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Lista de obras de Ana Tereza R Vasconcelos

A System for Automated Bacterial (genome) Integrated Annotation--SABIA

artículo científico publicado en 2004

A cellular automata-based mathematical model for thymocyte development

artículo científico publicado en 2009

A comparative in silico linear B-cell epitope prediction and characterization for South American and African Trypanosoma vivax strains.

artículo científico publicado en 2018

A new set of bioinformatics tools for genome projects

artículo científico publicado en 2004

A potential source for cellulolytic enzyme discovery and environmental aspects revealed through metagenomics of Brazilian mangroves

artículo científico publicado en 2013

A re-annotation of the Anopheles darlingi mobilome

artículo científico publicado en 2019

AGUIA: autonomous graphical user interface assembly for clinical trials semantic data services

artículo científico publicado en 2010

Abrolhos bank reef health evaluated by means of water quality, microbial diversity, benthic cover, and fish biomass data

artículo científico publicado en 2012

Adaptive processes of Staphylococcus aureus isolates during the progression from acute to chronic bone and joint infections in patients

artículo científico publicado en 2016

An integrative, multi-omics approach towards the prioritization of Klebsiella pneumoniae drug targets.

artículo científico publicado en 2018

Analysis of composition-based metagenomic classification

artículo científico publicado en 2012

Analysis of isolates from Bangladesh highlights multiple ways to carry resistance genes in Salmonella Typhi

artículo científico publicado en 2019

Asexual propagation of a virulent clone complex in a human and feline outbreak of sporotrichosis.

artículo científico publicado en 2014

AtlasT4SS: a curated database for type IV secretion systems

artículo científico publicado en 2012

Automated smoother for the numerical decoupling of dynamics models

artículo científico publicado en 2007

BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies

artículo científico publicado en 2015

BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments

artículo científico publicado en 2018

Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont-harboring trypanosomatid

artículo científico publicado en 2015

Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation.

artículo científico publicado en 2017

Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses

artículo científico publicado en 2013

CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens

artículo científico publicado en 2008

Cestode strobilation: prediction of developmental genes and pathways

artículo científico publicado en 2020

Characterisation of plasmid-mediated rmtB-1 in Enterobacteriaceae clinical isolates from São Paulo, Brazil

article

Characterization of BKC-1 class A carbapenemase from Klebsiella pneumoniae clinical isolates in Brazil.

artículo científico publicado en 2015

Chromosomal copy number variation reveals differential levels of genomic plasticity in distinct Trypanosoma cruzi strains

artículo científico publicado en 2015

Closure of rRNA related gaps in the Chromobacterium violaceum genome with the PCR-assisted contig extension (PACE) protocol

scientific article published on 31 March 2004

Combination of measures distinguishes pre-miRNAs from other stem-loops in the genome of the newly sequenced Anopheles darlingi

artículo científico publicado en 2010

Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment

artículo científico publicado en 2016

Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria

artículo científico publicado en 2011

Community-acquired methicillin-resistant from ST1 lineage harboring a new SCC IV subtype (SCC IVm) containing the gene

artículo científico publicado en 2018

Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil

artículo científico publicado en 2018

Comparative Studies of Transcriptional Regulation Mechanisms in a Group of Eight Gamma-proteobacterial Genomes

scientific article published on 04 October 2005

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

artículo científico publicado en 2014

Comparative genome analysis of entomopathogenic fungi reveals a complex set of secreted proteins

artículo científico publicado en 2014

Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteria provides new insights into magnetite and greigite magnetosome genes required for magnetotaxis

artículo científico publicado en 2013

Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean

artículo científico publicado en 2014

Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis.

artículo científico publicado en 2014

Comparative metagenome of a stream impacted by the urbanization phenomenon.

