Lista de obras - Sarath Chandra Janga - Dominio Público Uruguay

A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels

scientific article published on 10 February 2020

A conserved enhancer regulates Il9 expression in multiple lineages

artículo científico publicado en 2018

A framework for identifying genotypic information from clinical records: exploiting integrated ontology structures to transfer annotations between ICD codes and Gene Ontologies.

artículo científico

A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes.

artículo científico publicado en 2010

An intricate network of conserved DNA upstream motifs and associated transcription factors regulate the expression of uromodulin gene.

artículo científico publicado en 2014

Bacterial regulatory networks are extremely flexible in evolution

artículo científico publicado en 2006

Bcl6 and Blimp1 reciprocally regulate ST2+ Treg cell development in the context of allergic airway inflammation

scientific article published on 13 March 2020

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches

artículo científico publicado en 2016

Building integrated ontological knowledge structures with efficient approximation algorithms

artículo científico publicado en 2015

CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion

artículo científico publicado en 2022

Community-acquired rhinovirus infection is associated with changes in the airway microbiome

artículo científico publicado en 2017

Comparative analysis of gene expression and regulation of replicative aging associated genes in S. cerevisiae.

artículo científico publicado en 2010

Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells

artículo científico publicado en 2016

Conservation of adjacency as evidence of paralogous operons

artículo científico publicado en 2004

Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli.

artículo científico publicado en 2007

Construction, structure and dynamics of post-transcriptional regulatory network directed by RNA-binding proteins

artículo científico

Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli

artículo científico publicado en 2007

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes

artículo científico publicado en 2012

Database of RNA binding protein expression and disease dynamics (READ DB).

artículo científico publicado en 2015

Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis Cirrhosis

artículo científico publicado en 2016

Differential miRNA Expression in Cells and Matrix Vesicles in Vascular Smooth Muscle Cells from Rats with Kidney Disease

artículo científico publicado en 2015

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.

artículo científico publicado en 2009

Dissecting the expression landscape of RNA-binding proteins in human cancers

artículo científico publicado en 2014

Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.

artículo científico publicado en 2010

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

artículo científico publicado en 2016

Diversity and abundance of phosphonate biosynthetic genes in nature

artículo científico publicado en 2013

Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner

artículo científico publicado en 2019

Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects

scientific article published on 03 March 2020

Epitranscriptomic Code and Its Alterations in Human Disease

scientific article published on 14 August 2018

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

artículo científico publicado en 2008

ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes

artículo científico publicado en 2016

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

artículo científico publicado en 2018

Expression levels of SF3B3 correlate with prognosis and endocrine resistance in estrogen receptor-positive breast cancer.

artículo científico publicado en 2014

Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli

artículo científico publicado en 2012

From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks

artículo científico publicado en 2012

Functional organisation of Escherichia coli transcriptional regulatory network

artículo científico publicado en 2008

Genome-wide analysis of mRNA decay patterns during early Drosophila development

artículo científico publicado en 2010

Genomic analysis of host - Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

artículo científico publicado en 2015

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

artículo científico publicado en 2009

Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology.

artículo científico publicado en 2007

Human protein-RNA interaction network is highly stable across mammals

artículo científico publicado en 2019

Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach

artículo científico publicado en 2006

Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin

artículo científico publicado en 2010

Interfacing systems biology and synthetic biology

artículo científico publicado en 2009

Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli

artículo científico publicado en 2007

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli

artículo científico publicado en 2005

Interplay between posttranscriptional and posttranslational interactions of RNA-binding proteins

scientific article published on 09 April 2011

Knowledge Discovery Using Big Data in Biomedical Systems

artículo científico publicado en 2015

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome

artículo científico publicado en 2021

Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins

artículo científico publicado en 2019

Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathway

artículo científico publicado en 2018

MicroRNAs as post-transcriptional machines and their interplay with cellular networks

artículo científico

Mutational landscape of RNA-binding proteins in human cancers

artículo científico publicado en 2017

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons

artículo científico publicado en 2005

Network-based approaches for linking metabolism with environment

artículo científico publicado en 2008

New Twists in Detecting mRNA Modification Dynamics

artículo científico publicado en 2020

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data

scientific article published on 28 June 2019

OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes

artículo científico publicado en 2015

Operons and the effect of genome redundancy in deciphering functional relationships using phylogenetic profiles

artículo científico publicado en 2008

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes

artículo científico publicado en 2017

Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.

