Lista de obras - Christophe Plomion - Dominio Público Uruguay

"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

artículo científico publicado en 2007

(Not) Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism.

artículo científico publicado en 2010

A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs

artículo científico

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

artículo científico publicado en 2010

A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks

artículo científico publicado en 2015

A micromethod for high throughput RNA extraction in forest trees

artículo científico publicado en 2007

A sample view of the pedunculate oak (Quercus robur) genome from the sequencing of hypomethylated and random genomic libraries

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

artículo científico publicado en 2015

Adaptation of forest trees to climate change

artículo científico publicado en 2011

Adaptive introgression as a driver of local adaptation to climate in European white oaks

artículo científico publicado en 2019

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding.

artículo científico publicado en 2016

Advances in forest tree genomics. Forest Trees Workshop, Plant and Animal Genome XIII Conference, San Diego, CA, USA, January 2005

artículo científico publicado en 2005

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

artículo científico publicado en 2011

Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.

artículo científico publicado en 2012

Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

scientific article published on 02 April 2020

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences

artículo científico publicado en 2004

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

artículo científico publicado en 2010

Candidate genes and QTLs for sugar and organic acid content in peach [ Prunus persica (L.) Batsch].

artículo científico publicado en 2002

Combining proteomic and genetic studies in plants.

artículo científico publicado en 2002

Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs)

artículo científico publicado en 2003

Comparative mapping in the Fagaceae and beyond with EST-SSRs.

artículo científico publicado en 2012

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus

artículo científico publicado en 2011

Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster ait.).

artículo científico publicado en 2000

Copper stress-induced changes in leaf soluble proteome of Cu-sensitive and tolerant Agrostis capillaris L. populations

artículo científico

Correction: Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness

artículo científico publicado en 2017

Cross-species transferability and mapping of genomic and cDNA SSRs in pines

article

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

artículo científico publicado en 2013

Deciphering cork formation in Quercus suber.

artículo científico publicado en 2011

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

artículo científico publicado en 2015

Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR.

artículo científico publicado en 2011

Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L.

artículo científico publicado en 2004

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

artículo científico publicado en 2011

Development of Target Sequence Capture and Estimation of Genomic Relatedness in a Mixed Oak Stand

scientific article published on 13 July 2018

Development of highly-multiplexed SNP arrays in maritime pine for multi-objective genetic applications.

artículo científico publicado en 2011

Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu.

artículo científico publicado en 2014

Distribution of genomic regions differentiating oak species assessed by QTL detection

artículo científico publicado en 2004

Drought differentially affects expression of a PR-10 protein, in needles of maritime pine (Pinus pinaster Ait.) seedlings.

artículo científico publicado en 2001

Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets

artículo científico publicado en 2024

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy.

artículo científico publicado en 1996

Evidence of intense chromosomal shuffling during conifer evolution

artículo científico publicado en 2015

Extensive recent secondary contacts between four European white oak species.

artículo científico publicado en 2017

Fagaceae trees as models to integrate ecology, evolution and genomics.

artículo científico publicado en 2013

Forest ecosystem genomics and adaptation: EVOLTREE conference report

Forest tree genomics: 10 achievements from the past 10 years and future prospects

Functional variability of two lignification genes in Eucalyptus urophylla

artículo científico publicado en 2011

Gaining a global perspective on Fagaceae genomic diversification and adaptation

artículo científico publicado en 2018

Genetic analysis using trans-dominant linked markers in an F2 family.

artículo científico publicado en 1996

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments

artículo científico publicado en 2015

Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine

artículo científico publicado en 2021

Genetic determinism of δ3-carene in maritime pine using RAPD markers

scientific article published on 01 December 1996

Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers

scientific article published on 01 April 2001

Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family

Genetic parameters of growth, straightness and wood chemistry traits in Pinus pinaster

artículo científico publicado en 2011

Genetic resources in maritime pine (Pinus pinaster Aiton): molecular and quantitative measures of genetic variation and differentiation among maternal lineages

artículo científico publicado en 2004

Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants

artículo científico publicado en 2009

Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine.

artículo científico publicado en 2014

Genome-wide evolutionary response of European oaks during the Anthropocene

publication published on 05 January 2022

Genomic Resources Notes Accepted 1 August 2015 - 31 September 2015.

artículo científico publicado en 2016

Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual.

artículo científico publicado en 1995

Genomic landscape of the global oak phylogeny

artículo científico publicado en 2019

Genomic selection in maritime pine

artículo científico publicado en 2015

Genomics of Fagaceae

Genomics of growth traits in forest trees.

artículo científico publicado en 2009

Geographical diversity and genetic relationships among Cedrus species estimated by AFLP

article

Growth and mortality of the oak processionary moth, Thaumetopoea processionea, on two oak species: direct and trait-mediated effects of host and neighbour species

artículo científico publicado en 2020

Hardwood Tree Genomics: Unlocking Woody Plant Biology

article

Heat induced changes in protein expression profiles of Norway spruce (Picea abies) ecotypes from different elevations

artículo científico publicado en 2008

High-Throughput DNA sequencing of ancient wood

artículo científico publicado en 2018

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster).

artículo científico publicado en 2015

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

artículo científico publicado en 2016

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

artículo científico publicado en 2013

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.

artículo científico publicado en 2014

Higher needle anatomic plasticity is related to better water-use efficiency and higher resistance to embolism in fast-growing Pinus pinaster families under water scarcity

scientific article published on 24 September 2020

Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE.

artículo científico publicado en 2009

Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings

artículo científico publicado en 2003

Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots

artículo científico publicado en 2003

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.).

artículo científico publicado en 2016

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

artículo científico publicado en 2010

Inheritance and diversity of simple sequence repeat (SSR) microsatellite markers in various families of Picea abies.

artículo científico publicado en 2003

Integrated genetic mapping of 64 rat microsatellite markers from different sources

artículo científico publicado en 1997

Integrative approach involving RNA-Seq, foliar traits and growth measurements revealed genotype-specific plasticity on Eucalyptus subjected to seasonal water shortage

artículo científico publicado en 2011

Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.).

artículo científico publicado en 2010

LPmerge: an R package for merging genetic maps by linear programming

artículo científico publicado en 2014

Leaf proteome analysis of eight Populus xeuramericana genotypes: genetic variation in drought response and in water-use efficiency involves photosynthesis-related proteins

artículo científico publicado en 2009

Limited genetic variability and phenotypic plasticity detected for cavitation resistance in a Mediterranean pine

artículo científico publicado en 2013

Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness.

artículo científico publicado en 2016

Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins

artículo científico publicado en 2006

Marker trait association for autumn cold acclimation and growth rhythm in <i>pinus sylvestris</i>

artículo científico publicado en 2010

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

article

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

scientific article published on 02 July 2019

Micro-evolutionary patterns of juvenile wood density in a pine species

article

Molecular and phenotypic profiling from the base to the crown in maritime pine wood-forming tissue

artículos científicos

Molecular proxies for climate maladaptation in a long-lived tree (Pinus pinaster Aiton, Pinaceae).

artículo científico publicado en 2014

Nucleotide polymorphisms in a pine ortholog of the Arabidopsis degrading enzyme cellulase KORRIGAN are associated with early growth performance in Pinus pinaster

artículo científico publicado en 2015

Nucleotide variation in genes involved in wood formation in two pine species

scientific article published on 01 July 2005

Oak genome reveals facets of long lifespan

scientific article published on 18 June 2018

Oak genomics is proving its worth

scientific article published on 01 May 2020

Oak genomics takes off … and enters the ecological genomics era.

artículo científico publicado en 2013

Oak genotype and phenolic compounds differently affect the performance of two insect herbivores with contrasting diet breadth

scientific article published on 01 April 2019

Oak symbolism in the light of genomics

artículo científico publicado en 2019

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

artículo científico publicado en 2005

Palaeogenomics of plants: synteny-based modelling of extinct ancestors

artículo científico publicado en 2010

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

article

Performance of genomic prediction within and across generations in maritime pine

artículo científico publicado en 2016

Plasticity of maritime pine (Pinus pinaster) wood-forming tissues during a growing season

artículo científico publicado en 2008

Plasticity of primary and secondary growth dynamics in Eucalyptus hybrids: a quantitative genetics and QTL mapping perspective.

artículo científico publicado en 2013

Polygenic adaptation and negative selection across traits, years and environments in a long‐lived plant species (<i>Pinus pinaster</i> Ait., Pinaceae)

artículo científico publicado en 2022

Protein extraction from woody plants

scientific article published on 01 January 2007

Protein polymorphism between 2 Picea abies populations revealed by 2-dimensional gel electrophoresis and tandem mass spectrometry.

artículo científico publicado en 2008

Proteomic analysis during ontogenesis of secondary xylem in maritime pine

artículo científico publicado en 2014

Proteomic analysis of differentially expressed proteins in hepatocellular carcinoma developed in patients with chronic viral hepatitis C.

artículo científico publicado en 2005

Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field.

artículo científico publicado en 2011

Proteomics research on forest trees, the most recalcitrant and orphan plant species

artículo científico publicado en 2011

Q(ST) < F(ST) As a signature of canalization

artículo científico publicado en 2012

Quantitative Proteomic and Phosphoproteomic Approaches for Deciphering the Signaling Pathway for Tension Wood Formation in Poplar.

artículo científico

Quantitative trait loci mapping for vegetative propagation in pedunculate oak

RNA-Seq reveals genotype-specific molecular responses to water deficit in eucalyptus

artículo científico publicado en 2011

Range-wide phylogeography and gene zones in Pinus pinaster Ait. revealed by chloroplast microsatellite markers.

artículo científico publicado en 2007

Report on the forest trees workshop at the plant and animal genome conference

artículo científico publicado en 2003

Role of waterlogging-responsive genes in shaping interspecific differentiation between two sympatric oak species

artículo científico publicado en 2011

Seasonal variation in transcript accumulation in wood-forming tissues of maritime pine (Pinus pinaster Ait.) with emphasis on a cell wall glycine-rich protein.

artículo científico publicado en 2003

Secretome of the free-living mycelium from the ectomycorrhizal basidiomycete Laccaria bicolor

artículo científico publicado en 2011

Separation and characterization of needle and xylem maritime pine proteins

artículo científico publicado en 1999

Separation and characterization of needle and xylem maritime pine proteins

Single-nucleotide polymorphism discovery and validation in high-density SNP array for genetic analysis in European white oaks

artículo científico publicado en 2015

Soil water stress affects both cuticular wax content and cuticle-related gene expression in young saplings of maritime pine (Pinus pinaster Ait)

artículo científico publicado en 2013

The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

artículo científico publicado en 2020

The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe

scientific article published on 08 January 2021

The genetics of exapted resistance to two exotic pathogens in pedunculate oak

artículo científico publicado en 2019

The genetics of water-use efficiency and its relation to growth in maritime pine

artículo científico publicado en 2014

The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

artículo científico publicado en 2015

The proteome of maritime pine wood forming tissue

artículo científico publicado en 2005

Towards decoding the conifer giga-genome

artículo científico

Trade-offs and Trait Integration in Tree Phenotypes: Consequences for the Sustainable Use of Genetic Resources

artículo científico publicado en 2024

Transcriptional analysis of differentially expressed genes in response to stem inclination in young seedlings of pine.

artículo científico publicado en 2012

Transcriptional changes in two types of pre-mycorrhizal roots and in ectomycorrhizas of oak microcuttings inoculated with Piloderma croceum

artículo científico publicado en 2006

Transcriptional profiling of bud dormancy induction and release in oak by next-generation sequencing

artículo científico publicado en 2013

Transcriptome analysis of bud burst in sessile oak (Quercus petraea).

artículo científico publicado en 2006

Tree species identity and forest composition affect the number of oak processionary moth captured in pheromone traps and the intensity of larval defoliation

scientific article published on 02 March 2020

Uncovering Signatures of DNA Methylation in Ancient Plant Remains From Patterns of Post-mortem DNA Damage

artículo científico publicado en 2020

Uniform selection as a primary force reducing population genetic differentiation of cavitation resistance across a species range

artículo científico publicado en 2011

Water-deficit-responsive proteins in maritime pine.

artículo científico publicado en 1998

Wood formation in trees.

artículo científico publicado en 2001

X-ray computed tomography to decipher the genetic architecture of tree branching traits: oak as a case study

scholarly article by Jialin Song et al published 14 December 2016 in Tree Genetics and Genomes

Lista de obras de Christophe Plomion

"Contrasting patterns of selection at Pinus pinaster Ait. Drought stress candidate genes as revealed by genetic differentiation analyses".

(Not) Keeping the stem straight: a proteomic analysis of maritime pine seedlings undergoing phototropism and gravitropism.

A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs

A fast and cost-effective approach to develop and map EST-SSR markers: oak as a case study.

A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks

A micromethod for high throughput RNA extraction in forest trees

A sample view of the pedunculate oak (Quercus robur) genome from the sequencing of hypomethylated and random genomic libraries

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

Adaptation of forest trees to climate change

Adaptive introgression as a driver of local adaptation to climate in European white oaks

Advances in ecological genomics in forest trees and applications to genetic resources conservation and breeding.

Advances in forest tree genomics. Forest Trees Workshop, Plant and Animal Genome XIII Conference, San Diego, CA, USA, January 2005

Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

Annotated genetic linkage maps of Pinus pinaster Ait. from a Central Spain population using microsatellite and gene based markers.

Author Correction: The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Candidate genes and QTLs for sugar and organic acid content in peach [ Prunus persica (L.) Batsch].

Combining proteomic and genetic studies in plants.

Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs)

Comparative mapping in the Fagaceae and beyond with EST-SSRs.

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus

Compression wood-responsive proteins in developing xylem of maritime pine (Pinus pinaster ait.).

Copper stress-induced changes in leaf soluble proteome of Cu-sensitive and tolerant Agrostis capillaris L. populations

Correction: Linkage and Association Mapping for Two Major Traits Used in the Maritime Pine Breeding Program: Height Growth and Stem Straightness

Cross-species transferability and mapping of genomic and cDNA SSRs in pines

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

Deciphering cork formation in Quercus suber.

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies

Detection of genes involved in bud phenology in sessile oak (Quercus petraea Matt. Liebl) combining digital expression analysis and Q-PCR.

Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Development of Target Sequence Capture and Estimation of Genomic Relatedness in a Mixed Oak Stand

Development of highly-multiplexed SNP arrays in maritime pine for multi-objective genetic applications.

Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu.

Distribution of genomic regions differentiating oak species assessed by QTL detection

Drought differentially affects expression of a PR-10 protein, in needles of maritime pine (Pinus pinaster Ait.) seedlings.

Estimation of contemporary effective population size in plant populations: Limitations of genomic datasets

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy.

Evidence of intense chromosomal shuffling during conifer evolution

Extensive recent secondary contacts between four European white oak species.

Fagaceae trees as models to integrate ecology, evolution and genomics.

Forest ecosystem genomics and adaptation: EVOLTREE conference report

Forest tree genomics: 10 achievements from the past 10 years and future prospects

Functional variability of two lignification genes in Eucalyptus urophylla

Gaining a global perspective on Fagaceae genomic diversification and adaptation

Genetic analysis using trans-dominant linked markers in an F2 family.

Genetic architecture of carbon isotope composition and growth in Eucalyptus across multiple environments

Genetic basis of growth, spring phenology, and susceptibility to biotic stressors in maritime pine

Genetic determinism of δ3-carene in maritime pine using RAPD markers

Genetic diversity within and among Pinus pinaster populations: comparison between AFLP and microsatellite markers

Genetic mapping of EST-derived simple sequence repeats (EST-SSRs) to identify QTL for leaf morphological characters in a Quercus robur full-sib family

Genetic parameters of growth, straightness and wood chemistry traits in Pinus pinaster

Genetic resources in maritime pine (Pinus pinaster Aiton): molecular and quantitative measures of genetic variation and differentiation among maternal lineages

Genetic variation and drought response in two Populus x euramericana genotypes through 2-DE proteomic analysis of leaves from field and glasshouse cultivated plants

Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine.

Genome-wide evolutionary response of European oaks during the Anthropocene

Genomic Resources Notes Accepted 1 August 2015 - 31 September 2015.

Genomic analysis in maritime pine (Pinus pinaster). Comparison of two RAPD maps using selfed and open-pollinated seeds of the same individual.

Genomic landscape of the global oak phylogeny

Genomic selection in maritime pine

Genomics of Fagaceae

Genomics of growth traits in forest trees.

Geographical diversity and genetic relationships among Cedrus species estimated by AFLP

Growth and mortality of the oak processionary moth, Thaumetopoea processionea, on two oak species: direct and trait-mediated effects of host and neighbour species

Hardwood Tree Genomics: Unlocking Woody Plant Biology

Heat induced changes in protein expression profiles of Norway spruce (Picea abies) ecotypes from different elevations

High-Throughput DNA sequencing of ancient wood

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster).

High-density linkage mapping and distribution of segregation distortion regions in the oak genome

High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

High-resolution genetic maps of Eucalyptus improve Eucalyptus grandis genome assembly.

Higher needle anatomic plasticity is related to better water-use efficiency and higher resistance to embolism in fast-growing Pinus pinaster families under water scarcity

Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE.

Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings

Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots

Implication of the suberin pathway in adaptation to waterlogging and hypertrophied lenticels formation in pedunculate oak (Quercus robur L.).

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

Inheritance and diversity of simple sequence repeat (SSR) microsatellite markers in various families of Picea abies.