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Lista de obras de Xavier Didelot

A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data

artículo científico publicado en 2014

A Role for Tetracycline Selection in Recent Evolution of Agriculture-Associated PCR Ribotype 078

artículo científico publicado en 2019

A barrier to homologous recombination between sympatric strains of the cooperative soil bacterium Myxococcus xanthus

artículo científico publicado en 2016

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination?

artículo científico publicado en 2006

A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011-2014

artículo científico publicado en 2017

A comparison of homologous recombination rates in bacteria and archaea

artículo científico publicado en 2008

A dynamic power-law sexual network model of gonorrhoea outbreaks

artículo científico publicado en 2019

A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination

artículo científico publicado en 2018

A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance

scientific article (publication date: 2012)

A role for tetracycline selection in the evolution ofClostridium difficilePCR-ribotype 078

Bayesian Inference of the Evolution of a Phenotype Distribution on a Phylogenetic Tree.

artículo científico publicado en 2016

Bayesian inference of ancestral dates on bacterial phylogenetic trees

Bayesian inference of infectious disease transmission from whole-genome sequence data

artículo científico publicado en 2014

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data

artículo científico publicado en 2014

Bidirectional genomic exchange between Helicobacter pylori strains from a family in Coventry, United Kingdom

artículo científico publicado en 2014

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

artículo científico publicado en 2014

Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans

artículo científico publicado en 2015

Clinical Clostridium difficile: clonality and pathogenicity locus diversity

artículo científico publicado en 2011

ClonalFrameML: efficient inference of recombination in whole bacterial genomes

artículo científico publicado en 2015

Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle.

artículo científico publicado en 2011

Clostridium difficile in England: can we stop washing our hands? - Authors' reply ⬇️

artículo científico publicado en 2017

Clostridium difficile trehalose metabolism variants are common and not associated with adverse patient outcomes when variably present in the same lineage

artículo científico publicado en 2019

Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range.

artículo científico publicado en 2013

Comparisons of infant Escherichia coli isolates link genomic profiles with adaptation to the ecological niche

artículo científico publicado en 2013

Correction to: Neisseria lactamica Y92-1009 complete genome sequence.

artículo científico publicado en 2018

Corrigendum: Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages

scientific article published on 01 September 2018

Declaring a tuberculosis outbreak over with genomic epidemiology

artículo científico publicado en 2016

Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis

artículo científico publicado en 2018

Diverse sources of C. difficile infection identified on whole-genome sequencing

artículo científico publicado en 2013

Dynamics of genome change among Legionella species

artículo científico publicado en 2016

Effects of control interventions on Clostridium difficile infection in England: an observational study ⬇️

artículo científico publicado en 2017

Efficient inference of recombination hot regions in bacterial genomes.

artículo científico publicado en 2014

Emergence of methicillin resistance predates the clinical use of antibiotics

artículo científico publicado en 2022

Epidemic Clones, Oceanic Gene Pools, and Eco-LD in the Free Living Marine Pathogen Vibrio parahaemolyticus.

artículo científico publicado en 2015

Epidemiological Trends of Antibiotic Resistant Gonorrhoea in the United Kingdom

artículo científico publicado en 2018

Epidemiological analysis of the Eyam plague outbreak of 1665-1666.

artículo científico publicado en 2016

Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year ⬇️

Estimating the fitness cost and benefit of cefixime resistance in Neisseria gonorrhoeae to inform prescription policy: A modelling study

artículo científico publicado en 2017

Evolution and population structure of Salmonella enterica serovar Newport

artículo científico publicado en 2010

Evolution of pathogenicity in the Bacillus cereus group

artículo científico publicado en 2009

Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131

artículo científico publicado en 2016

Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease

artículo científico publicado en 2012

Evolutionary history of the Clostridium difficile pathogenicity locus ⬇️

artículo científico publicado en 2014

Evolutionary history of the global emergence of the Escherichia coli epidemic clone ST131

scholarly article published 6 November 2015

Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

artículo científico publicado en 2015

Genealogical typing of Neisseria meningitidis.

scientific article published on 30 July 2009

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting

artículo científico publicado en 2014

Genome-wide analysis of chromosomal import patterns after natural transformation of Helicobacter pylori

artículo científico publicado en 2016

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

artículo científico publicado en 2016

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

Genome-wide association of functional traits linked with Campylobacter jejuni survival from farm to fork

article published in 2016

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter

artículo científico publicado en 2013

Genomic Analysis and Comparison of Two Gonorrhea Outbreaks

scientific article published on 28 June 2016

Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing Outbreaks

artículo científico publicado en 2017

Genomic Investigation of a Mycobacterium tuberculosis Outbreak Involving Prison and Community Cases in Florida, United States

scientific article published on 01 October 2018

Genomic analysis to improve the management of outbreaks of bacterial infection

artículo científico publicado en 2013

Genomic characterization of the Bacillus cereus sensu lato species: backdrop to the evolution of Bacillus anthracis

artículo científico publicado en 2012

Genomic epidemiology of Vibrio cholerae reveals the regional and global spread of two epidemic non-toxigenic lineages

scientific article published on 18 February 2020

Genomic evolution and transmission of Helicobacter pylori in two South African families.

