Lista de obras - Valérie Gabelica - Dominio Público Uruguay

A pilgrim's guide to G-quadruplex nucleic acid folding

artículo científico publicado en 2014

A short C-rich PNA fragment capable to form novel G-quadruplex-PNA complexes

artículo científico publicado en 2008

A simple method to determine electrospray response factors of noncovalent complexes

artículo científico publicado en 2009

Advantages and drawbacks of nanospray for studying noncovalent protein-DNA complexes by mass spectrometry

artículo científico publicado en 2002

Ammonium Ion Binding to DNA G-Quadruplexes: Do Electrospray Mass Spectra Faithfully Reflect the Solution-Phase Species? ⬇️

artículo científico publicado el 7 de noviembre de 2012

Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound

scientific article published on 12 October 2018

Anatomy of an Oligourea Six-Helix Bundle

artículo científico publicado en 2016

Ascididemin and meridine stabilise G-quadruplexes and inhibit telomerase in vitro.

artículo científico publicado en 2005

Assembly of Palladium(II) and Platinum(II) Metallo-Rectangles with a Guanosine-Substituted Terpyridine and Study of Their Interactions with Quadruplex DNA

artículo científico publicado en 2014

Assembly of chemically modified G-rich sequences into tetramolecular DNA G-quadruplexes and higher order structures.

artículo científico

Base-dependent electron photodetachment from negatively charged DNA strands upon 260-nm laser irradiation.

artículo científico publicado en 2007

Calibration of ion effective temperatures achieved by resonant activation in a quadrupole ion trap

artículo científico publicado en 2003

Cation involvement in telomestatin binding to g-quadruplex DNA.

artículo científico publicado en 2010

Centromeric Alpha-Satellite DNA Adopts Dimeric i-Motif Structures Capped by AT Hoogsteen Base Pairs

artículo científico publicado en 2015

Collision Cross Sections of Phosphoric Acid Cluster Anions in Helium Measured by Drift Tube Ion Mobility Mass Spectrometry

artículo científico publicado en 2020

Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry.

artículo científico publicado en 2017

Compaction of RNA Hairpins and Their Kissing Complexes in Native Electrospray Mass Spectrometry

article published in 2020

Compaction of RNA Hairpins and their Kissing Complexes in Native Electrospray Mass Spectrometry

artículo científico publicado en 2020

Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes

artículo científico publicado en 2001

Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: evidence for a multistep dissociation mechanism.

artículo científico publicado en 2002

Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

artículo científico publicado en 2019

Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology

artículo científico publicado en 2020

Controlling internal degrees: general discussion

artículo científico publicado en 2019

Cooperative 2:1 binding of a bisphenothiazine to duplex DNA.

artículo científico publicado en 2008

DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions

artículo científico publicado en 2021

DNA and RNA telomeric G-quadruplexes: what topology features can be inferred from ion mobility mass spectrometry?

scientific article published on 17 September 2019

DNA-based nanostructures: The effect of the base sequence on octamer formation from d(XGGYGGT) tetramolecular G-quadruplexes

artículo científico publicado en 2013

Design, Synthesis, and Evaluation of 2,9-Bis[(substituted-aminomethyl)phenyl]-1,10-phenanthroline Derivatives as G-Quadruplex Ligands.

artículo científico publicado en 2016

Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry

artículo científico publicado en 2002

Dissociation Pathways of Benzylpyridinium "Thermometer" Ions Depend on the Activation Regime: An IRMPD Spectroscopy Study

artículo científico publicado en 2014

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats

artículo científico publicado en 2014

Drift Tube Ion Mobility: How to Reconstruct Collision Cross Section Distributions from Arrival Time Distributions?

artículo científico publicado en 2017

Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry

artículo científico publicado en 2020

Effective Temperature of Ions in Traveling Wave Ion Mobility Spectrometry

article

Electron detachment dissociation (EDD) pathways in oligonucleotides

Electron photodetachment dissociation of DNA anions with covalently or noncovalently bound chromophores

artículo científico publicado en 2007

Electron photodetachment dissociation of DNA polyanions in a quadrupole ion trap mass spectrometer

artículo científico publicado en 2006

Electronic Spectroscopy of Isolated DNA Polyanions

Electronic spectroscopy of isolated DNA polyanions

scientific article published on 01 July 2019

Electrospray Mass Spectrometry of Telomeric RNA (TERRA) Reveals the Formation of Stable Multimeric G-Quadruplex Structures

