Cr6+ in unfixed CCA treated wood

article published in 2007

Modeling the Leaching of Inorganic Components of Wood Preservatives in Service

Molecular Subtypes of High-Grade Serous Ovarian Cancer: The Holy Grail?

Multiomic Integration of Public Oncology Databases in Bioconductor

scientific article published on 01 October 2020

Multivariable association discovery in population-scale meta-omics studies

artículo científico publicado en 2021

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis

artículo científico publicado en 2014

Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples

artículo científico publicado en 2010

Optimized application of penalized regression methods to diverse genomic data

artículo científico publicado en 2011

Orchestrating a community-developed computational workshop and accompanying training materials

artículo científico publicado en 2018

Orchestrating high-throughput genomic analysis with Bioconductor

artículo científico publicado en 2015

Orchestrating single-cell analysis with Bioconductor

artículo científico publicado en 2019

Patterns of SARS-CoV-2 testing preferences in a national cohort in the United States

artículo científico publicado en 2020

Potentially prognostic miRNAs in HPV-associated oropharyngeal carcinoma

artículo científico publicado en 2013

Prediction of long-term leaching potential of preservative-treated wood by diffusion modeling

article published in 2005

Public data and open source tools for multi-assay genomic investigation of disease

artículo científico publicado en 2016

Publisher Correction: Orchestrating single-cell analysis with Bioconductor

artículo científico publicado en 2020

Racial/Ethnic Disparities in Genomic Sequencing

artículo científico publicado en 2016

Relating the metatranscriptome and metagenome of the human gut.

artículo científico publicado en 2014

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

artículo científico publicado en 2012

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

artículo científico publicado en 2014

SIMON: Open-Source Knowledge Discovery Platform

artículo científico publicado en 2021

Shear Wave Elastography of the Spleen for Monitoring Transjugular Intrahepatic Portosystemic Shunt Function

Sociodemographic variation in the oral microbiome

scientific article published on 08 May 2019

Stem cell gene expression programs influence clinical outcome in human leukemia.

artículo científico publicado en 2011

Sustainable urban community development from the grassroots: Challenges and opportunities in a pedestrian street initiative

article

Testing, Testing: What SARS-CoV-2 testing services do adults in the United States actually want?

artículo científico publicado en 2020

The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles

artículo científico publicado en 2016

The impact of stroma on the discovery of molecular subtypes and prognostic gene signatures in serous ovarian cancer:

article

The murine caecal microRNA signature depends on the presence of the endogenous microbiota

artículo científico publicado en 2011

The relationship between anxiety, health, and potential stressors among adults in the United States during the COVID-19 pandemic

artículo científico publicado en 2020

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

artículo científico publicado en 2019

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Two-stage microbial community experimental design

scientific article published on 15 August 2013

Using Registry Data to Construct a Comparison Group for Programmatic Effectiveness Evaluation - the New York City HIV Care Coordination Program.

artículo científico publicado en 2018

Waldron et al. Reply to “Commentary on the HMP16SData Bioconductor Package”

artículo científico publicado en 2019

Widespread modulation of gene expression by copy number variation in skeletal muscle

artículo científico publicado en 2018

bioBakery: A meta'omic analysis environment

artículo científico publicado en 2018

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome

artículo científico publicado en 2013

mRNA transcript quantification in archival samples using multiplexed, color-coded probes ⬇️

artículo científico publicado en 2011

Lista de obras de Levi Waldron

A gene signature in histologically normal surgical margins is predictive of oral carcinoma recurrence

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets

A reproducible approach to high-throughput biological data acquisition and integration

Abstract 2353: A comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer

Abstract 3161: Identification of HPV/p16-associated microRNAs in primary oropharyngeal carcinoma

Abstract 5073: Proteomic profiling of head and neck squamous cell carcinoma cell lines

Accessible, curated metagenomic data through ExperimentHub.