artículo científico publicado en 2017

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

artículo científico publicado en 2009

Prediction and Validation of Transcription Factors Modulating the Expression of Sestrin3 Gene Using an Integrated Computational and Experimental Approach.

artículo científico publicado en 2016

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome

artículo científico publicado en 2013

Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

artículo científico publicado en 2014

Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers.

artículo científico publicado en 2015

RNA Editing in Pathogenesis of Cancer

artículo científico publicado en 2017

RNA-binding proteins in eye development and disease: implication of conserved RNA granule components

artículo científico publicado en 2016

Relationship between differential hepatic microRNA expression and decreased hepatic cytochrome P450 3A activity in cirrhosis

artículo científico publicado en 2013

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans

artículo científico publicado en 2020

Role of lncRNAs in health and disease-size and shape matter

artículo científico

SARS-CoV-2 contributes to altering the post-transcriptional regulatory networks across human tissues by sponging RNA binding proteins and micro-RNAs

artículo científico publicado en 2020

STAT5 promotes accessibility and is required for BATF-mediated plasticity at the Il9 locus

artículo científico publicado en 2020

Scaling relationship in the gene content of transcriptional machinery in bacteria

artículo científico publicado en 2009

Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.

artículo científico

Splicing factor controls ER-positive breast cancer by altering metabolic pathways

artículo científico publicado en 2019

Structure and evolution of gene regulatory networks in microbial genomes

artículo científico publicado en 2007

Structure and organization of drug-target networks: insights from genomic approaches for drug discovery

artículo científico publicado en 2009

Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean

artículo científico publicado en 2012

Targeting Bim via a lncRNA Morrbid Regulates the Survival of Preleukemic and Leukemic Cells

artículo científico publicado en 2020

Ten simple rules for organizing a scientific meeting

artículo científico publicado en 2008

The RNA-binding protein Musashi1 affects medulloblastoma growth via a network of cancer-related genes and is an indicator of poor prognosis

artículo científico publicado en 2012

The RavA-ViaA Chaperone-Like System Interacts with and Modulates the Activity of the Fumarate Reductase Respiratory Complex

artículo científico publicado en 2016

The distinctive signatures of promoter regions and operon junctions across prokaryotes

artículo científico publicado en 2006

The human RBPome: from genes and proteins to human disease

artículo científico publicado en 2015

The network of transcriptional interactions imposes linear constrains in the genome

artículo científico publicado en 2005

The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons ⬇️

artículo científico publicado en 2006

Transcript stability in the protein interaction network of Escherichia coli

artículo científico publicado en 2008

Transcriptional profiling of fetal hypothalamic TRH neurons

artículo científico publicado en 2011

Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes

artículo científico publicado en 2008

Transcriptional regulation shapes the organization of genes on bacterial chromosomes

artículo científico publicado en 2009

Transcriptome analysis of developing lens reveals abundance of novel transcripts and extensive splicing alterations

artículo científico publicado en 2017

Uncovering RNA binding proteins associated with age and gender during liver maturation.

artículo científico publicado en 2015

Whole-genome sequence of sungri/96 vaccine strain of peste des petits ruminants virus

scientific article published on 13 February 2014

Lista de obras de Sarath Chandra Janga

A circular RNA from the MDM2 locus controls cell cycle progression by suppressing p53 levels

A conserved enhancer regulates Il9 expression in multiple lineages

A framework for identifying genotypic information from clinical records: exploiting integrated ontology structures to transfer annotations between ICD codes and Gene Ontologies.

A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes.

An intricate network of conserved DNA upstream motifs and associated transcription factors regulate the expression of uromodulin gene.

Bacterial regulatory networks are extremely flexible in evolution

Bcl6 and Blimp1 reciprocally regulate ST2+ Treg cell development in the context of allergic airway inflammation

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches

Building integrated ontological knowledge structures with efficient approximation algorithms

CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion

Community-acquired rhinovirus infection is associated with changes in the airway microbiome

Comparative analysis of gene expression and regulation of replicative aging associated genes in S. cerevisiae.

Comparative and temporal transcriptome analysis of peste des petits ruminants virus infected goat peripheral blood mononuclear cells

Conservation of adjacency as evidence of paralogous operons

Conservation of transcriptional sensing systems in prokaryotes: a perspective from Escherichia coli.