artículo científico publicado en 2010

Electrospray mass spectrometry to study drug-nucleic acids interactions

artículo científico publicado en 2008

Electrostatics Explains the Position-Dependent Effect of G⋅U Wobble Base Pairs on the Affinity of RNA Kissing Complexes

artículo científico publicado en 2017

European Institute of Chemistry and Biology

research lab in Pessac, France

Exotic systems: general discussion

scientific article published on 01 July 2019

Fast gas-phase hydrogen/deuterium exchange observed for a DNA G-quadruplex

artículo científico publicado en 2005

Folding and misfolding pathways of G-quadruplex DNA.

artículo científico publicado en 2016

Fragmentation and Isomerization Due to Field Heating in Traveling Wave Ion Mobility Spectrometry

article

Frontispiece: Orienting Tetramolecular G-Quadruplex Formation: The Quest for the Elusive RNA Antiparallel Quadruplex

Fundamentals of ion mobility spectrometry

artículo científico publicado en 2017

G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation

artículo científico publicado en 2008

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

article

Going large(r): general discussion

scientific article published on 01 July 2019

Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes.

artículo científico publicado en 2007

Hybridization of short complementary PNAs to G-quadruplex forming oligonucleotides: An electrospray mass spectrometry study

artículo científico publicado en 2009

Influence of response factors on determining equilibrium association constants of non-covalent complexes by electrospray ionization mass spectrometry

artículo científico publicado en 2003

Influence of the capillary temperature and the source pressure on the internal energy distribution of electrosprayed ions

Influence of the metals and ligands in dinuclear complexes on phosphopeptide sequencing by electron-transfer dissociation tandem mass spectrometry

artículo científico publicado en 2018

Infrared Signature of DNA G-Quadruplexes in the Gas Phase

artículo científico publicado en 2008

Interactions of cryptolepine and neocryptolepine with unusual DNA structures.

artículo científico publicado en 2003

Internal energy and fragmentation of ions produced in electrospray sources

artículo científico publicado en 2005

Internal energy build-up in matrix-assisted laser desorption/ionization

artículo científico publicado en 2004

Investigation of non-covalent interactions between paramagnetic complexes and human serum albumin by electrospray mass spectrometry.

artículo científico

Ion mobility spectrometry reveals duplex DNA dissociation intermediates

artículo científico

Kinetic ESI-MS Studies of Potent Anti-HIV Aptamers Based on the G-Quadruplex Forming Sequence d(TGGGAG)

artículo científico publicado en 2016

Ligand binding mode to duplex and triplex dna assessed by combining electrospray tandem mass spectrometry and molecular modeling

artículo científico publicado en 2007

Ligand binding to tetra-end-linked (TGGGGT)4 G-quadruplexes: an electrospray mass spectroscopy study

artículo científico publicado en 2008

Ligand-Induced Conformational Changes with Cation Ejection upon Binding to Human Telomeric DNA G-Quadruplexes

artículo científico publicado en 2015

Linking molecular models with ion mobility experiments. Illustration with a rigid nucleic acid structure

artículo científico publicado en 2015

Mass spectrometry and ion mobility spectrometry of G-quadruplexes. A study of solvent effects on dimer formation and structural transitions in the telomeric DNA sequence d(TAGGGTTAGGGT)

article

Mass-resolved electronic circular dichroism ion spectroscopy

scientific article published on 01 June 2020

Mercury–thymine interaction with a chair type G-quadruplex architecture

article by Nicole M Smith et al published 2012 in Chemical Communications

More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand

artículo científico publicado en 2018

Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex

artículo científico publicado en 2013

Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides

scientific article published on 26 February 2020

Native Ion Mobility Mass Spectrometry: When Gas-Phase Ion Structures Depend on the Electrospray Charging Process

scientific article published on 28 March 2019

Native Ion Mobility Mass Spectrometry: when Gas Phase Ion Structures Depend on the Electrospray Charging Process

artículo científico publicado en 2019

Native electrospray mass spectrometry of DNA G-quadruplexes in potassium solution.

artículo científico publicado en 2014

New advances in the understanding of the in-source decay fragmentation of peptides in MALDI-TOF-MS ⬇️

artículo científico publicado el 1 de agosto de 2010

New method for characterizing highly disulfide-bridged peptides in complex mixtures: application to toxin identification from crude venoms

artículo científico publicado en 2007

Nucleic acid ion structures in the gas phase.