artículo científico publicado en 2013

Genomic surveillance of Neisseria gonorrhoeae to investigate the distribution and evolution of antimicrobial-resistance determinants and lineages

artículo científico publicado en 2018

Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone

artículo científico publicado en 2013

Helicobacter pylori genome evolution during human infection

artículo científico publicado en 2011

Hunting alters viral transmission and evolution in a large carnivore

scientific article published on 27 January 2022

Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis

scientific article published on 09 August 2016

Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli

artículo científico publicado en 2012

Inference of bacterial microevolution using multilocus sequence data

artículo científico publicado en 2006

Inference of homologous recombination in bacteria using whole-genome sequences

artículo científico publicado en 2010

Inference of the properties of the recombination process from whole bacterial genomes

scientific article published on 30 October 2013

Inferring genomic flux in bacteria

artículo científico publicado en 2008

Integrated Analysis of Patient Networks and Plasmid Genomes to Investigate a Regional, Multispecies Outbreak of Carbapenemase-Producing Enterobacterales Carrying Both <i>bla</i>IMP and <i>mcr-9</i> Genes

scientific article published in 2024

Interplay of recombination and selection in the genomes of Chlamydia trachomatis

artículo científico publicado en 2011

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

artículo científico publicado en 2015

Lineage specific recombination rates and microevolution in Listeria monocytogenes

artículo científico publicado en 2008

Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations.

artículo científico publicado en 2017

Machine-learning-assisted selection of antibiotic prescription

scientific article published on 01 July 2019

Maternal high fat diet during pregnancy and lactation alters hepatic expression of insulin like growth factor-2 and key microRNAs in the adult offspring

artículo científico publicado en 2009

Measurably evolving pathogens in the genomic era

artículo científico publicado en 2015

Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection

artículo científico publicado en 2018

Microevolutionary analysis of Clostridium difficile genomes to investigate transmission

artículo científico publicado en 2012

Mismatch induced speciation in Salmonella: model and data

artículo científico publicado en 2006

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

artículo científico publicado en 2014

Model-based analysis of an outbreak of bubonic plague in Cairo in 1801

artículo científico publicado en 2017

Modeling the growth and decline of pathogen effective population size provides insight into epidemic dynamics and drivers of antimicrobial resistance

artículo científico publicado en 2018

Modeling the growth and decline of pathogen effective population size provides insight into epidemic dynamics and drivers of antimicrobial resistance

Molecular Signatures Identify a Candidate Target of Balancing Selection in an arcD-Like Gene of Staphylococcus epidermidis ⬇️

artículo científico publicado el 10 de octubre de 2012

Mosaic DNA imports with interspersions of recipient sequence after natural transformation of Helicobacter pylori

artículo científico publicado en 2008

Neisseria lactamica Y92-1009 complete genome sequence.

artículo científico publicado en 2017

OutbreakTools: a new platform for disease outbreak analysis using the R software

artículo científico publicado en 2014

Patterns of gene flow define species of thermophilic Archaea

artículo científico publicado en 2012

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

artículo científico publicado en 2016

Pneumococcal capsule synthesis locus cps as evolutionary hotspot with potential to generate novel serotypes by recombination.

artículo científico publicado en 2017

Population genomics of Chlamydia trachomatis: insights on drift, selection, recombination, and population structure.

artículo científico publicado en 2012

Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance

artículo científico publicado en 2015

Population structure of the Yersinia pseudotuberculosis complex according to multilocus sequence typing

artículo científico publicado en 2011

Progressive genome-wide introgression in agricultural Campylobacter coli

artículo científico publicado en 2012

Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus.

artículo científico publicado en 2018

Re-emergence of methicillin susceptibility in a resistant lineage of Staphylococcus aureus

artículo científico publicado en 2017

RecGraph: recombination-aware alignment of sequences to variation graphs

artículo científico publicado en 2024

Recombination and population structure in Salmonella enterica.

artículo científico publicado en 2011

Recombination shapes genome architecture in an organism from the archaeal domain.

artículo científico publicado en 2014

Recombinational switching of the Clostridium difficile S-layer and a novel glycosylation gene cluster revealed by large-scale whole-genome sequencing

artículo científico publicado en 2012

Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.

artículo científico publicado en 2017

Role of energy sensor TlpD of Helicobacter pylori in gerbil colonization and genome analyses after adaptation in the gerbil

scientific article published on 08 July 2013

SimBac: simulation of whole bacterial genomes with homologous recombination

artículo científico publicado en 2016

SimMLST: simulation of multi-locus sequence typing data under a neutral model

artículo científico publicado en 2009

Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks

artículo científico publicado en 2017

Testing for gonorrhoea should routinely include the pharynx

artículo científico publicado en 2018

Tetracycline Selective Pressure and Homologous Recombination Shape the Evolution of Chlamydia suis: A Recently Identified Zoonotic Pathogen

artículo científico publicado en 2016

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria.

artículo científico publicado en 2015

The application of genomics to tracing bacterial pathogen transmission.

artículo científico publicado en 2014

The complexity and diversity of the Pathogenicity Locus in Clostridium difficile clade 5

artículo científico publicado en 2014

The global distribution and spread of the mobilized colistin resistance gene mcr-1.

artículo científico publicado en 2018

The nucleotide excision repair (NER) system of Helicobacter pylori: role in mutation prevention and chromosomal import patterns after natural transformation

artículo científico publicado en 2012

The role of China in the global spread of the current cholera pandemic.

artículo científico publicado en 2015

The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study

artículo científico publicado en 2013

Transforming clinical microbiology with bacterial genome sequencing.

artículo científico publicado en 2012

Whole genome sequencing in the prevention and control of Staphylococcus aureus infection.

artículo científico publicado en 2012

Whole genome sequencing of Neisseria gonorrhoeae reveals transmission clusters involving patients of mixed HIV serostatus

artículo científico publicado en 2017

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae: an observational study

artículo científico publicado en 2016

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

artículo científico publicado en 2013

Within-host evolution of bacterial pathogens

artículo científico publicado en 2016

Worldwide Population Structure, Long-Term Demography, and Local Adaptation of Helicobacter pylori.

artículo científico publicado en 2015

outbreaker2: a modular platform for outbreak reconstruction

scholarly article by Finlay Campbell published in October 2018

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