Lista de obras - Dirk Walther - Dominio Público Uruguay

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Assessment of drought tolerance and its potential yield penalty in potato

artículo científico publicado en 2015

Basecalling with LifeTrace

artículo científico publicado en 2001

Brownian dynamics simulation of the lateral distribution of charged membrane components

artículo científico publicado en 1996

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

artículo científico publicado en 2015

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana

artículo científico publicado en 2012

Characterization and identification of cis-regulatory elements in Arabidopsis based on single-nucleotide polymorphism information.

artículo científico publicado en 2013

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply

artículo científico publicado en 2017

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

artículo científico publicado en 2009

Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis

artículo científico publicado en 2003

Co-evolution of proteins with their interaction partners

artículo científico publicado en 2000

Comparative analysis of miRNAs and their targets across four plant species

artículo científico publicado en 2011

Computational phosphorylation network reconstruction: methods and resources.

artículo científico publicado en 2015

Conducting molecular biomarker discovery studies in plants

artículo científico publicado en 2012

Control of retrograde signalling by protein import and cytosolic folding stress

scientific article published on 06 May 2019

Decision tree supported substructure prediction of metabolites from GC-MS profiles

artículo científico publicado en 2010

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

artículo científico publicado en 2009

Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress

artículo científico publicado en 2010

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends

artículo científico publicado en 2016

Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling

artículo científico publicado en 2019

Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein

artículo científico publicado en 2022

Endogenous Arabidopsis messenger RNAs transported to distant tissues

artículo científico publicado en 2015

Erratum to: 'The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?'.

artículo científico publicado en 2016

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

scholarly article published in Metabolomics

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

artículo científico publicado en 2008

Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation: more than a hemodynamic marker

artículo científico publicado en 2006

Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.)

artículo científico publicado en 2021

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone

artículo científico publicado en 2012

Graph-based models of the <i>Oenothera</i> mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization

artículo científico publicado en 2022

Growth under Fluctuating Light Reveals Large Trait Variation in a Panel of Arabidopsis Accessions

artículo científico publicado en 2020

Helix-helix packing angle preferences for finite helix axes

artículo científico publicado en 1998

Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves

artículo científico publicado en 2019

Identification and classification of ncRNA molecules using graph properties

artículo científico publicado en 2009

Identification of a prion protein epitope modulating transmission of bovine spongiform encephalopathy prions to transgenic mice ⬇️

artículo científico publicado el 23 de diciembre de 1997

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana

artículo científico publicado en 2021

Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing

artículo científico publicado en 2009

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks

artículo científico publicado en 2011

Intrahelical side chain-side chain contacts: the consequences of restricted rotameric states and implications for helix engineering and design

artículo científico publicado en 1996

Limited Phosphate: Mobile RNAs convey the message

artículo científico publicado en 2016

Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites ⬇️

artículo científico publicado el 23 de junio de 2011

Mass Spectral Search and Analysis Using the Golm Metabolome Database

Matapax: an online high-throughput genome-wide association study pipeline.

artículo científico publicado en 2012

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

artículo científico publicado en 2014

Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast

artículo científico publicado en 2010

Metabolite and transcript markers for the prediction of potato drought tolerance.

artículo científico publicado en 2017

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii

artículo científico

Modeling RNA loops using sequence homology and geometric constraints

artículo científico publicado en 2010

MolSurfer: A macromolecular interface navigator

artículo científico publicado en 2003

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

scientific article published on 01 July 1999

Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme

artículo científico publicado en 2015

Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling.

artículo científico publicado en 2006

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

artículo científico publicado en 2007

Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity.

artículo científico publicado en 2015

Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.

artículo científico publicado en 2018

Principles of helix-helix packing in proteins: the helical lattice superposition model

artículo científico publicado en 1996

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

artículo científico publicado en 2007

Progress in Chemometrics and Biostatistics for Plant Applications, or: A Good Red Wine is a Bad White Wine

article

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

artículo científico publicado en 2010

Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment

artículo científico publicado en 2009

Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana

artículo científico

Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules

article by Dirk Walther et al published 1 April 2000 in Journal of Applied Crystallography

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

artículo científico publicado en 2010

Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling

artículo científico publicado en 2009

Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABAA) receptor gamma2 subunit, mediates subunit interaction and cell surface localization

artículo científico publicado en 2004

Similar Yet Different-Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins

artículo científico publicado en 2020

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana

artículo científico publicado en 2010

Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein

artículo científico publicado en 2000

Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coil

artículo científico publicado en 1997

Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding.

artículo científico publicado en 2016

Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge

artículo científico publicado en 2015

The Golm Metabolome Database: a database for GC-MS based metabolite profiling

scholarly article by Jan Hummel et al published 2007 in Topics in current genetics

The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information

artículo científico publicado en 2016

The Metabolic Interplay between Plants and Phytopathogens

artículo científico publicado en 2013

The complexity of gene expression dynamics revealed by permutation entropy.

artículo científico publicado en 2010

The drought response of potato reference cultivars with contrasting tolerance

artículo científico publicado en 2016

The influence of the local sequence environment on RNA loop structures

artículo científico publicado en 2011

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles

artículo científico publicado en 2008

The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?

artículo científico publicado en 2016

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana

artículo científico publicado en 2006

The roles of post-translational modifications in the context of protein interaction networks

artículo científico publicado en 2015

The sucrose-trehalose 6-phosphate (Tre6P) nexus: specificity and mechanisms of sucrose signalling by Tre6P.

artículo científico publicado en 2014

WebMol--a Java-based PDB viewer.

artículo científico publicado en 1997

pcaMethods--a bioconductor package providing PCA methods for incomplete data

artículo científico publicado en 2007

tRNA-Related Sequences Trigger Systemic mRNA Transport in Plants.

artículo científico publicado en 2016

Lista de obras de Dirk Walther

Analysis of Arabidopsis natural variation in biomass accumulation and metabolism

Assessment of drought tolerance and its potential yield penalty in potato

Basecalling with LifeTrace

Brownian dynamics simulation of the lateral distribution of charged membrane components

COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana

Characterization and identification of cis-regulatory elements in Arabidopsis based on single-nucleotide polymorphism information.

