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Lista de obras de Ujjwal Neogi

A high rate of HIV-1 acquisition post immigration among migrants in Sweden determined by a CD4 T-cell decline trajectory model

artículo científico publicado en 2017

A high-risk gut microbiota configuration associates with fatal hyperinflammatory immune and metabolic responses to SARS-CoV-2

artículo científico publicado en 2022

A viral genome wide association study and genotypic resistance testing in patients failing first line antiretroviral therapy in the first large countrywide Ethiopian HIV cohort

artículo científico publicado en 2019

Altered Gut Microbiome under Antiretroviral Therapy: Impact of Efavirenz and Zidovudine

artículo científico publicado en 2020

Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and available of integrase inhibitors in Cape Town, South Africa.

artículo científico publicado en 2018

Antiretroviral potency of 4'-ethnyl-2'-fluoro-2'-deoxyadenosine, tenofovir alafenamide and second-generation NNRTIs across diverse HIV-1 subtypes

article

Author Correction: Analyses of HIV-1 integrase sequences prior to South African national HIV-treatment program and availability of integrase inhibitors in Cape Town, South Africa.

artículo científico publicado en 2018

Can HIV reverse transcriptase activity assay be a low-cost alternative for viral load monitoring in resource-limited settings?

artículo científico publicado en 2016

Characterization of HIV type 1 subtype C protease gene: selection of L63P mutation in protease inhibitor-naive Indian patients

artículo científico publicado en 2011

Characterization of Inducible Transcription and Translation-Competent HIV-1 Using the RNAscope ISH Technology at a Single-Cell Resolution

article

Clade C HIV-1 isolates circulating in Southern Africa exhibit a greater frequency of dicysteine motif-containing Tat variants than those in Southeast Asia and cause increased neurovirulence.

artículo científico publicado en 2013

Co-receptor tropism prediction among 1045 Indian HIV-1 subtype C sequences: Therapeutic implications for India

artículo científico publicado en 2010

Community prevalence of methicillin and vancomycin resistant Staphylococcus aureus in and around Bangalore, southern India

scientific article published on 01 May 2011

Cost-efficient HIV-1 drug resistance surveillance using multiplexed high-throughput amplicon sequencing: implications for use in low- and middle-income countries

artículo científico publicado en 2014

Deciphering the Role of Mucosal Immune Responses and the Cervicovaginal Microbiome in Resistance to HIV Infection in HIV-Exposed Seronegative (HESN) Women

artículo científico publicado en 2021

Diversity of HIV type 1 long terminal repeat (LTR) sequences following mother-to-child transmission in North India

artículo científico publicado en 2010

Dried blood spot HIV-1 RNA quantification: a useful tool for viral load monitoring among HIV-infected individuals in India

artículo científico publicado en 2012

Drug Resistance Mutations Against Protease, Reverse Transcriptase and Integrase Inhibitors in People Living With HIV-1 Receiving Boosted Protease Inhibitors in South Africa

scientific article published on 20 March 2020

Drug resistance in non-B subtype HIV-1: impact of HIV-1 reverse transcriptase inhibitors

artículo científico publicado en 2014

Drug resistance testing through remote genotyping and predicted treatment options in human immunodeficiency virus type 1 infected Tanzanian subjects failing first or second line antiretroviral therapy.

artículo científico publicado en 2017

Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells

artículo científico publicado en 2020

Effect of therapy switch on time to second-line antiretroviral treatment failure in HIV-infected patients

artículo científico

Effectiveness of first-line antiretroviral therapy and acquired drug resistance among HIV-1-infected children in India

artículo científico publicado en 2013

Emergence of HIV-1 drug resistance in antiretroviral therapy experienced perinatally infected children in South India

artículo científico publicado en 2012

Emergence of unique recombinant forms (URFs) in Indian HIV-1 epidemic: data from nationwide clinical cohort between 2007 and 2011.

artículo científico publicado en 2012

Ex-vivo antiretroviral potency of newer integrase strand transfer inhibitors cabotegravir and bictegravir in HIV type 1 non-B subtypes

artículo científico publicado en 2017

Factors influencing the efficacy of rilpivirine in HIV-1 subtype C in low- and middle-income countries

artículo científico publicado en 2015

GS-CA Compounds: First-In-Class HIV-1 Capsid Inhibitors Covering Multiple Grounds

scientific article published on 20 June 2019

Genetic analysis of HIV-1 Circulating Recombinant Form 02_AG, B and C subtype-specific envelope sequences from Northern India and their predicted co-receptor usage

artículo científico publicado en 2009

Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India

artículo científico publicado en 2010

Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr.

