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Lista de obras de Hideaki Nojiri

A CysB-regulated and sigma54-dependent regulator, SfnR, is essential for dimethyl sulfone metabolism of Pseudomonas putida strain DS1.

artículo científico publicado en 2003

A series of crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with various cleavage products

artículo científico publicado en 2005

Alteration of the substrate specificity of the angular dioxygenase carbazole 1,9a-dioxygenase

artículo científico publicado en 2008

Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria

artículo científico publicado en 2011

Analysis of cumene (isopropylbenzene) degradation genes from Pseudomonas fluorescens IP01

artículo científico publicado en 1996

Bacterial degradation of aromatic compounds via angular dioxygenation

artículo científico publicado en 2001

Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples

artículo científico publicado en 2008

Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms

artículo científico publicado en 2010

Bioremediation, a broad perspective

artículo científico publicado en 2009

Carbazole angular dioxygenation and mineralization by bacteria isolated from hydrocarbon-contaminated tropical African soil.

artículo científico publicado en 2014

Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway

artículo científico publicado en 2009

Carbazole/dioxin-degrading car gene cluster is located on the chromosome of Pseudomonas stutzeri strain OM1 in a form different from the simple transposition of Tn4676.

artículo científico publicado en 2003

Characterization and identification of genes essential for dimethyl sulfide utilization in Pseudomonas putida strain DS1.

artículo científico publicado en 2003

Characterization of [3Fe-4S] ferredoxin DbfA3, which functions in the angular dioxygenase system of Terrabacter sp. strain DBF63.

artículo científico publicado en 2005

Characterization of an elicitor-induced rice WRKY gene, OsWRKY71

artículo científico publicado en 2008

Characterization of novel carbazole catabolism genes from gram-positive carbazole degrader Nocardioides aromaticivorans IC177.

artículo científico publicado en 2006

Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.

artículo científico publicado en 2006

Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63.

artículo científico publicado en 2004

Cloning and characterization of a jasmonic acid-responsive gene encoding 12-oxophytodienoic acid reductase in suspension-cultured rice cells.

artículo científico publicado en 2002

Cloning and characterization of cDNAs for the jasmonic acid-responsive Genes RRJ1 and RRJ2 in suspension-cultured rice cells

artículo científico publicado en 2002

Cloning and characterization of genes encoding an enzyme which oxidizes dimethyl sulfide in Acinetobacter sp. strain 20B.

artículo científico publicado en 1997

Cloning of genes involved in carbazole degradation of Pseudomonas sp. strain CA10: nucleotide sequences of genes and characterization of meta-cleavage enzymes and hydrolase

artículo científico publicado en 1997

Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities

artículo científico publicado en 2016

Complete Genome Sequence of Bacillus licheniformis TAB7, a Compost-Deodorizing Strain with Potential for Plant Growth Promotion

article

Complete Genome Sequence of Thalassococcus sp. Strain S3, a Marine Roseobacter Clade Member Capable of Degrading Carbazole

scientific article published on 11 July 2019

Complete Genome Sequence of a Dimethyl Sulfide-Utilizing Bacterium, Acinetobacter guillouiae Strain 20B (NBRC 110550).

artículo científico publicado en 2014

Complete Genome Sequence of an Anaerobic Benzene-Degrading Bacterium, sp. Strain DN11

artículo científico publicado en 2019

Complete Genome Sequence of the Carbazole Degrader Pseudomonas resinovorans Strain CA10 (NBRC 106553)

artículo científico publicado el 25 de julio de 2013

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

scientific article published on 30 August 2018

Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.

artículo científico publicado en 2003

Conjugative Selectivity of Plasmids Is Affected by Coexisting Recipient Candidates

artículo científico publicado en 2018

Conjugative transfer of the IncP-7 carbazole degradative plasmid, pCAR1, in river water samples

artículo científico publicado en 2007

Crystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)

artículo científico publicado en 2003

Crystal structure of the ferredoxin component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10, a novel Rieske non-heme iron oxygenase system

artículo científico publicado en 2005

Crystal structures of a meta-cleavage product hydrolase from Pseudomonas fluorescens IP01 (CumD) complexed with cleavage products

artículo científico publicado en 2002

Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

artículo científico publicado en 2010

Crystallization and preliminary X-ray diffraction studies of the reduced form of the terminal oxygenase component of the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase.

scientific article published on 30 October 2013

Crystallization and preliminary X-ray diffraction studies of the terminal oxygenase component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177

artículo científico publicado en 2006

Crystallization and preliminary crystallographic analysis of the 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase from the carbazole-degrader Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2004

