Lista de obras - Mikhail Shugay - Dominio Público Uruguay

A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies

artículo científico publicado en 2019

A high-throughput assay for quantitative measurement of PCR errors

artículo científico publicado en 2017

A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance

artículo científico publicado en 2015

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling

artículo científico

An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity

artículo científico publicado en 2019

Antigen receptor repertoire profiling from RNA-seq data.

artículo científico publicado en 2017

Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries

artículo científico publicado en 2017

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences

scientific article published on 01 March 2020

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases

artículo científico publicado en 2020

CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features

scientific article published on 01 July 2020

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

artículo científico publicado en 2018

Comparative Analysis of B-Cell Receptor Repertoires Induced by Live Yellow Fever Vaccine in Young and Middle-Age Donors

scientific article published on 09 October 2018

Comparative analysis of murine T-cell receptor repertoires.

artículo científico publicado en 2017

Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex

artículo científico publicado en 2020

Detecting T cell receptors involved in immune responses from single repertoire snapshots

artículo científico publicado en 2019

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

artículo científico publicado en 2014

Diversity in immunogenomics: the value and the challenge

artículo científico publicado en 2021

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians

artículo científico

Exploring the pre-immune landscape of antigen-specific T cells

artículo científico publicado en 2018

Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer

artículo científico publicado en 2012

High-quality full-length immunoglobulin profiling with unique molecular barcoding.

artículo científico publicado en 2016

High-resolution repertoire analysis reveals a major bystander activation of Tfh and Tfr cells

article published in the Proceedings of the National Academy of Sciences of the United States of America

Huge Overlap of Individual TCR Beta Repertoires.

artículo científico publicado en 2013

LIF, a Novel STAT5-Regulated Gene, Is Aberrantly Expressed in Myeloproliferative Neoplasms

artículo científico publicado en 2011

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

artículo científico publicado en 2017

MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4+ T cells

artículo científico publicado en 2020

MiTCR: software for T-cell receptor sequencing data analysis.

artículo científico publicado en 2013

MiXCR: software for comprehensive adaptive immunity profiling.

artículo científico publicado en 2015

Mother and child T cell receptor repertoires: deep profiling study.

artículo científico publicado en 2013

Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions

artículo científico publicado en 2013

P2RX7 purinoceptor: a therapeutic target for ameliorating the symptoms of duchenne muscular dystrophy

artículo científico publicado en 2015

Pairing of T-cell receptor chains via emulsion PCR.

artículo científico publicado en 2013

Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers.

artículo científico

SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors

artículo científico publicado en 2020

SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T-cell receptors

artículo científico publicado en 2020

Sequencing rare T-cell populations

artículo científico publicado en 2015

Single-cell analysis of glandular T cell receptors in Sjögren's syndrome.

artículo científico publicado en 2016

T-cell tracking, safety, and effect of low-dose donor memory T-cell infusions after αβ T cell-depleted hematopoietic stem cell transplantation

scientific article published on 17 November 2020

TCR usage, gene expression and function of two distinct FOXP3(+)Treg subsets within CD4(+)CD25(hi) T cells identified by expression of CD39 and CD45RO.

artículo científico publicado en 2015

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging

scientific article published on 24 July 2018

The Interplay between CD27dull and CD27bright B Cells Ensures the Flexibility, Stability, and Resilience of Human B Cell Memory

scientific article published on 01 March 2020

The evidence for increased L1 activity in the site of human adult brain neurogenesis.

artículo científico publicado en 2015

Towards error-free profiling of immune repertoires.

artículo científico

Tracking T-cell immune reconstitution after TCRαβ/CD19-depleted hematopoietic cells transplantation in children.

artículo científico publicado en 2016

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

artículo científico publicado en 2020

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

artículo científico publicado en 2017

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

artículo científico publicado en 2015

VDJviz: a versatile browser for immunogenomics data.

artículo científico publicado en 2016

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

artículo científico publicado en 2019

tcR: an R package for T cell receptor repertoire advanced data analysis.

artículo científico publicado en 2015

Lista de obras de Mikhail Shugay

A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies

A high-throughput assay for quantitative measurement of PCR errors

A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling

An overview of immunoinformatics approaches and databases linking T cell receptor repertoires to their antigen specificity

Antigen receptor repertoire profiling from RNA-seq data.

Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries

Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences

Benchmarking of T cell receptor repertoire profiling methods reveals large systematic biases

CD4+ T Cells Recognize Conserved Influenza A Epitopes through Shared Patterns of V-Gene Usage and Complementary Biochemical Features

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

Comparative Analysis of B-Cell Receptor Repertoires Induced by Live Yellow Fever Vaccine in Young and Middle-Age Donors

Comparative analysis of murine T-cell receptor repertoires.

Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex

Detecting T cell receptors involved in immune responses from single repertoire snapshots

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing.

Diversity in immunogenomics: the value and the challenge

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians

Exploring the pre-immune landscape of antigen-specific T cells

Genomic hallmarks of genes involved in chromosomal translocations in hematological cancer

High-quality full-length immunoglobulin profiling with unique molecular barcoding.

High-resolution repertoire analysis reveals a major bystander activation of Tfh and Tfr cells

Huge Overlap of Individual TCR Beta Repertoires.

LIF, a Novel STAT5-Regulated Gene, Is Aberrantly Expressed in Myeloproliferative Neoplasms

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

MHC-II alleles shape the CDR3 repertoires of conventional and regulatory naïve CD4+ T cells

MiTCR: software for T-cell receptor sequencing data analysis.

MiXCR: software for comprehensive adaptive immunity profiling.

Mother and child T cell receptor repertoires: deep profiling study.

Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions

P2RX7 purinoceptor: a therapeutic target for ameliorating the symptoms of duchenne muscular dystrophy

Pairing of T-cell receptor chains via emulsion PCR.

Quantitative profiling of immune repertoires for minor lymphocyte counts using unique molecular identifiers.

SARS-CoV-2 Epitopes Are Recognized by a Public and Diverse Repertoire of Human T Cell Receptors

SARS-CoV-2 epitopes are recognized by a public and diverse repertoire of human T-cell receptors

Sequencing rare T-cell populations

Single-cell analysis of glandular T cell receptors in Sjögren's syndrome.

T-cell tracking, safety, and effect of low-dose donor memory T-cell infusions after αβ T cell-depleted hematopoietic stem cell transplantation

TCR usage, gene expression and function of two distinct FOXP3(+)Treg subsets within CD4(+)CD25(hi) T cells identified by expression of CD39 and CD45RO.

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging

The Interplay between CD27dull and CD27bright B Cells Ensures the Flexibility, Stability, and Resilience of Human B Cell Memory

The evidence for increased L1 activity in the site of human adult brain neurogenesis.

Towards error-free profiling of immune repertoires.

Tracking T-cell immune reconstitution after TCRαβ/CD19-depleted hematopoietic cells transplantation in children.

VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

VDJviz: a versatile browser for immunogenomics data.

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

tcR: an R package for T cell receptor repertoire advanced data analysis.