artículo científico

On the specificity of cyclodextrin complexes detected by electrospray mass spectrometry

artículo científico publicado en 2002

Optimizing Native Ion Mobility Q-TOF in Helium and Nitrogen for Very Fragile Noncovalent Structures

artículo científico publicado en 2018

Orienting tetramolecular G-quadruplex formation: the quest for the elusive RNA antiparallel quadruplex

artículo científico publicado en 2015

Parallel Guanine Duplex and Cytosine Duplex DNA with Uninterrupted Spines of Ag-Mediated Base Pairs

artículo científico publicado en 2018

Positive and negative ion mode ESI-MS and MS/MS for studying drug–DNA complexes

Probing ligand and cation binding sites in G-quadruplex nucleic acids by mass spectrometry and electron photodetachment dissociation sequencing

scientific article published on 25 April 2019

Proteome alteration induced by hTERT transfection of human fibroblast cells

artículo científico publicado en 2008

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

artículo científico publicado en 2009

Quadruplex DNA-guided ligand selection from dynamic combinatorial libraries of acylhydrazones

artículo científico publicado en 2020

Quadruplex Turncoats: Cation-Dependent Folding and Stability of Quadruplex-DNA Double Switches

artículo científico publicado en 2016

Rational selection of the optimum MALDI matrix for top-down proteomics by in-source decay

artículo científico publicado en 2007

Recommendations for Reporting Ion Mobility Mass Spectrometry Measurements

Recommendations for reporting ion mobility Mass Spectrometry measurements ⬇️

article

Response to Comment on Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry

artículo científico publicado en 2020

Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability

artículo científico publicado en 2016

Selective and Cooperative Ligand Binding to Antiparallel Human Telomeric DNA G-Quadruplexes

artículo científico publicado en 2016

Selective recognition of pyrimidine-pyrimidine DNA mismatches by distance-constrained macrocyclic bis-intercalators

artículo científico publicado en 2008

Selectivity in small molecule binding to human telomeric RNA and DNA quadruplexes

scientific article published on 13 November 2009

Sequence and Solvent Effects on Telomeric DNA Bimolecular G-Quadruplex Folding Kinetics

artículo científico publicado en 2013

Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation

artículo científico publicado en 2015

Software for the Analysis and Interpretation of Native Mass Spectrometry Data

Software requirements for the analysis and interpretation of native ion mobility mass spectrometry data

scientific article published on 10 July 2020

Specific Stabilization of c-MYC and c-KIT G-Quadruplex DNA Structures by Indolylmethyleneindanone Scaffolds

artículo científico publicado en 2016

Specific loop modifications of the thrombin-binding aptamer trigger the formation of parallel structures

artículo científico

Stabilization and Structure of Telomeric and c-myc Region Intramolecular G-Quadruplexes: The Role of Central Cations and Small Planar Ligands

artículo científico publicado en 2007

State-of-the-art methodologies for the discovery and characterization of DNA G-quadruplex binders.

artículo científico

Structure and dynamics of oligonucleotides in the gas phase

artículo científico publicado en 2014

Structure of triplex DNA in the gas phase

artículo científico publicado en 2012

Structure-based design of selective high-affinity telomeric quadruplex-binding ligands.

artículo científico publicado en 2010

Synthesis and structural characterization of stable branched DNA g-quadruplexes using the trebler phosphoramidite.

scientific article published on April 2012

Targeting G-quadruplex structure in the human c-Kit promoter with short PNA sequences

artículo científico publicado en 2011

Telomestatin-induced stabilization of the human telomeric DNA quadruplex monitored by electrospray mass spectrometry.

artículo científico publicado en 2003

Tetramolecular G-quadruplex formation pathways studied by electrospray mass spectrometry.

artículo científico publicado en 2010

The structure of an endogenous Drosophila centromere reveals the prevalence of tandemly repeated sequences able to form i-motifs

artículo científico publicado en 2015

Thermal Denaturation of DNA G-Quadruplexes and Their Complexes with Ligands: Thermodynamic Analysis of the Multiple States Revealed by Mass Spectrometry

artículo científico publicado en 2018

Tight Binding of the Antitumor Drug Ditercalinium to Quadruplex DNA

artículo científico publicado en 2002

Tri-G-Quadruplex: Controlled Assembly of a G-Quadruplex Structure from Three G-Rich Strands

artículo científico publicado en 2012

Tridentate N-Donor Palladium(II) Complexes as Efficient Coordinating Quadruplex DNA Binders

artículo científico publicado en 2011

Triplex and quadruplex DNA structures studied by electrospray mass spectrometry.