Crystallization and preliminary crystallographic analysis of the ferredoxin component of carbazole 1,9a-dioxygenase from Nocardioides aromaticivorans IC177

artículo científico publicado en 2007

Crystallization and preliminary crystallographic analysis of the terminal oxygenase component of carbazole 1,9a-dioxygenase of Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2002

DNA rearrangement has occurred in the carbazole-degradative plasmid pCAR1 and the chromosome of its unsuitable host, Pseudomonas fluorescens Pf0-1.

artículo científico publicado en 2011

Degradation characteristics of a dibenzofuran-degrader Terrabacter sp. strain DBF63 toward chlorinated dioxins in soil

artículo científico publicado en 2002

Degradation of chlorinated dibenzofurans and dibenzo-p-dioxins by two types of bacteria having angular dioxygenases with different features.

artículo científico publicado en 2001

Differentiation of carbazole catabolic operons by replacement of the regulated promoter via transposition of an insertion sequence

artículo científico publicado en 2006

Dioxin catabolic genes are dispersed on the Terrabacter sp. DBF63 genome

artículo científico publicado en 2002

Divergence of mobile genetic elements involved in the distribution of xenobiotic-catabolic capacity.

artículo científico publicado en 2003

Divergent structures of carbazole degradative car operons isolated from gram-negative bacteria

artículo científico publicado en 2004

Diverse oxygenations catalyzed by carbazole 1,9a-dioxygenase from Pseudomonas sp. Strain CA10.

artículo científico publicado en 1999

Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium

artículo científico publicado en 2005

Effects of carbazole-degradative plasmid pCAR1 on biofilm morphology in Pseudomonas putida KT2440.

artículo científico publicado en 2016

Effects of three different nucleoid-associated proteins encoded on IncP-7 plasmid pCAR1 on host Pseudomonas putida KT2440.

artículo científico publicado en 2015

Electron transfer complex formation between oxygenase and ferredoxin components in Rieske nonheme iron oxygenase system

artículo científico publicado en 2006

Elicitor induced activation of the methylerythritol phosphate pathway toward phytoalexins biosynthesis in rice.

artículo científico publicado en 2007

Enhanced degradation of carbazole and 2,3-dichlorodibenzo-p-dioxin in soils by Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2002

Evidence for the presence of DNA-binding proteins involved in regulation of the gene expression of indole-3-pyruvic acid decarboxylase, a key enzyme in indole-3-acetic acid biosynthesis in Azospirillum lipoferum FS.

artículo científico publicado en 2001

Evolutionary mechanisms of microbial genomes

artículo científico publicado en 2011

Evolutionary mechanisms of microbial genomes 2012.

artículo científico publicado en 2012

Expression, purification, and characterization of 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase from carbazole-degrader Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2003

Functional identification of a rice ent-kaurene oxidase, OsKO2, using the Pichia pastoris expression system

artículo científico publicado en 2008

Genes involved in aniline degradation by Delftia acidovorans strain 7N and its distribution in the natural environment

artículo científico publicado en 2004

Genes involved in the synthesis of the exopolysaccharide methanolan by the obligate methylotroph Methylobacillus sp strain 12S.

artículo científico publicado en 2003

Genetic characterization and evolutionary implications of a car gene cluster in the carbazole degrader Pseudomonas sp. strain CA10.

artículo científico publicado en 2001

Genetic characterization of the dibenzofuran-degrading Actinobacteria carrying the dbfA1A2 gene homologues isolated from activated sludge

artículo científico publicado en 2004

Genetic evidence for the role of isopentenyl diphosphate isomerases in the mevalonate pathway and plant development in Arabidopsis

artículo científico publicado en 2008

Growth phase-dependent expression profiles of three vital H-NS family proteins encoded on the chromosome of Pseudomonas putida KT2440 and on the pCAR1 plasmid

artículo científico publicado en 2017

High-resolution mapping of plasmid transcriptomes in different host bacteria

artículo científico publicado en 2009

Identification and characterization of genes encoding carbazole 1,9a-dioxygenase in Pseudomonas sp. strain CA10.

artículo científico publicado en 1997

Identification of a biosynthetic gene cluster in rice for momilactones.

artículo científico publicado en 2007

Identification of the OsOPR7 gene encoding 12-oxophytodienoate reductase involved in the biosynthesis of jasmonic acid in rice

artículo científico publicado en 2008

Identification of the electron transfer flavoprotein as an upregulated enzyme in the benzoate utilization of Desulfotignum balticum

artículo científico publicado en 2009

Identification of three novel salicylate 1-hydroxylases involved in the phenanthrene degradation of Sphingobium sp. strain P2.

artículo científico publicado en 2003

Inhibition of Pseudomonas aeruginosa swarming motility by 1-naphthol and other bicyclic compounds bearing hydroxyl groups.

