Lista de obras - Paul Bertone - Dominio Público Uruguay

A high-content small molecule screen identifies sensitivity of glioblastoma stem cells to inhibition of polo-like kinase 1

artículo científico publicado en 2013

Advances in functional protein microarray technology

artículo científico publicado en 2005

An integrated approach for finding overlooked genes in yeast.

artículo científico publicado en 2002

Analysis of yeast protein kinases using protein chips.

artículo científico publicado en 2000

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery

artículo científico publicado en 2005

Assessment of transcript reconstruction methods for RNA-seq

artículo científico publicado en 2013

CREB binds to multiple loci on human chromosome 22.

artículo científico publicado en 2004

Citrullination regulates pluripotency and histone H1 binding to chromatin

scientific journal article

Comparative analysis of neutrophil and monocyte epigenomes

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

artículo científico publicado en 2002

Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome

artículo científico publicado en 2012

Computational Methods and Bioinformatic Tools

Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research

Design optimization methods for genomic DNA tiling arrays

artículo científico publicado en 2005

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival

artículo científico publicado en 2012

Distinct Molecular Trajectories Converge to Induce Naive Pluripotency

artículo científico publicado en 2019

Distribution of NF-kappaB-binding sites across human chromosome 22

artículo científico publicado en 2003

Elevated FOXG1 and SOX2 in glioblastoma enforces neural stem cell identity through transcriptional control of cell cycle and epigenetic regulators.

artículo científico publicado en 2017

EphrinB2 drives perivascular invasion and proliferation of glioblastoma stem-like cells

artículo científico publicado en 2016

Epigenetic resetting of human pluripotency.

artículo científico publicado en 2017

Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome

artículo científico publicado en 2011

ExpressYourself: A modular platform for processing and visualizing microarray data

artículo científico publicado en 2003

Fast optimal genome tiling with applications to microarray design and homology search

artículo científico publicado en 2004

Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency

artículo científico publicado en 2018

GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing ⬇️

artículo científico publicado en 2002

Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila

artículo científico publicado en 2008

Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors

scientific journal article

Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest

artículo científico publicado en 2015

Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion

artículo científico publicado en 2021

Global analysis of protein activities using proteome chips

artículo científico publicado en 2001

Global changes in STAT target selection and transcription regulation upon interferon treatments

artículo científico publicado en 2005

Global identification of human transcribed sequences with genome tiling arrays

artículo científico publicado en 2004

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R.

artículo científico publicado en 2009

Identification of pseudogenes in the Drosophila melanogaster genome

artículo científico publicado en 2003

Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.

artículo científico publicado en 2013

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblast

artículo científico publicado en 2018

Integrative data mining: the new direction in bioinformatics.

artículo científico publicado en 2001

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

artículo científico publicado en 2005

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis

artículo científico publicado en 2015

Mapping organelle proteins and protein complexes in Drosophila melanogaster

artículo científico publicado en 2009

Mbd3 and deterministic reprogramming

Modeling of C/EBPα Mutant Acute Myeloid Leukemia Reveals a Common Expression Signature of Committed Myeloid Leukemia-Initiating Cells

article

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

artículo científico publicado en 2002

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

artículo científico publicado en 2005

Myc Depletion Induces a Pluripotent Dormant State Mimicking Diapause

artículo científico publicado en 2016

Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass

artículo científico publicado en 2016

NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment

artículo científico publicado en 2012

NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression

artículo científico publicado en 2011

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

artículo científico publicado en 2015

PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.

artículo científico publicado en 2010

Prospects and challenges in proteomics.

artículo científico publicado en 2005

Resetting transcription factor control circuitry toward ground-state pluripotency in human

artículo científico publicado en 2014

SMIM1 underlies the Vel blood group and influences red blood cell traits

artículo científico publicado en 2013

SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes

scientific article published on 01 May 2002

SPINE 2: a system for collaborative structural proteomics within a federated database framework

artículo científico publicado en 2003

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics

artículo científico publicado en 2001

Sall4 controls differentiation of pluripotent cells independently of the Nucleosome Remodelling and Deacetylation (NuRD) complex

artículo científico publicado en 2016

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

article

Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

article

Structural genomics: a new era for pharmaceutical research

artículo científico publicado en 2002

Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression

artículo científico publicado en 2010

Systematic evaluation of spliced alignment programs for RNA-seq data

artículo científico publicado en 2013

Target hub proteins serve as master regulators of development in yeast

artículo científico publicado en 2006

The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression.

artículo científico publicado en 2018

The Nucleosome Remodelling and Deacetylation complex restricts Mediator access to enhancers to control transcription

The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification

artículo científico publicado en 2014

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

artículo científico publicado en 2013

The transcriptional activity of human Chromosome 22

artículo científico publicado en 2003

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA

artículo científico publicado en 2013

Tracking the embryonic stem cell transition from ground state pluripotency

artículo científico publicado en 2017

Transcriptional diversity during lineage commitment of human blood progenitors

artículo científico publicado en 2014

Transcriptional regulatory networks in bacteria: from input signals to output responses.

artículo científico publicado en 2006

Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner

artículo científico publicado en 2013

Lista de obras de Paul Bertone

A high-content small molecule screen identifies sensitivity of glioblastoma stem cells to inhibition of polo-like kinase 1

Advances in functional protein microarray technology

An integrated approach for finding overlooked genes in yeast.