artículo científico publicado en 2009

Genetic architecture of HIV type 1 Nef and Tat from HLA-B57-typed long-term survivors in an Indian cohort of perinatally HIV-infected children.

artículo científico publicado en 2013

Genetic architecture of HIV-1 genes circulating in north India & their functional implications

artículo científico publicado en 2011

Genetic characterization of HIV type 1 Tat exon 1 from a southern Indian clinical cohort: identification of unique epidemiological signature residues

artículo científico publicado en 2012

Genetic factors associated with slow progression of HIV among perinatally-infected Indian children

artículo científico publicado en 2014

Genome-scale metabolic models for natural and long-term drug-induced viral control in HIV infection

artículo científico publicado en 2022

Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: functional and pathogenic implications of genetic variation.

scientific article published on June 2009

Gut microbiota diversity predicts immune status in HIV-1 infection.

artículo científico publicado en 2015

HIV elite control is associated with reduced TRAILshort expression

artículo científico publicado en 2019

HIV-1 Subtype C with PYxE Insertion Has Enhanced Binding of Gag-p6 to Host Cell Protein ALIX and Increased Replication Fitness

artículo científico publicado en 2019

HIV-1 coreceptor tropism in India: increasing proportion of X4-tropism in subtype C strains over two decades

artículo científico publicado en 2014

High concordance of genotypic coreceptor prediction in plasma-viral RNA and proviral DNA of HIV-1 subtype C: implications for use of whole blood DNA in resource-limited settings

artículo científico publicado en 2013

High viremia and low level of transmitted drug resistance in anti-retroviral therapy-naïve perinatally-infected children and adolescents with HIV-1 subtype C infection

artículo científico publicado en 2012

High viremia in HIV-1 subtype C infection and spread of the epidemic

artículo científico publicado en 2013

Higher prevalence of predicted X4-tropic strains in perinatally infected older children with HIV-1 subtype C in India

artículo científico publicado en 2012

Human APOBEC3G-mediated hypermutation is associated with antiretroviral therapy failure in HIV-1 subtype C-infected individuals

artículo científico publicado en 2013

Immune Checkpoints as the Immune System Regulators and Potential Biomarkers in HIV-1 Infection

article

In vitro replicative fitness of early Transmitted founder HIV-1 variants and sensitivity to Interferon alpha

artículo científico publicado en 2020

Increased replication capacity following evolution of PYxE insertion in Gag-p6 is associated with enhanced virulence in HIV-1 subtype C from East Africa.

artículo científico publicado en 2016

Limited evolution but increasing trends of primary non-nucleoside reverse transcriptase inhibitor resistance mutations in therapy-naive HIV-1-infected individuals in India.

artículo científico publicado en 2014

Long-term efficacy of first line antiretroviral therapy in Indian HIV-1 infected patients: a longitudinal cohort study

artículo científico publicado en 2013

MDR1 gene polymorphisms and HIV therapeutic response in South Indian population

article

MiDRMpol: A High-Throughput Multiplexed Amplicon Sequencing Workflow to Quantify HIV-1 Drug Resistance Mutations against Protease, Reverse Transcriptase, and Integrase Inhibitors

scientific article published on 30 August 2019

Microfluidic centrifugation assisted precipitation based DNA quantification

artículo científico publicado en 2019

Minor viral population with drug-resistant mutation and risk of persistent low-level viremia or 'blips' in HIV-1 subtype C.

artículo científico publicado en 2014

Molecular epidemiology of HIV-1 subtypes in India: origin and evolutionary history of the predominant subtype C.

artículo científico publicado en 2012

Multiple NF-κB sites in HIV-1 subtype C long terminal repeat confer superior magnitude of transcription and thereby the enhanced viral predominance

artículo científico publicado en 2012

Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus

artículo científico publicado en 2016

Mutational Heterogeneity in p6 Gag Late Assembly (L) Domains in HIV-1 Subtype C Viruses from South Africa

artículo científico publicado en 2015

Mutations in Long Terminal Repeats κB Transcription Factor Binding Sites in Plasma Virus Among South African People Living with HIV-1

artículo científico publicado en 2019

Naturally occurring polymorphisms and primary drug resistance profile among antiretroviral-naive individuals in Bangalore, India

artículo científico publicado en 2010

Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India

artículo científico publicado en 2008

Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients.