Assessment of colorectal cancer molecular features along bowel subsites challenges the conception of distinct dichotomy of proximal versus distal colorectum

Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

Author Correction: Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Bayesian nonparametric cross-study validation of prediction methods ⬇️

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes

CellMapper: rapid and accurate inference of gene expression in difficult-to-isolate cell types

Collisional broadening and shifting of Raman lines, and the potential energy surface for H2–Ar

Comparing Platforms for Messenger RNA Expression Profiling of Archival Formalin-Fixed, Paraffin-Embedded Tissues

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

Comprehensive MicroRNA profiling for head and neck squamous cell carcinomas

Creation of a Human Secretome: A Novel Composite Library of Human Secreted Proteins: Validation Using Ovarian Cancer Gene Expression Data and a Virtual Secretome Array

Cross-study validation for the assessment of prediction algorithms

Data and Statistical Methods To Analyze the Human Microbiome.

Engagement of introductory biostatistics students in a novel hybrid course format

Evaluation of Oral Cavity DNA Extraction Methods on Bacterial and Fungal Microbiota

Expression profiling of archival tumors for long-term health studies

Genotype and time of day shape the Populus drought response

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor

HMP16SData: Efficient Access to the Human Microbiome Project through Bioconductor

Integrative approaches for microarray data analysis

Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

Meta-Analysis in Gene Expression Studies

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

MetaGxData: Breast and Ovarian Clinically Annotated Transcriptomics Datasets

MetaGxData: Clinically Annotated Breast, Ovarian and Pancreatic Cancer Datasets and their Use in Generating a Multi-Cancer Gene Signature.

Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation

Metagenomic biomarker discovery and explanation

Metagenomic microbial community profiling using unique clade-specific marker genes

MicroRNA-301 mediates proliferation and invasion in human breast cancer.

Microbial community function and biomarker discovery in the human microbiome

Microbial community function and biomarker discovery in the human microbiome

Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals

Mo1306 Rapid and Accurate Inference of Gene Expression in Difficult-to-Isolate Cell Types

Modeling of simultaneous three-dimensional leaching and chemical reaction of CCA components in unfixed wood exposed to water

Modeling of simultaneous unidirectional leaching and reduction of Cr6+ in unfixed CCA treated wood

Modeling the Leaching of Inorganic Components of Wood Preservatives in Service

Molecular Subtypes of High-Grade Serous Ovarian Cancer: The Holy Grail?

Multiomic Integration of Public Oncology Databases in Bioconductor

Multivariable association discovery in population-scale meta-omics studies

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis

Optimization and analysis of a quantitative real-time PCR-based technique to determine microRNA expression in formalin-fixed paraffin-embedded samples

Optimized application of penalized regression methods to diverse genomic data

Orchestrating a community-developed computational workshop and accompanying training materials

Orchestrating high-throughput genomic analysis with Bioconductor

Orchestrating single-cell analysis with Bioconductor

Patterns of SARS-CoV-2 testing preferences in a national cohort in the United States

Potentially prognostic miRNAs in HPV-associated oropharyngeal carcinoma

Prediction of long-term leaching potential of preservative-treated wood by diffusion modeling

Public data and open source tools for multi-assay genomic investigation of disease

Publisher Correction: Orchestrating single-cell analysis with Bioconductor

Racial/Ethnic Disparities in Genomic Sequencing

Relating the metatranscriptome and metagenome of the human gut.

Report on emerging technologies for translational bioinformatics: a symposium on gene expression profiling for archival tissues

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

SIMON: Open-Source Knowledge Discovery Platform

Shear Wave Elastography of the Spleen for Monitoring Transjugular Intrahepatic Portosystemic Shunt Function

Sociodemographic variation in the oral microbiome

Sociodemographic variation in the oral microbiome

Stem cell gene expression programs influence clinical outcome in human leukemia.

Sustainable urban community development from the grassroots: Challenges and opportunities in a pedestrian street initiative

Testing, Testing: What SARS-CoV-2 testing services do adults in the United States actually want?

The Doppelgänger Effect: Hidden Duplicates in Databases of Transcriptome Profiles

The impact of stroma on the discovery of molecular subtypes and prognostic gene signatures in serous ovarian cancer:

The murine caecal microRNA signature depends on the presence of the endogenous microbiota

The relationship between anxiety, health, and potential stressors among adults in the United States during the COVID-19 pandemic

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study

Two-stage microbial community experimental design

Using Registry Data to Construct a Comparison Group for Programmatic Effectiveness Evaluation - the New York City HIV Care Coordination Program.

Waldron et al. Reply to “Commentary on the HMP16SData Bioconductor Package”

Widespread modulation of gene expression by copy number variation in skeletal muscle