artículo científico publicado en 2016

Comparative mitogenomic analyses of Amazona parrots and Psittaciformes

scientific article published on 01 July 2018

Complete Genome Sequence of Strain SS-5, a Magnetotactic Gammaproteobacterium Isolated from the Salton Sea, a Shallow, Saline, Endorheic Rift Lake Located on the San Andreas Fault in California

artículo científico publicado en 2021

Complete Genome Sequence of a Variant of the Methicillin-Resistant Staphylococcus aureus ST239 Lineage, Strain BMB9393, Displaying Superior Ability To Accumulate ica-Independent Biofilm

artículo científico publicado en 2013

Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor

artículo científico publicado en 2016

Complete genome sequence of Burkholderia phenoliruptrix BR3459a (CLA1), a heat-tolerant, nitrogen-fixing symbiont of Mimosa flocculosa ⬇️

artículo científico publicado el 1 de diciembre de 2012

Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil

artículo científico publicado en 2016

Conservation of key members in the course of the evolution of the insulin signaling pathway

scientific article published on 20 June 2008

Correlation between female sex, IL28B genotype, and the clinical severity of bronchiolitis in pediatric patients

artículo científico publicado en 2019

Culture-independent characterization of novel psychrophilic magnetotactic cocci from Antarctic marine sediments

artículo científico publicado en 2016

DASMiner: discovering and integrating data from DAS sources

artículo científico publicado en 2009

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers

artículo científico publicado en 2014

Deciphering unusual uncultured magnetotactic multicellular prokaryotes through genomics

artículo científico publicado en 2013

Dense sampling of bird diversity increases power of comparative genomics

artículo científico publicado en 2020

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual

artículo científico publicado en 2011

Diversity in antifungal activity of strains of Chromobacterium violaceum from the Brazilian Amazon

artículo científico publicado en 2008

Draft Genome Sequence of Mycobacterium tuberculosis Clinical Strain G-12-005.

artículo científico publicado en 2014

Draft Genome Sequence of Tritrichomonas foetus Strain K

artículo científico publicado en 2017

Draft Genome Sequence of the D-Xylose-Fermenting Yeast Spathaspora arborariae UFMG-HM19.1AT.

artículo científico publicado en 2014

Draft Genome Sequence of the Fungus (Strain LaBioMMi 136), a Plant Endophyte from

article

Draft Genome Sequences of Six Actinobacillus pleuropneumoniae Serotype 8 Brazilian Clinical Isolates: Insight into New Applications

artículo científico publicado en 2015

Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.

artículo científico publicado en 2011

Empirical assessment of sequencing errors for high throughput pyrosequencing data.

artículo científico publicado en 2013

Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers.

artículo científico publicado en 2013

Erratum to: Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment

artículo científico publicado en 2016

Erratum to: Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction

artículo científico publicado en 2017

Evolution and epidemic spread of SARS-CoV-2 in Brazil

preprint publicado en 2020

Exploration of the core metabolism of symbiotic bacteria

artículo científico publicado en 2012

Exploratory Investigation of Bacteroides fragilis Transcriptional Response during In vitro Exposure to Subinhibitory Concentration of Metronidazole

scientific article published on 20 September 2016

Exploratory analysis of the copy number alterations in glioblastoma multiforme

artículo científico publicado en 2008

Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).

artículo científico publicado en 2017

From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters

artículo científico publicado en 2009

Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

artículo científico publicado en 2022

Genes involved in cell division in mycoplasmas

article

Genetic Characterization of Plasmid-Borne bla OXA-58 in Distinct Acinetobacter Species

scientific article published on 16 October 2019

Genetic characterization of Chromobacterium isolates from black water environments in the Brazilian Amazon

artículo científico publicado en 2005

Genome Sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T, Isolated from a Root Nodule of Neonotonia wightii

artículo científico publicado en 2015

Genome Sequence of Bradyrhizobium viridifuturi Strain SEMIA 690T, a Nitrogen-Fixing Symbiont of Centrosema pubescens

artículo científico publicado en 2015

Genome and plasmid context of two rmtG-carrying Enterobacter hormaechei isolated from urinary tract infections in Brazil

scientific article published on 03 July 2019

Genome of Rhizobium leucaenae strains CFN 299(T) and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions

artículo científico publicado en 2016

Genome of the avirulent human-infective trypanosome--Trypanosoma rangeli

artículo científico publicado en 2014

Genome-Wide Analysis of Secondary Metabolite Gene Clusters in Ophiostoma ulmi and Ophiostoma novo-ulmi Reveals a Fujikurin-Like Gene Cluster with a Putative Role in Infection

artículo científico publicado en 2017

Genome-wide DNA methylation analysis of Metarhizium anisopliae during tick mimicked infection condition

artículo científico publicado en 2019

Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax.

artículo científico publicado en 2017

Genome-wide diversity of Zika virus: Exploring spatio-temporal dynamics to guide a new nomenclature proposal

artículo científico publicado en 2022

Genomic analyses and transcriptional profiles of the glycoside hydrolase family 18 genes of the entomopathogenic fungus Metarhizium anisopliae

artículo científico publicado en 2014

Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales

artículo científico publicado en 2010

Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).

artículo científico publicado en 2012

Genomic insights into the versatility of the plant growth-promoting bacterium Azospirillum amazonense

artículo científico publicado en 2011

Genomic panorama of Bradyrhizobium japonicum CPAC 15, a commercial inoculant strain largely established in Brazilian soils and belonging to the same serogroup as USDA 123

article

Genomic taxonomy of Vibrios

artículo científico publicado en 2009

Gut bacterial communities in the giant land snail Achatina fulica and their modification by sugarcane-based diet

artículo científico publicado en 2012

Heterologous induction of a predicted promoter sequence for paraquat-inducible genes of Chromobacterium violaceum in response to paraquat compound

article

High-quality draft genome sequence resources of eight Xylella fastidiosa strains isolated from citrus, coffee, plum and hibiscus in South America

artículo científico publicado en 2020

ITGA6 gene silencing by RNA interference modulates the expression of a large number of cell migration-related genes in human thymic epithelial cells

artículo científico publicado en 2013

Identification of non-coding RNAs in environmental vibrios

artículo científico publicado en 2010

Identification of yebG as a DNA damage-inducible Escherichia coli gene

article

Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria.

artículo científico publicado en 2008

Impact of long-term cropping of glyphosate-resistant transgenic soybean [Glycine max (L.) Merr.] on soil microbiome

artículo científico publicado en 2016

Insights on the virulence of swine respiratory tract mycoplasmas through genome-scale metabolic modeling

artículo científico publicado en 2016

Intraclonal Genome Stability of the Metallo-β-lactamase SPM-1-producing Pseudomonas aeruginosa ST277, an Endemic Clone Disseminated in Brazilian Hospitals.

artículo científico publicado en 2016

Isolation of Infective Zika Virus from Urine and Saliva of Patients in Brazil

artículo científico publicado en 2016

Isolation, cultivation and genomic analysis of magnetosome biomineralization genes of a new genus of South-seeking magnetotactic cocci within the Alphaproteobacteria

artículo científico publicado en 2014

Laminin database: a tool to retrieve high-throughput and curated data for studies on laminins

artículo científico publicado en 2011

Laminin-database v.2.0: an update on laminins in health and neuromuscular disorders

artículo científico publicado en 2013

Local Diversification of Methicillin- Resistant ST239 in South America After Its Rapid Worldwide Dissemination

artículo científico publicado en 2019

MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies

artículo científico publicado en 2005

Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation.

artículo científico publicado en 2018

Metagenomic analysis of sediments under seaports influence in the Equatorial Atlantic Ocean

artículo científico publicado en 2016

Metagenomic analysis of the microbiota from the crop of an invasive snail reveals a rich reservoir of novel genes ⬇️

artículo científico publicado en 2012

Metagenomic analysis reveals microbial functional redundancies and specificities in a soil under different tillage and crop-management regimes

article

Microbiome overview in swine lungs

artículo científico publicado en 2017

Mitochondrial respiration and genomic analysis provide insight into the influence of the symbiotic bacterium on host trypanosomatid oxygen consumption.

artículo científico publicado en 2014

Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome

artículo científico publicado en 2020

Monophyletic origin of magnetotaxis and the first magnetosomes.

artículo científico publicado en 2013

Mycoplasma non-coding RNA: identification of small RNAs and targets

artículo científico publicado en 2016

New insights on the Golgi complex of Tritrichomonas foetus

artículo científico publicado en 2013

New insights on the biology of swine respiratory tract mycoplasmas from a comparative genome analysis

artículo científico publicado en 2013

Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81.

artículo científico publicado en 2009

Origins of the Xylella fastidiosa prophage-like regions and their impact in genome differentiation

artículo científico publicado en 2008

Outstanding impact of soil tillage on the abundance of soil hydrolases revealed by a metagenomic approach

artículo científico publicado en 2018

Parameter optimization in S-system models

artículo científico publicado en 2008

Parrot Genomes and the Evolution of Heightened Longevity and Cognition

artículo científico publicado en 2018

Peroxide sensing and signaling in the Sporothrix schenckii complex: an in silico analysis to uncover putative mechanisms regulating the Hog1 and AP-1 like signaling pathways

artículo científico publicado en 2014

Phylodynamic analysis of SARS-CoV-2 spread in Rio de Janeiro, Brazil, highlights how metropolitan areas act as dispersal hubs for new variants

artículo científico publicado en 2022

Ploidy Determination in the Pathogenic Fungus spp

artículo científico publicado en 2019

Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family

artículo científico publicado en 2013

Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps

artículo científico publicado en 2008

Prediction of TF target sites based on atomistic models of protein-DNA complexes

artículo científico publicado en 2008

Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil

artículo científico publicado en 2012

Reply to "Mobilization of blaBKC-1 by ISKpn23?".