artículo científico publicado en 2002

UV spectroscopy of DNA duplex and quadruplex structures in the gas phase

artículo científico publicado en 2012

Unexpected Position-Dependent Effects of Ribose G-Quartets in G-Quadruplexes.

artículo científico publicado en 2017

Use of 1,5-diaminonaphthalene to combine matrix-assisted laser desorption/ionization in-source decay fragmentation with hydrogen/deuterium exchange.

artículo científico publicado en 2013

What stoichiometries determined by mass spectrometry reveal about the ligand binding mode to G-quadruplex nucleic acids.

artículo científico publicado en 2017

Zwitterionic i-motif structures are preserved in DNA negatively charged ions produced by electrospray mass spectrometry.

artículo científico publicado en 2010

d(CGGTGGT) forms an octameric parallel G-quadruplex via stacking of unusual G(:C):G(:C):G(:C):G(:C) octads ⬇️

artículo científico publicado el 28 de junio de 2011

d(TGnT) DNA sequences do not necessarily form tetramolecular G-quadruplexes

artículo científico publicado en 2012

Lista de obras de Valérie Gabelica

A pilgrim's guide to G-quadruplex nucleic acid folding

A short C-rich PNA fragment capable to form novel G-quadruplex-PNA complexes

A simple method to determine electrospray response factors of noncovalent complexes

Advantages and drawbacks of nanospray for studying noncovalent protein-DNA complexes by mass spectrometry

Ammonium Ion Binding to DNA G-Quadruplexes: Do Electrospray Mass Spectra Faithfully Reflect the Solution-Phase Species? ⬇️

Analysis of Interactions between Telomeric i-Motif DNA and a Cyclic Tetraoxazole Compound

Anatomy of an Oligourea Six-Helix Bundle

Ascididemin and meridine stabilise G-quadruplexes and inhibit telomerase in vitro.

Assembly of Palladium(II) and Platinum(II) Metallo-Rectangles with a Guanosine-Substituted Terpyridine and Study of Their Interactions with Quadruplex DNA

Assembly of chemically modified G-rich sequences into tetramolecular DNA G-quadruplexes and higher order structures.

Base-dependent electron photodetachment from negatively charged DNA strands upon 260-nm laser irradiation.

Calibration of ion effective temperatures achieved by resonant activation in a quadrupole ion trap

Cation involvement in telomestatin binding to g-quadruplex DNA.

Centromeric Alpha-Satellite DNA Adopts Dimeric i-Motif Structures Capped by AT Hoogsteen Base Pairs

Collision Cross Sections of Phosphoric Acid Cluster Anions in Helium Measured by Drift Tube Ion Mobility Mass Spectrometry

Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry.

Compaction of RNA Hairpins and Their Kissing Complexes in Native Electrospray Mass Spectrometry

Compaction of RNA Hairpins and their Kissing Complexes in Native Electrospray Mass Spectrometry

Comparison between solution-phase stability and gas-phase kinetic stability of oligodeoxynucleotide duplexes

Comparison of the collision-induced dissociation of duplex DNA at different collision regimes: evidence for a multistep dissociation mechanism.

Computational Strategies and Challenges for Using Native Ion Mobility Mass Spectrometry in Biophysics and Structural Biology

Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology

Controlling internal degrees: general discussion

Cooperative 2:1 binding of a bisphenothiazine to duplex DNA.

DNA G-quadruplexes for native mass spectrometry in potassium: a database of validated structures in electrospray-compatible conditions

DNA and RNA telomeric G-quadruplexes: what topology features can be inferred from ion mobility mass spectrometry?

DNA-based nanostructures: The effect of the base sequence on octamer formation from d(XGGYGGT) tetramolecular G-quadruplexes

Design, Synthesis, and Evaluation of 2,9-Bis[(substituted-aminomethyl)phenyl]-1,10-phenanthroline Derivatives as G-Quadruplex Ligands.