Analysis of yeast protein kinases using protein chips.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery

Assessment of transcript reconstruction methods for RNA-seq

CREB binds to multiple loci on human chromosome 22.

Citrullination regulates pluripotency and histone H1 binding to chromatin

Comparative analysis of neutrophil and monocyte epigenomes

Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae

Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome

Computational Methods and Bioinformatic Tools

Design Issues in Implementing a Portable Sample Tracking and Analysis Research Support (STARS) System for PCR Based Microarray Research

Design optimization methods for genomic DNA tiling arrays

Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival

Distinct Molecular Trajectories Converge to Induce Naive Pluripotency

Distribution of NF-kappaB-binding sites across human chromosome 22

Elevated FOXG1 and SOX2 in glioblastoma enforces neural stem cell identity through transcriptional control of cell cycle and epigenetic regulators.

EphrinB2 drives perivascular invasion and proliferation of glioblastoma stem-like cells

Epigenetic resetting of human pluripotency.

Exome sequencing identifies NBEAL2 as the causative gene for gray platelet syndrome

ExpressYourself: A modular platform for processing and visualizing microarray data

Fast optimal genome tiling with applications to microarray design and homology search

Gain of CTCF-Anchored Chromatin Loops Marks the Exit from Naive Pluripotency

GeneCensus: genome comparisons in terms of metabolic pathway activity and protein family sharing ⬇️

Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila

Genome-wide characterization of Foxa2 targets reveals upregulation of floor plate genes and repression of ventrolateral genes in midbrain dopaminergic progenitors

Glioblastoma Stem Cells Respond to Differentiation Cues but Fail to Undergo Commitment and Terminal Cell-Cycle Arrest

Glioblastomas acquire myeloid-affiliated transcriptional programs via epigenetic immunoediting to elicit immune evasion

Global analysis of protein activities using proteome chips

Global changes in STAT target selection and transcription regulation upon interferon treatments

Global identification of human transcribed sequences with genome tiling arrays

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R.

Identification of pseudogenes in the Drosophila melanogaster genome

Identification of the missing pluripotency mediator downstream of leukaemia inhibitory factor.

Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblast

Integrative data mining: the new direction in bioinformatics.

Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

Lineage-Specific Profiling Delineates the Emergence and Progression of Naive Pluripotency in Mammalian Embryogenesis

Mapping organelle proteins and protein complexes in Drosophila melanogaster

Mbd3 and deterministic reprogramming

Modeling of C/EBPα Mutant Acute Myeloid Leukemia Reveals a Common Expression Signature of Committed Myeloid Leukemia-Initiating Cells

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

Myc Depletion Induces a Pluripotent Dormant State Mimicking Diapause

Naive Pluripotent Stem Cells Derived Directly from Isolated Cells of the Human Inner Cell Mass

NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment

NuRD-mediated deacetylation of H3K27 facilitates recruitment of Polycomb Repressive Complex 2 to direct gene repression

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program

PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.

Prospects and challenges in proteomics.

Resetting transcription factor control circuitry toward ground-state pluripotency in human

SMIM1 underlies the Vel blood group and influences red blood cell traits

SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes

SPINE 2: a system for collaborative structural proteomics within a federated database framework

SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics

Sall4 controls differentiation of pluripotent cells independently of the Nucleosome Remodelling and Deacetylation (NuRD) complex

Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

Single-cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development

Structural genomics: a new era for pharmaceutical research

Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression

Systematic evaluation of spliced alignment programs for RNA-seq data

Target hub proteins serve as master regulators of development in yeast

The Nucleosome Remodeling and Deacetylation Complex Modulates Chromatin Structure at Sites of Active Transcription to Fine-Tune Gene Expression.

The Nucleosome Remodelling and Deacetylation complex restricts Mediator access to enhancers to control transcription

The ability of inner-cell-mass cells to self-renew as embryonic stem cells is acquired following epiblast specification

The non-coding snRNA 7SK controls transcriptional termination, poising, and bidirectionality in embryonic stem cells

The transcriptional activity of human Chromosome 22

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA

Tracking the embryonic stem cell transition from ground state pluripotency

Transcriptional diversity during lineage commitment of human blood progenitors

Transcriptional regulatory networks in bacteria: from input signals to output responses.

Widespread resetting of DNA methylation in glioblastoma-initiating cells suppresses malignant cellular behavior in a lineage-dependent manner