Lista de obras - Sophia Tsoka - Dominio Público Uruguay

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin

artículo científico publicado en 2010

An immunologically relevant rodent model demonstrates safety of therapy using a tumour-specific IgE.

artículo científico publicado en 2018

Anti-Folate Receptor-α IgE but not IgG Recruits Macrophages to Attack Tumors via TNFα/MCP-1 Signaling

artículo científico publicado en 2017

Automated metabolic reconstruction for Methanococcus jannaschii

artículo científico publicado en 2004

Beyond 100 genomes

artículo científico publicado en 2003

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

artículo científico publicado en 2000

Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types.

artículo científico publicado en 2017

CoGenT++: an extensive and extensible data environment for computational genomics

artículo científico publicado en 2005

Community structure detection for overlapping modules through mathematical programming in protein interaction networks

artículo científico publicado en 2014

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

artículo científico publicado en 2004

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks

artículo científico publicado en 2015

Detection of composite communities in multiplex biological networks

artículo científico publicado en 2015

DyCoNet: a Gephi plugin for community detection in dynamic complex networks.

artículo científico publicado en 2014

Evaluation of annotation strategies using an entire genome sequence

artículo científico publicado en 2003

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

artículo científico publicado en 2005

Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks

artículo científico publicado en 2011

Functional and topological properties in hepatocellular carcinoma transcriptome

artículo científico publicado en 2012

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

artículo científico publicado en 2001

Gene network and proteomic analyses of cardiac responses to pathological and physiological stress.

artículo científico publicado en 2013

Genome evolution reveals biochemical networks and functional modules

artículo científico publicado en 2003

Genome-wide expression patterns in physiological cardiac hypertrophy

artículo científico publicado en 2010

Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma

artículo científico publicado en 2019

Integrative biology approach identifies cytokine targeting strategies for psoriasis

artículo científico publicado en 2014

Link Prediction Methods and Their Accuracy for Different Social Networks and Network Metrics

MINLP models for the synthesis of optimal peptide tags and downstream protein processing

artículo científico publicado en 2005

Mapping cis- and trans-regulatory effects across multiple tissues in twins

artículo científico publicado en 2012

Metabolic database systems for the analysis of genome-wide function

artículo científico publicado en 2003

Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome

artículo científico publicado en 2011

Microbe-host interplay in atopic dermatitis and psoriasis

artículo científico publicado en 2019

Microbial and transcriptional differences elucidate atopic dermatitis heterogeneity across skin sites

scientific article published on 01 October 2020

Modeling the percolation of annotation errors in a database of protein sequences

scientific article published on 01 December 2002

Module detection in complex networks using integer optimisation

artículo científico publicado en 2010

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

artículo científico publicado en 2013

Network-based piecewise linear regression for QSAR modelling

scientific article published on 01 September 2019

Optimal Piecewise Linear Regression Algorithm for QSAR Modelling

scientific article published on 24 September 2018

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework

artículo científico publicado en 2014

Pathway-level disease data mining through hyper-box principles.

artículo científico publicado en 2014

Percolation of annotation errors through hierarchically structured protein sequence databases

scientific article published on 01 February 2005

Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion

artículo científico publicado en 2000

Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species

artículo científico publicado en 2010

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

artículo científico publicado en 2011

Rapid monitoring of virus-like particles using an optical biosensor: a feasibility study

artículo científico publicado en 1998

Reactome Pengine: a web-logic API to the Homo sapiens reactome

artículo científico publicado en 2018

Recent developments and future directions in computational genomics

artículo científico publicado en 2000

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

artículo científico publicado en 1999

Robustness of the p53 network and biological hackers

artículo científico publicado en 2005

Stratification of co-evolving genomic groups using ranked phylogenetic profiles

artículo científico publicado en 2009

The phylogenetic extent of metabolic enzymes and pathways

artículo científico publicado en 2003

The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves

artículo científico publicado en 2016

Toward prediction of immune mechanisms and design of immunotherapies in melanoma

artículo científico

Transcriptome classification reveals molecular subtypes in psoriasis

artículo científico publicado en 2012

Using ILP to Identify Pathway Activation Patterns in Systems Biology

artículo científico publicado en 2016

Virus-like particle analysis in yeast homogenate using a laser light-scattering assay.

artículo científico publicado en 1999

Lista de obras de Sophia Tsoka

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin

An immunologically relevant rodent model demonstrates safety of therapy using a tumour-specific IgE.

Anti-Folate Receptor-α IgE but not IgG Recruits Macrophages to Attack Tumors via TNFα/MCP-1 Signaling

Automated metabolic reconstruction for Methanococcus jannaschii

Beyond 100 genomes

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types.

CoGenT++: an extensive and extensible data environment for computational genomics

Community structure detection for overlapping modules through mathematical programming in protein interaction networks

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks

Detection of composite communities in multiplex biological networks

DyCoNet: a Gephi plugin for community detection in dynamic complex networks.

Evaluation of annotation strategies using an entire genome sequence

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks

Functional and topological properties in hepatocellular carcinoma transcriptome

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

Gene network and proteomic analyses of cardiac responses to pathological and physiological stress.

Genome evolution reveals biochemical networks and functional modules

Genome-wide expression patterns in physiological cardiac hypertrophy

Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma

Integrative biology approach identifies cytokine targeting strategies for psoriasis

Link Prediction Methods and Their Accuracy for Different Social Networks and Network Metrics

MINLP models for the synthesis of optimal peptide tags and downstream protein processing

Mapping cis- and trans-regulatory effects across multiple tissues in twins

Metabolic database systems for the analysis of genome-wide function

Metabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome

Microbe-host interplay in atopic dermatitis and psoriasis

Microbial and transcriptional differences elucidate atopic dermatitis heterogeneity across skin sites

Modeling the percolation of annotation errors in a database of protein sequences

Module detection in complex networks using integer optimisation

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum

Network-based piecewise linear regression for QSAR modelling

Optimal Piecewise Linear Regression Algorithm for QSAR Modelling

Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework

Pathway-level disease data mining through hyper-box principles.

Percolation of annotation errors through hierarchically structured protein sequence databases

Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion

Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

Rapid monitoring of virus-like particles using an optical biosensor: a feasibility study

Reactome Pengine: a web-logic API to the Homo sapiens reactome

Recent developments and future directions in computational genomics

Reproducibility in genome sequence annotation: the Plasmodium falciparum chromosome 2 case

Robustness of the p53 network and biological hackers

Stratification of co-evolving genomic groups using ranked phylogenetic profiles

The phylogenetic extent of metabolic enzymes and pathways

The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves

Toward prediction of immune mechanisms and design of immunotherapies in melanoma

Transcriptome classification reveals molecular subtypes in psoriasis

Using ILP to Identify Pathway Activation Patterns in Systems Biology

Virus-like particle analysis in yeast homogenate using a laser light-scattering assay.