artículo científico publicado en 2014

Nucleoside-Modified mRNA Vaccines Protect IFNAR<sup>-/-</sup> Mice against Crimean-Congo Hemorrhagic Fever Virus Infection

artículo científico publicado en 2021

P20-05. Emergence of HIV-1 circulatory recombinant forms (CRFs) and unique recombinant forms (URFs) in North India: functional and pathogenic implications

article

Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurologic disease

artículo científico publicado en 2024

Performance of genotypic tools for prediction of tropism in HIV-1 subtype C V3 loop sequences

artículo científico publicado en 2015

Peripheral blood CD4<sup>+</sup>CCR6<sup>+</sup> compartment differentiates HIV-1 infected or seropositive elite controllers from long-term successfully treated individuals

artículo científico publicado en 2022

Phenotypic co-receptor tropism and Maraviroc sensitivity in HIV-1 subtype C from East Africa

artículo científico publicado en 2018

Phylogenetic Analysis of Ethiopian HIV-1 Subtype C Near Full-Length Genomes Reveals High Intrasubtype Diversity and a Strong Geographical Cluster

artículo científico publicado en 2016

Phylogenetic characterization of six full-length HIV-1 subtype C molecular clones from three patients: identification of rare subtype C strains containing two NF-κB motifs in the long terminal repeat

artículo científico publicado en 2014

Plasma Metabolic Signature and Abnormalities in HIV-Infected Individuals on Long-Term Successful Antiretroviral Therapy

scientific article published on 30 September 2019

Plasma soluble factor following two decades prolonged suppressive antiretroviral therapy in HIV-1-positive males: A cross-sectional study.

artículo científico publicado en 2018

Pretreatment drug resistance in a large countrywide Ethiopian HIV-1C cohort: a comparison of Sanger and high-throughput sequencing.

artículo científico publicado en 2018

Proceedings of the Frontiers of Retrovirology Conference 2016.

artículo científico publicado en 2016

Publisher Correction: In vitro replicative fitness of early Transmitted founder HIV-1 variants and sensitivity to Interferon alpha

artículo científico publicado en 2020

Quantitative humoral profiling of the HIV-1 proteome in elite controllers and patients with very long-term efficient antiretroviral therapy

artículo científico publicado en 2017

Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden

artículo científico publicado en 2017

Richer gut microbiota with distinct metabolic profile in HIV infected Elite Controllers

artículo científico publicado en 2017

Selection of nonnucleoside reverse transcriptase inhibitor-associated mutations in HIV-1 subtype C: evidence of etravirine cross-resistance

artículo científico publicado en 2011

Structural Implications of Genotypic Variations in HIV-1 Integrase From Diverse Subtypes

article

Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management

artículo científico publicado en 2015

Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral Therapy

artículo científico publicado en 2019

Temporal trends in the Swedish HIV-1 epidemic: increase in non-B subtypes and recombinant forms over three decades

artículo científico publicado en 2014

The expanding HIV-1 epidemic aggravates therapeutics and vaccine development programs in India

artículo científico publicado en 2009

The gp120 protein is a second determinant of decreased neurovirulence of Indian HIV-1C isolates compared to southern African HIV-1C isolates

artículo científico publicado en 2014

The microbial metabolite trimethylamine-N-oxide in association with inflammation and microbial dysregulation in three HIV cohorts at various disease stages

artículo científico publicado en 2018

Trans cohort metabolic reprogramming towards glutaminolysis in long-term successfully treated HIV-infection

artículo científico publicado en 2022

Transcriptomics and Targeted Proteomics Analysis to Gain Insights Into the Immune-control Mechanisms of HIV-1 Infected Elite Controllers.

artículo científico publicado en 2017

Type-I interferon signatures in SARS-CoV-2 infected Huh7 cells

artículo científico publicado en 2021

Unique Phenotypic Characteristics of Recently Transmitted HIV-1 Subtype C Envelope Glycoprotein gp120: Use of CXCR6 Coreceptor by Transmitted Founder Viruses.

artículo científico publicado en 2018

Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses

artículo científico publicado en 2020

Virological efficacy with first-line antiretroviral treatment in India: predictors of viral failure and evidence of viral resuppression

artículo científico publicado en 2015

Virological failure in patients with HIV-1 subtype C receiving antiretroviral therapy: an analysis of a prospective national cohort in Sweden

artículo científico publicado en 2016

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