artículo científico publicado en 2015

Involvement of Jasmonic Acid in Elicitor-Induced Phytoalexin Production in Suspension-Cultured Rice Cells

artículo científico publicado en 1996

Involvement of the basic helix-loop-helix transcription factor RERJ1 in wounding and drought stress responses in rice plants

artículo científico publicado en 2005

Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice

artículo científico

Isolation and characterization of an alkaliphilic bacterium utilizing pyrene as a carbon source

artículo científico publicado en 2004

Isolation and characterization of genes encoding polycyclic aromatic hydrocarbon dioxygenase from acenaphthene and acenaphthylene degrading Sphingomonas sp. strain A4.

artículo científico publicado en 2004

Isolation and characterization of low-indole-3-acetic acid-producing mutants from Bradyrhizobium elkanii

scientific article published on 01 July 2000

Isolation and characterization of monochloroacetic acid-degrading bacteria

artículo científico publicado en 2011

Isolation and characterization of the genes encoding a novel oxygenase component of angular dioxygenase from the gram-positive dibenzofuran-degrader Terrabacter sp. strain DBF63.

artículo científico publicado en 2001

Large plasmid pCAR2 and class II transposon Tn4676 are functional mobile genetic elements to distribute the carbazole/dioxin-degradative car gene cluster in different bacteria

artículo científico publicado en 2004

Light Response of Pseudomonas putida KT2440 Mediated by Class II LitR, a Photosensor Homolog

scientific article published on 23 September 2020

Marinobacterium sp. strain DMS-S1 uses dimethyl sulphide as a sulphur source after light-dependent transformation by excreted flavins

artículo científico publicado en 2003

Membrane topology and functional analysis of Methylobacillus sp. 12S genes epsF and epsG, encoding polysaccharide chain-length determining proteins

artículo científico publicado en 2012

Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.

artículo científico publicado en 2014

Molecular bases of aerobic bacterial degradation of dioxins: involvement of angular dioxygenation.

artículo científico publicado en 2002

Molecular cloning and characterization of a cDNA encoding ent-cassa-12,15-diene synthase, a putative diterpenoid phytoalexin biosynthetic enzyme, from suspension-cultured rice cells treated with a chitin elicitor

artículo científico publicado en 2004

Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sites

artículo científico publicado en 2002

New classification system for oxygenase components involved in ring-hydroxylating oxygenations

artículo científico publicado en 2001

Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function

artículo científico publicado en 2015

Oligomerization mechanisms of an H-NS family protein, Pmr, encoded on the plasmid pCAR1 provide a molecular basis for functions of H-NS family members

artículo científico publicado en 2014

Organization and transcriptional characterization of catechol degradation genes involved in carbazole degradation by Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2002

Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.

artículo científico publicado en 2014

Oxidation of chlorinated olefins by Escherichia coli transformed with dimethyl sulfide monooxygenase genes or cumene dioxygenase genes.

artículo científico publicado en 1999

ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids

artículo científico publicado en 2012

Phthalate catabolic gene cluster is linked to the angular dioxygenase gene in Terrabacter sp. strain DBF63.

artículo científico publicado en 2002

Plasmid pCAR3 contains multiple gene sets involved in the conversion of carbazole to anthranilate

artículo científico publicado en 2006

Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function

artículo científico publicado en 2010

Polypeptide Requirement of Multicomponent Monooxygenase DsoABCDEF for Dimethyl Sulfide Oxidizing Activity

artículo científico publicado en 1999

Preliminary examinations for applying a carbazole-degrader, Pseudomonas sp. strain CA10, to dioxin-contaminated soil remediation.

artículo científico publicado en 2001

Preparation and biological activity of molecular probes to identify and analyze jasmonic acid-binding proteins.

artículo científico publicado en 2004

Promoter analysis of the elicitor-induced WRKY gene OsWRKY53, which is involved in defense responses in rice

artículo científico publicado en 2009

Promoter analysis of the rice stemar-13-ene synthase gene OsDTC2, which is involved in the biosynthesis of the phytoalexin oryzalexin S.

artículo científico publicado en 2007

Proteome and acylome analyses of the functional interaction network between the carbazole-degradative plasmid pCAR1 and host Pseudomonas putida KT2440.

artículo científico publicado en 2018

Purification and characterization of carbazole 1,9a-dioxygenase, a three-component dioxygenase system of Pseudomonas resinovorans strain CA10

artículo científico publicado en 2002

Purification and characterization of meta-cleavage compound hydrolase from a carbazole degrader Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2003

Purification and identification of naringenin 7-O-methyltransferase, a key enzyme in biosynthesis of flavonoid phytoalexin sakuranetin in rice.