Construction, structure and dynamics of post-transcriptional regulatory network directed by RNA-binding proteins

Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes

Database of RNA binding protein expression and disease dynamics (READ DB).

Differential Expression of miRNAs in Nontumor Liver Tissue of Patients With Hepatocellular Cancer Caused by Nonalcoholic Steatohepatitis Cirrhosis

Differential miRNA Expression in Cells and Matrix Vesicles in Vascular Smooth Muscle Cells from Rats with Kidney Disease

Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks.

Dissecting the expression landscape of RNA-binding proteins in human cancers

Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.

Dissecting the expression relationships between RNA-binding proteins and their cognate targets in eukaryotic post-transcriptional regulatory networks

Diversity and abundance of phosphonate biosynthetic genes in nature

Early transcriptome profile of goat peripheral blood mononuclear cells (PBMCs) infected with peste des petits ruminant's vaccine virus (Sungri/96) revealed induction of antiviral response in an interferon independent manner

Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects

Epitranscriptomic Code and Its Alterations in Human Disease

Eukaryotic gene regulation in three dimensions and its impact on genome evolution

ExSurv: A Web Resource for Prognostic Analyses of Exons Across Human Cancers Using Clinical Transcriptomes

Express: A database of transcriptome profiles encompassing known and novel transcripts across multiple development stages in eye tissues.

Expression levels of SF3B3 correlate with prognosis and endocrine resistance in estrogen receptor-positive breast cancer.

Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli

From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks

Functional organisation of Escherichia coli transcriptional regulatory network

Genome-wide analysis of mRNA decay patterns during early Drosophila development

Genomic analysis of host - Peste des petits ruminants vaccine viral transcriptome uncovers transcription factors modulating immune regulatory pathways

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

Highlights from the Third International Society for Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology.

Human protein-RNA interaction network is highly stable across mammals

Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach

Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin

Interfacing systems biology and synthetic biology

Internal versus external effector and transcription factor gene pairs differ in their relative chromosomal position in Escherichia coli

Internal-sensing machinery directs the activity of the regulatory network in Escherichia coli

Interplay between posttranscriptional and posttranslational interactions of RNA-binding proteins

Knowledge Discovery Using Big Data in Biomedical Systems

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome

Long Non-Coding RNA Expression Levels Modulate Cell-Type-Specific Splicing Patterns by Altering Their Interaction Landscape with RNA-Binding Proteins

Loss of epigenetic regulator TET2 and oncogenic KIT regulate myeloid cell transformation via PI3K pathway

MicroRNAs as post-transcriptional machines and their interplay with cellular networks

Mutational landscape of RNA-binding proteins in human cancers

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons

Network-based approaches for linking metabolism with environment

New Twists in Detecting mRNA Modification Dynamics

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data

OperomeDB: A Database of Condition-Specific Transcription Units in Prokaryotic Genomes

Operons and the effect of genome redundancy in deciphering functional relationships using phylogenetic profiles

PSIP1/p75 promotes tumorigenicity in breast cancer cells by promoting the transcription of cell cycle genes

Paracrine IL-2 Is Required for Optimal Type 2 Effector Cytokine Production.

Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families

Prediction and Validation of Transcription Factors Modulating the Expression of Sestrin3 Gene Using an Integrated Computational and Experimental Approach.

Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome

Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance

Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers.

RNA Editing in Pathogenesis of Cancer

RNA-binding proteins in eye development and disease: implication of conserved RNA granule components

Relationship between differential hepatic microRNA expression and decreased hepatic cytochrome P450 3A activity in cirrhosis

Role of SARS-CoV-2 in Altering the RNA-Binding Protein and miRNA-Directed Post-Transcriptional Regulatory Networks in Humans

Role of lncRNAs in health and disease-size and shape matter

SARS-CoV-2 contributes to altering the post-transcriptional regulatory networks across human tissues by sponging RNA binding proteins and micro-RNAs

STAT5 promotes accessibility and is required for BATF-mediated plasticity at the Il9 locus

Scaling relationship in the gene content of transcriptional machinery in bacteria

Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.

Splicing factor controls ER-positive breast cancer by altering metabolic pathways

Structure and evolution of gene regulatory networks in microbial genomes

Structure and organization of drug-target networks: insights from genomic approaches for drug discovery

Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean