Lista de obras - Veit Schwämmle - Dominio Público Uruguay

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

scientific article published in 2023

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation

artículo científico publicado en 2019

A community proposal to integrate proteomics activities in ELIXIR

artículo científico publicado en 2017

A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types

artículo científico publicado en 2013

A model of Barchan dunes including lateral shear stress

artículo científico publicado en 2005

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development

artículo científico publicado en 2012

A proteomics approach to the identification of biomarkers for psoriasis utilising keratome biopsy

artículo científico publicado en 2013

A proteomics sample metadata representation for multiomics integration and big data analysis

artículo científico publicado en 2021

A simple and fast method to determine the parameters for fuzzy c–means cluster analysis ⬇️

artículo científico publicado el 29 de septiembre de 2010

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.

artículo científico publicado en 2017

Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome

artículo científico publicado en 2018

Assessment and improvement of statistical tools for comparative proteomics analysis of sparse data sets with few experimental replicates

artículo científico publicado en 2013

Automated workflow composition in mass spectrometry-based proteomics

scientific article published on 01 February 2019

Breeding and solitary wave behavior of dunes

artículo científico publicado en 2005

CoExpresso: assess the quantitative behavior of protein complexes in human cells

article by Morteza H Chalabi et al published 9 January 2019 in BMC Bioinformatics

Community curation of bioinformatics software and data resources

artículo científico publicado en 2019

ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets

artículo científico publicado en 2019

Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.

artículo científico publicado en 2017

Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins.

artículo científico

Consequences of the H theorem from nonlinear Fokker-Planck equations

artículo científico publicado en 2007

Correction: Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

artículo científico publicado en 2021

Depolarization-dependent induction of site-specific changes in sialylation on N-linked glycoproteins in rat nerve terminals

artículo científico publicado en 2020

Different topologies for a herding model of opinion

artículo científico publicado en 2007

Distinct urinary glycoprotein signatures in prostate cancer patients

Dune formation under bimodal winds

artículo científico publicado en 2009

Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle–Down Strategy

scientific article published on 16 August 2018

Geomorphology: solitary wave behaviour of sand dunes.

artículo científico publicado en 2003

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

article

Individual-based model with global competition interaction: fluctuation effects in pattern formation

scientific article published on 26 February 2008

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

artículo científico publicado en 2019

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Isotope labeling-based quantitative proteomics of developing seeds of castor oil seed (Ricinus communis L.).

artículo científico publicado en 2013

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools

scientific article published on 08 January 2020

Large scale analysis of co-existing post-translational modifications in histone tails reveals global fine structure of cross-talk

artículo científico publicado en 2014

Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation

artículo científico publicado en 2018

Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms

scientific article published on 17 January 2020

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones

artículo científico publicado en 2014

Neuronal process structure and growth proteins are targets of heavy PTM regulation during brain development

artículo científico publicado en 2014

Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.

artículo científico publicado en 2016

Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators

artículo científico publicado en 2016

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

artículo científico publicado en 2019

Performance of isobaric and isotopic labeling in quantitative plant proteomics

artículo científico publicado en 2012

Perspectives on automated composition of workflows in the life sciences

artículo científico publicado en 2021

PolySTest: Robust statistical testing of proteomics data with missing values improves detection of biologically relevant features

scientific article published on 18 May 2020

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS.

artículo científico publicado en 2013

ProForma: A Standard Proteoform Notation.

artículo científico publicado en 2018

Proceedings of the EuBIC Winter School 2017.

artículo científico publicado en 2017

Proceedings of the EuBIC Winter School 2019

artículo científico publicado en 2019

Proceedings of the EuBIC developer's meeting 2018

article

Proteomics Software in bio.tools: Coverage and Annotations

artículo científico publicado en 2021

Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

artículo científico publicado en 2021

Quantitative Proteomic Map of the Trypanosomatid Strigomonas culicis: The Biological Contribution of its Endosymbiotic Bacterium

artículo científico publicado en 2019

Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis

artículo científico publicado en 2013

Quantitative behavior of protein complexes in human cells

article published in 2018

Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

artículo científico publicado en 2010

Quantitative proteomic and phosphoproteomic analysis of Trypanosoma cruzi amastigogenesis.

artículo científico publicado en 2014

Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation.

artículo científico publicado en 2010

Selective renal vasoconstriction, exaggerated natriuresis and excretion rates of exosomic proteins in essential hypertension

artículo científico publicado en 2014

Simulations of a mortality plateau in the sexual Penna model for biological aging

artículo científico publicado en 2005

Spatial and temporal effects in protein post-translational modification distributions in the developing mouse brain

artículo científico publicado en 2013

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

artículo científico publicado en 2016

The AIMe registry for artificial intelligence in biomedical research

artículo científico publicado en 2021

The bio.tools registry of software tools and data resources for the life sciences

article

The cultural divide: exponential growth in classical 2D and metabolic equilibrium in 3D environments

artículo científico publicado en 2014

Thermodynamic behavior of a phase transition in a model for sympatric speciation

artículo científico publicado en 2006

Time-resolved quantitative phosphoproteomics: new insights into Angiotensin-(1-7) signaling networks in human endothelial cells.

artículo científico publicado en 2012

Tools and data services registry: a community effort to document bioinformatics resources

artículo científico publicado en 2016

VSClust: Feature-based variance-sensitive clustering of omics data.

artículo científico publicado en 2018

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

artículo científico publicado en 2023

biotoolsSchema: a formalized schema for bioinformatics software description

artículo científico publicado en 2021

Lista de obras de Veit Schwämmle

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

A Lotus japonicus cytoplasmic kinase connects Nod factor perception by the NFR5 LysM receptor to nodulation

A community proposal to integrate proteomics activities in ELIXIR

A computational model for histone mark propagation reproduces the distribution of heterochromatin in different human cell types

A model of Barchan dunes including lateral shear stress

A novel method for the simultaneous enrichment, identification, and quantification of phosphopeptides and sialylated glycopeptides applied to a temporal profile of mouse brain development

A proteomics approach to the identification of biomarkers for psoriasis utilising keratome biopsy

A proteomics sample metadata representation for multiomics integration and big data analysis

A simple and fast method to determine the parameters for fuzzy c–means cluster analysis ⬇️

Accumulation of histone variant H3.3 with age is associated with profound changes in the histone methylation landscape.

Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome

Assessment and improvement of statistical tools for comparative proteomics analysis of sparse data sets with few experimental replicates

Automated workflow composition in mass spectrometry-based proteomics

Breeding and solitary wave behavior of dunes

CoExpresso: assess the quantitative behavior of protein complexes in human cells

Community curation of bioinformatics software and data resources

ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets

Computational and Statistical Methods for High-Throughput Mass Spectrometry-Based PTM Analysis.

Computational and statistical methods for high-throughput analysis of post-translational modifications of proteins.

Consequences of the H theorem from nonlinear Fokker-Planck equations

Correction: Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

Depolarization-dependent induction of site-specific changes in sialylation on N-linked glycoproteins in rat nerve terminals

Different topologies for a herding model of opinion

Distinct urinary glycoprotein signatures in prostate cancer patients

Dune formation under bimodal winds

Extensive Characterization of Heavily Modified Histone Tails by 193 nm Ultraviolet Photodissociation Mass Spectrometry via a Middle–Down Strategy

Geomorphology: solitary wave behaviour of sand dunes.

High-performance hybrid Orbitrap mass spectrometers for quantitative proteome analysis: Observations and implications

Individual-based model with global competition interaction: fluctuation effects in pattern formation

IsoProt: A Complete and Reproducible Workflow To Analyze iTRAQ/TMT Experiments

IsoProt: A complete and reproducible workflow to analyse iTRAQ/TMT experiments

Isotope labeling-based quantitative proteomics of developing seeds of castor oil seed (Ricinus communis L.).

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools

Large scale analysis of co-existing post-translational modifications in histone tails reveals global fine structure of cross-talk

Maximizing Sequence Coverage in Top-Down Proteomics By Automated Multimodal Gas-Phase Protein Fragmentation

Middle-Down Proteomic Analyses with Ion Mobility Separations of Endogenous Isomeric Proteoforms

Middle-down hybrid chromatography/tandem mass spectrometry workflow for characterization of combinatorial post-translational modifications in histones

Neuronal process structure and growth proteins are targets of heavy PTM regulation during brain development

Neutrophil proteomic analysis reveals the participation of antioxidant enzymes, motility and ribosomal proteins in the prevention of ischemic effects by preconditioning.

Nuclear phosphoproteome analysis of 3T3-L1 preadipocyte differentiation reveals system-wide phosphorylation of transcriptional regulators

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

Performance of isobaric and isotopic labeling in quantitative plant proteomics

Perspectives on automated composition of workflows in the life sciences

PolySTest: Robust statistical testing of proteomics data with missing values improves detection of biologically relevant features

Precision mapping of coexisting modifications in histone H3 tails from embryonic stem cells by ETD-MS/MS.

ProForma: A Standard Proteoform Notation.

Proceedings of the EuBIC Winter School 2017.

Proceedings of the EuBIC Winter School 2019

Proceedings of the EuBIC developer's meeting 2018

Proteomics Software in bio.tools: Coverage and Annotations

Quantifying Online News Media Coverage of the COVID-19 Pandemic: Text Mining Study and Resource

Quantitative Proteomic Map of the Trypanosomatid Strigomonas culicis: The Biological Contribution of its Endosymbiotic Bacterium

Quantitative assessment of in-solution digestion efficiency identifies optimal protocols for unbiased protein analysis

Quantitative behavior of protein complexes in human cells

Quantitative proteome analysis of Streptomyces coelicolor Nonsporulating liquid cultures demonstrates a complex differentiation process comparable to that occurring in sporulating solid cultures.

Quantitative proteomic and phosphoproteomic analysis of Trypanosoma cruzi amastigogenesis.

Quantitative proteomics analysis of Streptomyces coelicolor development demonstrates that onset of secondary metabolism coincides with hypha differentiation.

Selective renal vasoconstriction, exaggerated natriuresis and excretion rates of exosomic proteins in essential hypertension

Simulations of a mortality plateau in the sexual Penna model for biological aging

Spatial and temporal effects in protein post-translational modification distributions in the developing mouse brain

Systems Level Analysis of Histone H3 Post-translational Modifications (PTMs) Reveals Features of PTM Crosstalk in Chromatin Regulation

The AIMe registry for artificial intelligence in biomedical research

The bio.tools registry of software tools and data resources for the life sciences

The cultural divide: exponential growth in classical 2D and metabolic equilibrium in 3D environments

Thermodynamic behavior of a phase transition in a model for sympatric speciation

Time-resolved quantitative phosphoproteomics: new insights into Angiotensin-(1-7) signaling networks in human endothelial cells.

Tools and data services registry: a community effort to document bioinformatics resources

VSClust: Feature-based variance-sensitive clustering of omics data.

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

biotoolsSchema: a formalized schema for bioinformatics software description