Determination of affinity, stoichiometry and sequence selectivity of minor groove binder complexes with double-stranded oligodeoxynucleotides by electrospray ionization mass spectrometry

Dissociation Pathways of Benzylpyridinium "Thermometer" Ions Depend on the Activation Regime: An IRMPD Spectroscopy Study

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats

Drift Tube Ion Mobility: How to Reconstruct Collision Cross Section Distributions from Arrival Time Distributions?

Effective Temperature and Structural Rearrangement in Trapped Ion Mobility Spectrometry

Effective Temperature of Ions in Traveling Wave Ion Mobility Spectrometry

Electron detachment dissociation (EDD) pathways in oligonucleotides

Electron photodetachment dissociation of DNA anions with covalently or noncovalently bound chromophores

Electron photodetachment dissociation of DNA polyanions in a quadrupole ion trap mass spectrometer

Electronic Spectroscopy of Isolated DNA Polyanions

Electronic spectroscopy of isolated DNA polyanions

Electrospray Mass Spectrometry of Telomeric RNA (TERRA) Reveals the Formation of Stable Multimeric G-Quadruplex Structures

Electrospray mass spectrometry to study drug-nucleic acids interactions

Electrostatics Explains the Position-Dependent Effect of G⋅U Wobble Base Pairs on the Affinity of RNA Kissing Complexes

European Institute of Chemistry and Biology

Exotic systems: general discussion

Fast gas-phase hydrogen/deuterium exchange observed for a DNA G-quadruplex

Folding and misfolding pathways of G-quadruplex DNA.

Fragmentation and Isomerization Due to Field Heating in Traveling Wave Ion Mobility Spectrometry

Frontispiece: Orienting Tetramolecular G-Quadruplex Formation: The Quest for the Elusive RNA Antiparallel Quadruplex

Fundamentals of ion mobility spectrometry

G-quadruplex DNA assemblies: loop length, cation identity, and multimer formation

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

Going large(r): general discussion

Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes.

Hybridization of short complementary PNAs to G-quadruplex forming oligonucleotides: An electrospray mass spectrometry study

Influence of response factors on determining equilibrium association constants of non-covalent complexes by electrospray ionization mass spectrometry

Influence of the capillary temperature and the source pressure on the internal energy distribution of electrosprayed ions

Influence of the metals and ligands in dinuclear complexes on phosphopeptide sequencing by electron-transfer dissociation tandem mass spectrometry

Infrared Signature of DNA G-Quadruplexes in the Gas Phase

Interactions of cryptolepine and neocryptolepine with unusual DNA structures.

Internal energy and fragmentation of ions produced in electrospray sources

Internal energy build-up in matrix-assisted laser desorption/ionization

Investigation of non-covalent interactions between paramagnetic complexes and human serum albumin by electrospray mass spectrometry.

Ion mobility spectrometry reveals duplex DNA dissociation intermediates

Kinetic ESI-MS Studies of Potent Anti-HIV Aptamers Based on the G-Quadruplex Forming Sequence d(TGGGAG)

Ligand binding mode to duplex and triplex dna assessed by combining electrospray tandem mass spectrometry and molecular modeling

Ligand binding to tetra-end-linked (TGGGGT)4 G-quadruplexes: an electrospray mass spectroscopy study

Ligand-Induced Conformational Changes with Cation Ejection upon Binding to Human Telomeric DNA G-Quadruplexes

Linking molecular models with ion mobility experiments. Illustration with a rigid nucleic acid structure

Mass spectrometry and ion mobility spectrometry of G-quadruplexes. A study of solvent effects on dimer formation and structural transitions in the telomeric DNA sequence d(TAGGGTTAGGGT)

Mass-resolved electronic circular dichroism ion spectroscopy

Mercury–thymine interaction with a chair type G-quadruplex architecture

More is not always better: finding the right trade-off between affinity and selectivity of a G-quadruplex ligand

Multiple and cooperative binding of fluorescence light-up probe thioflavin T with human telomere DNA G-quadruplex

Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides

Native Ion Mobility Mass Spectrometry: When Gas-Phase Ion Structures Depend on the Electrospray Charging Process

Native Ion Mobility Mass Spectrometry: when Gas Phase Ion Structures Depend on the Electrospray Charging Process

Native electrospray mass spectrometry of DNA G-quadruplexes in potassium solution.

New advances in the understanding of the in-source decay fragmentation of peptides in MALDI-TOF-MS ⬇️

New method for characterizing highly disulfide-bridged peptides in complex mixtures: application to toxin identification from crude venoms