Lista de obras - Jüri Reimand - Dominio Público Uruguay

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

artículo científico publicado en 2017

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

artículo científico publicado en 2020

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

Comprehensive identification of mutational cancer driver genes across 12 tumor types

artículo científico publicado en 2013

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

artículo científico publicado en 2010

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

artículo científico publicado en 2010

Computational approaches to identify functional genetic variants in cancer genomes

artículo científico publicado en 2013

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Disruption of Abi1/Hssh3bp1 expression induces prostatic intraepithelial neoplasia in the conditional Abi1/Hssh3bp1 KO mice

artículo científico publicado en 2012

Divergent clonal selection dominates medulloblastoma at recurrence

artículo científico publicado en 2016

Domain-mediated protein interaction prediction: From genome to network

artículo científico publicado en 2012

EAG2 potassium channel with evolutionarily conserved function as a brain tumor target

artículo científico publicado en 2015

EP-03MOLECULAR CLASSIFICATION OF EPENDYMAL TUMORS ACROSS ALL CNS COMPARTMENTS, HISTOPATHOLOGICAL GRADES AND AGE GROUPS.

artículo científico publicado en 2015

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

artículo científico publicado en 2015

Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer

artículo científico publicado en 2016

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

artículo científico publicado en 2016

Functional and genetic determinants of mutation rate variability in regulatory elements of cancer genomes

artículo científico publicado en 2021

Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition

artículo científico publicado en 2014

Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates

scholarly article by Raghuveera Kumar Goel published in January 2018

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

artículo científico

Human phospho-signaling networks of SARS-CoV-2 infection are rewired by population genetic variants

artículo científico publicado en 2022

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery

artículo científico publicado en 2014

Impact of outdated gene annotations on pathway enrichment analysis

artículo científico publicado en 2016

Integrative pathway enrichment analysis of multivariate omics data

artículo científico publicado en 2020

Intertumoral Heterogeneity within Medulloblastoma Subgroups

artículo científico

KEGGanim: pathway animations for high-throughput data

artículo científico publicado en 2007

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation.

artículo científico publicado en 2015

Mid-gestational gene expression profile in placenta and link to pregnancy complications

artículo científico publicado en 2012

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

artículo científico publicado en 2009

Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups

artículo científico publicado en 2015

New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs

artículo científico publicado en 2016

Notch1 regulates the initiation of metastasis and self-renewal of Group 3 medulloblastoma

artículo científico publicado en 2018

Pathogenic Germline Variants in 10,389 Adult Cancers

artículo científico publicado en 2018

Pathway and network analysis of cancer genomes

artículo científico publicado en 2015

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

artículo científico publicado en 2020

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

artículo científico publicado en 2019

Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS ⬇️

artículo científico publicado en 2018

Ranking genes by their co-expression to subsets of pathway members

artículo científico publicado en 2009

Relicensing of transcriptionally inactivated replication origins in budding yeast

artículo científico publicado en 2010

Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks

artículo científico publicado en 2011

Single allele loss-of-function mutations select and sculpt conditional cooperative networks in breast cancer

artículo científico publicado en 2021

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

artículo científico publicado en 2015

Spatial heterogeneity in medulloblastoma

artículo científico publicado en 2017

SubID, a non-median dichotomization tool for heterogeneous populations, reveals the pan-cancer significance of INPP4B and its regulation by EVI1 in AML.

artículo científico publicado en 2018

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

artículo científico publicado en 2012

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

artículo científico publicado en 2015

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers ⬇️

artículo científico publicado el 1 de enero de 2013

Systematic analysis of somatic mutations in phosphorylation signaling predicts novelcancer drivers.

artículo científico publicado en 2014

The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation

artículo científico publicado en 2009

The mutational landscape of phosphorylation signaling in cancer

artículo científico publicado en 2013

The transcriptional landscape of Shh medulloblastoma

artículo científico publicado en 2021

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling

artículo científico publicado en 2017

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

artículo científico publicado en 2016

VisHiC--hierarchical functional enrichment analysis of microarray data

artículo científico publicado en 2009

g:Profiler--a web server for functional interpretation of gene lists (2011 update).