Characterization of the Wheat Leaf Metabolome during Grain Filling and under Varied N-Supply

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis

Co-evolution of proteins with their interaction partners

Comparative analysis of miRNAs and their targets across four plant species

Computational phosphorylation network reconstruction: methods and resources.

Conducting molecular biomarker discovery studies in plants

Control of retrograde signalling by protein import and cytosolic folding stress

Decision tree supported substructure prediction of metabolites from GC-MS profiles

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins

Dynamic transcriptional and metabolic responses in yeast adapting to temperature stress

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends

Effect of Senescence Phenotypes and Nitrate Availability on Wheat Leaf Metabolome during Grain Filling

Emergence of novel RNA editing sites by changes in the binding affinity of a conserved PPR protein

Endogenous Arabidopsis messenger RNAs transported to distant tissues

Erratum to: 'The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?'.

Erratum to: COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access

Expression profiling of rice cultivars differing in their tolerance to long-term drought stress

Gene expression profiles and B-type natriuretic peptide elevation in heart transplantation: more than a hemodynamic marker

Genome-Wide Approach to Identify Quantitative Trait Loci for Drought Tolerance in Tetraploid Potato (Solanum tuberosum L.)

Give It AGO: The Search for miRNA-Argonaute Sorting Signals in Arabidopsis thaliana Indicates a Relevance of Sequence Positions Other than the 5'-Position Alone

Graph-based models of the <i>Oenothera</i> mitochondrial genome capture the enormous complexity of higher plant mitochondrial DNA organization

Growth under Fluctuating Light Reveals Large Trait Variation in a Panel of Arabidopsis Accessions

Helix-helix packing angle preferences for finite helix axes

Highly Resolved Systems Biology to Dissect the Etioplast-to-Chloroplast Transition in Tobacco Leaves

Identification and classification of ncRNA molecules using graph properties

Identification of a prion protein epitope modulating transmission of bovine spongiform encephalopathy prions to transgenic mice ⬇️

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana

Identification of nutrient-responsive Arabidopsis and rapeseed microRNAs by comprehensive real-time polymerase chain reaction profiling and small RNA sequencing

Integration of proteomic and metabolomic profiling as well as metabolic modeling for the functional analysis of metabolic networks

Intrahelical side chain-side chain contacts: the consequences of restricted rotameric states and implications for helix engineering and design

Limited Phosphate: Mobile RNAs convey the message

Local Absence of Secondary Structure Permits Translation of mRNAs that Lack Ribosome-Binding Sites ⬇️

Mass Spectral Search and Analysis Using the Golm Metabolome Database

Matapax: an online high-throughput genome-wide association study pipeline.

Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs.

Metabolic pathway relationships revealed by an integrative analysis of the transcriptional and metabolic temperature stress-response dynamics in yeast

Metabolite and transcript markers for the prediction of potato drought tolerance.

Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii

Modeling RNA loops using sequence homology and geometric constraints

MolSurfer: A macromolecular interface navigator

MolSurfer: two-dimensional maps for navigating three-dimensional structures of proteins

Multiple RNA processing defects and impaired chloroplast function in plants deficient in the organellar protein-only RNase P enzyme

Noninvasive discrimination of rejection in cardiac allograft recipients using gene expression profiling.

PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

Physicochemical characteristics of structurally determined metabolite-protein and drug-protein binding events with respect to binding specificity.

Plant temperature acclimation and growth rely on cytosolic ribosome biogenesis factor homologs.

Principles of helix-helix packing in proteins: the helical lattice superposition model

ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites

Progress in Chemometrics and Biostatistics for Plant Applications, or: A Good Red Wine is a Bad White Wine

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

Ratio-dependent significance thresholds in reciprocal 15N-labeling experiments as a robust tool in detection of candidate proteins responding to biological treatment

Reconstruction and analysis of nutrient-induced phosphorylation networks in Arabidopsis thaliana

Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules

Robin: an intuitive wizard application for R-based expression microarray quality assessment and analysis

Sequence-structure relationships in RNA loops: establishing the basis for loop homology modeling

Serine 171, a conserved residue in the gamma-aminobutyric acid type A (GABAA) receptor gamma2 subunit, mediates subunit interaction and cell surface localization

Similar Yet Different-Structural and Functional Diversity among Arabidopsis thaliana LEA_4 Proteins

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana

Solution structural studies and low-resolution model of the Schizosaccharomyces pombe sap1 protein

Solution structure of the spectrin repeat: a left-handed antiparallel triple-helical coiled-coil

Spatial proximity statistics suggest a regulatory role of protein phosphorylation on compound binding.

Substantial reprogramming of the Eutrema salsugineum (Thellungiella salsuginea) transcriptome in response to UV and silver nitrate challenge

The Golm Metabolome Database: a database for GC-MS based metabolite profiling

The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information

The Metabolic Interplay between Plants and Phytopathogens

The complexity of gene expression dynamics revealed by permutation entropy.

The drought response of potato reference cultivars with contrasting tolerance

The influence of the local sequence environment on RNA loop structures

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles

The orientation of transcription factor binding site motifs in gene promoter regions: does it matter?

The regulatory code for transcriptional response diversity and its relation to genome structural properties in A. thaliana