artículo científico publicado en 2012

Purification and partial characterization of the extradiol dioxygenase, 2'-carboxy-2,3-dihydroxybiphenyl 1,2-dioxygenase, in the fluorene degradation pathway from Rhodococcus sp. strain DFA3.

artículo científico publicado en 2016

Purification, characterization, and steady-state kinetics of a meta-cleavage compound hydrolase from Pseudomonas fluorescens IPO1.

artículo científico publicado en 2002

Quantification of the carbazole 1,9a-dioxygenase gene by real-time competitive PCR combined with co-extraction of internal standards.

artículo científico publicado en 2001

RERJ1, a jasmonic acid-responsive gene from rice, encodes a basic helix-loop-helix protein

artículo científico publicado en 2004

Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation.

artículo científico publicado en 2002

Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains.

artículo científico publicado en 2005

Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1.

artículo científico publicado en 2009

Rhizoremediation of dioxin-like compounds by a recombinant Rhizobium tropici strain expressing carbazole 1,9a-dioxygenase constitutively

artículo científico publicado en 2003

Saccharide production from methanol by transposon 5 mutants derived from the extracellular polysaccharide-producing bacterium Methylobacillus sp. strain 12S

scientific article published on 01 September 2000

Secretion of bacterial xenobiotic-degrading enzymes from transgenic plants by an apoplastic expressional system: an applicability for phytoremediation

artículo científico publicado en 2005

Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.

artículo científico publicado en 2013

Specific Interactions between the ferredoxin and terminal oxygenase components of a class IIB Rieske nonheme iron oxygenase, carbazole 1,9a-dioxygenase

artículo científico publicado en 2009

Sphingomonas sp. strain KA1, carrying a carbazole dioxygenase gene homologue, degrades chlorinated dibenzo-p-dioxins in soil

artículo científico publicado en 2002

Stemar-13-ene synthase, a diterpene cyclase involved in the biosynthesis of the phytoalexin oryzalexin S in rice

artículo científico publicado en 2004

Structural Basis of the Divergent Oxygenation Reactions Catalyzed by the Rieske Nonheme Iron Oxygenase Carbazole 1,9a-Dioxygenase

artículo científico publicado en 2014

Structural and molecular genetic analyses of the bacterial carbazole degradation system.

artículo científico

Structural insight into the substrate- and dioxygen-binding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9a-dioxygenase

artículo científico publicado en 2012

Structural similarities and differences in H-NS family proteins revealed by the N-terminal structure of TurB in Pseudomonas putida KT2440

artículo científico publicado en 2016

Structure of the terminal oxygenase component of angular dioxygenase, carbazole 1,9a-dioxygenase

artículo científico publicado en 2005

Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum

artículo científico publicado en 2008

The AtPPT1 gene encoding 4-hydroxybenzoate polyprenyl diphosphate transferase in ubiquinone biosynthesis is required for embryo development in Arabidopsis thaliana

artículo científico publicado en 2004

The Sphingomonas plasmid pCAR3 is involved in complete mineralization of carbazole

artículo científico publicado en 2006

The behavior and significance of degradative plasmids belonging to Inc groups in Pseudomonas within natural environments and microcosms.

artículo científico publicado en 2010

The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids

artículo científico publicado en 2009

The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria

artículo científico publicado en 2005

The potential bioproduction of the pharmaceutical agent sakuranetin, a flavonoid phytoalexin in rice.

artículo científico publicado en 2012

The ptsP gene encoding the PTS family protein EI(Ntr) is essential for dimethyl sulfone utilization by Pseudomonas putida

artículo científico publicado en 2007

The sigma54-dependent transcriptional activator SfnR regulates the expression of the Pseudomonas putida sfnFG operon responsible for dimethyl sulphone utilization

artículo científico publicado en 2005

Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

scientific article published on 04 January 2017

Transcription factors CysB and SfnR constitute the hierarchical regulatory system for the sulfate starvation response in Pseudomonas putida.

artículo científico publicado en 2008

Transcriptional mechanisms for differential expression of outer membrane cytochrome genes omcA and mtrC in Shewanella oneidensis MR-1.

artículo científico publicado en 2015

Transcriptional regulation of the ant operon, encoding two-component anthranilate 1,2-dioxygenase, on the carbazole-degradative plasmid pCAR1 of Pseudomonas resinovorans strain CA10.

artículo científico publicado en 2004

Transcriptional regulation of the sulfate-starvation-induced gene sfnA by a sigma54-dependent activator of Pseudomonas putida.

artículo científico publicado en 2007

Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1

artículo científico

[Diversity of component interactions in the bacterial Rieske non-haem iron oxygenase systems]

artículo científico publicado en 2005

[Functional evolution of bacteria in degradation of environmental pollutants]

artículo científico publicado en 2005