artículo científico publicado en 2011

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

artículo científico

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

artículo científico publicado en 2016

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence

artículo científico publicado en 2012

Lista de obras de Jüri Reimand

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

ActiveDriverDB: human disease mutations and genome variation in post-translational modification sites of proteins

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

BEHST: genomic set enrichment analysis enhanced through integration of chromatin long-range interactions

Comprehensive identification of mutational cancer driver genes across 12 tumor types

Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets

Comprehensive transcriptome analysis of mouse embryonic stem cell adipogenesis unravels new processes of adipocyte development

Computational approaches to identify functional genetic variants in cancer genomes

Discovery and characterization of coding and non-coding driver mutations in more than 2,500 whole cancer genomes

Disruption of Abi1/Hssh3bp1 expression induces prostatic intraepithelial neoplasia in the conditional Abi1/Hssh3bp1 KO mice

Divergent clonal selection dominates medulloblastoma at recurrence

Domain-mediated protein interaction prediction: From genome to network

EAG2 potassium channel with evolutionarily conserved function as a brain tumor target

EP-03MOLECULAR CLASSIFICATION OF EPENDYMAL TUMORS ACROSS ALL CNS COMPARTMENTS, HISTOPATHOLOGICAL GRADES AND AGE GROUPS.

Evolutionary constraint and disease associations of post-translational modification sites in human genomes

Frequent mutations in acetylation and ubiquitination sites suggest novel driver mechanisms of cancer

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Functional and genetic determinants of mutation rate variability in regulatory elements of cancer genomes

Genome sequencing of SHH medulloblastoma predicts genotype-related response to smoothened inhibition

Global phosphoproteomic analysis identifies SRMS-regulated secondary signaling intermediates

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance

Human phospho-signaling networks of SARS-CoV-2 infection are rewired by population genetic variants

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery

Impact of outdated gene annotations on pathway enrichment analysis

Integrative pathway enrichment analysis of multivariate omics data

Intertumoral Heterogeneity within Medulloblastoma Subgroups

KEGGanim: pathway animations for high-throughput data

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation.

Mid-gestational gene expression profile in placenta and link to pregnancy complications

Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods

Molecular Classification of Ependymal Tumors across All CNS Compartments, Histopathological Grades, and Age Groups

New Brain Tumor Entities Emerge from Molecular Classification of CNS-PNETs

Notch1 regulates the initiation of metastasis and self-renewal of Group 3 medulloblastoma

Pathogenic Germline Variants in 10,389 Adult Cancers

Pathway and network analysis of cancer genomes

Pathway and network analysis of more than 2,500 whole cancer genomes

Pathway and network analysis of more than 2500 whole cancer genomes

Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap

Phosphoproteomics analysis identifies novel candidate substrates of the non-receptor tyrosine kinase, SRMS ⬇️

Ranking genes by their co-expression to subsets of pathway members

Relicensing of transcriptionally inactivated replication origins in budding yeast

Research resource: interactome of human embryo implantation: identification of gene expression pathways, regulation, and integrated regulatory networks

Single allele loss-of-function mutations select and sculpt conditional cooperative networks in breast cancer

Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity

Spatial heterogeneity in medulloblastoma

SubID, a non-median dichotomization tool for heterogeneous populations, reveals the pan-cancer significance of INPP4B and its regulation by EVI1 in AML.

Subgroup-specific structural variation across 1,000 medulloblastoma genomes

Systematic analysis of somatic mutations impacting gene expression in 12 tumour types

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers ⬇️

Systematic analysis of somatic mutations in phosphorylation signaling predicts novelcancer drivers.

The FunGenES database: a genomics resource for mouse embryonic stem cell differentiation

The mutational landscape of phosphorylation signaling in cancer

The transcriptional landscape of Shh medulloblastoma

Therapeutic targeting of ependymoma as informed by oncogenic enhancer profiling

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders

VisHiC--hierarchical functional enrichment analysis of microarray data

g:Profiler--a web server for functional interpretation of gene lists (2011 update).

g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments

g:Profiler-a web server for functional interpretation of gene lists (2016 update)

m:Explorer: multinomial regression models reveal positive and negative regulators of longevity in yeast quiescence