artículo científico publicado en 2016

Restriction-modification systems in Mycoplasma spp

Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

artículo científico publicado en 2016

Shifts in taxonomic and functional microbial diversity with agriculture: How fragile is the Brazilian Cerrado?

artículo científico publicado en 2016

Short interrupted palindromes on the extragenic DNA of Escherichia coli K-12, Haemophilus influenzae and Neisseria meningitidis

artículo científico publicado en 2000

Small interference ITGA6 gene targeting in the human thymic epithelium differentially regulates the expression of immunological synapse-related genes

artículo científico publicado en 2017

Soil metagenomics reveals differences under conventional and no-tillage with crop rotation or succession

artículo científico publicado en 2013

Strict network analysis of evolutionary conserved and brain-expressed genes reveals new putative candidates implicated in Intellectual Disability and in Global Development Delay

scientific article published on 11 September 2020

Structural analysis of a novel N-carbamoyl-d-amino acid amidohydrolase from a Brazilian Bradyrhizobium japonicum strain: In silico insights by molecular modelling, docking and molecular dynamics

Structural descriptor database: a new tool for sequence-based functional site prediction

artículo científico publicado en 2008

Structure-based functional inference of hypothetical proteins from Mycoplasma hyopneumoniae

artículo científico publicado en 2011

Superoxide radical-generating compounds activate a predicted promoter site for paraquat-inducible genes of the Chromobacterium violaceum bacterium in a dose-dependent manner.

artículo científico publicado en 2015

Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae

artículo científico publicado en 2005

Systematic detection of putative tumor suppressor genes through the combined use of exome and transcriptome sequencing

artículo científico publicado en 2010

TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes

artículo científico publicado en 2005

Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis

artículo científico publicado en 2012

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil

artículo científico publicado en 2014

The Importance of Glycerophospholipid Production to the Mutualist Symbiosis of Trypanosomatids

artículo científico

The assembly and annotation of the complete Rufous-bellied thrush mitochondrial genome

artículo científico publicado en 2015

The changing epidemiology of Acinetobacter spp. producing OXA carbapenemases causing bloodstream infections in Brazil: a BrasNet report.

artículo científico publicado en 2015

The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes

artículo científico publicado en 2014

The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability

artículo científico publicado en 2003

The complete mitochondrial genome of Crassostrea gasar (Bivalvia: Ostreidae).

artículo científico publicado en 2016

The costa of trichomonads: A complex macromolecular cytoskeleton structure made of uncommon proteins

artículo científico

The genome of Anopheles darlingi, the main neotropical malaria vector

artículo científico publicado en 2013

The polymyxin B-induced transcriptomic response of a clinical, multidrug-resistant Klebsiella pneumoniae involves multiple regulatory elements and intracellular targets

artículo científico publicado en 2016

The transposable element-rich genome of the cereal pest Sitophilus oryzae

artículo científico

Tolerance to stress and environmental adaptability of Chromobacterium violaceum.

artículo científico publicado en 2004

Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes

artículo científico publicado en 2006

Transcriptional and proteomic responses to carbon starvation in Paracoccidioides

artículo científico publicado en 2014

Trypanosoma cruzi Clone Dm28c Draft Genome Sequence

artículo científico publicado en 2014

Unravelling the transcriptome profile of the Swine respiratory tract mycoplasmas

artículo científico publicado en 2014

Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome

artículo científico publicado en 2021

Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains

artículo científico publicado en 2012

Zika virus disrupts gene expression in human myoblasts and myotubes: Relationship with susceptibility to infection

scientific article published in 2022

Zika virus targets the human thymic epithelium

artículo científico publicado en 2020

miRNA Genetic Variants Alter Their Secondary Structure and Expression in Patients With RASopathies Syndromes

scientific article published on 13 November 2019

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