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Lista de obras de Kerrie Barry

A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a ANGUSTIFOLIA Protein

artículo científico publicado en 2018

A comparative genomics study of 23 Aspergillus species from section Flavi

scientific article published on 27 February 2020

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

artículo científico publicado en 2017

A generalist-specialist trade-off between switchgrass cytotypes impacts climate adaptation and geographic range

artículo científico publicado en 2022

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

artículo científico publicado en 2020

A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci

artículo científico publicado en 2020

A genome-wide scan for evidence of selection in a maize population under long-term artificial selection for ear number

artículo científico publicado en 2013

A korarchaeal genome reveals insights into the evolution of the Archaea

artículo científico publicado en 2008

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

article

A parts list for fungal cellulosomes revealed by comparative genomics

artículo científico publicado en 2017

A reference genome for common bean and genome-wide analysis of dual domestications

artículo científico publicado en 2014

A single-cell genomics pipeline for environmental microbial eukaryotes

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

artículo científico publicado en 2015

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

artículo científico publicado en 2020

Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

artículo científico publicado en 2010

Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs

artículo científico publicado en 2012

An insect herbivore microbiome with high plant biomass-degrading capacity

artículo científico publicado en 2010

Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential.

artículo científico publicado en 2014

Analysis of the Phlebiopsis gigantea genome, transcriptome and secretome provides insight into its pioneer colonization strategies of wood

artículo científico publicado en 2014

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).

artículo científico publicado en 2013

Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

artículo científico publicado en 2019

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus

article

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree

article published in the Proceedings of the National Academy of Sciences of the United States of America

Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina

scientific article published on 01 August 2018

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels

artículo científico publicado en 2017

Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship

artículo científico publicado en 2021

Community-wide plasmid gene mobilization and selection

artículo científico publicado en 2013

Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes

artículo científico publicado en 2019

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.

artículo científico publicado en 2015

Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus

artículo científico publicado en 2017

Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens

artículo científico publicado en 2013

Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists

artículo científico publicado en 2018

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

artículo científico publicado en 2012

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales.

artículo científico publicado en 2017

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.

artículo científico publicado en 2017

Comparative genomics of biotechnologically important yeasts

artículo científico publicado en 2016

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum

artículo científico publicado en 2011

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

artículo científico publicado en 2012

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production

artículo científico publicado en 2011

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi.

artículo científico publicado en 2018

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

artículo científico publicado en 2017

Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds

artículo científico publicado en 2016

Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment

artículo científico publicado en 2015

Complete genome sequence of Candidatus Ruthia magnifica

artículo científico publicado en 2010

Complete genome sequence of Methanocorpusculum labreanum type strain Z

artículo científico publicado en 2009

Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1

artículo científico publicado en 2009

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

artículo científico publicado en 2011

Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1

artículo científico publicado en 2009

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus

artículo científico publicado en 2011

Construction and comparison of three reference-quality genome assemblies for soybean

scientific article published on 28 October 2019

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

artículo científico publicado en 2015

Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

artículo científico publicado en 2019

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

artículo científico publicado en 2021

Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium

artículo científico publicado en 2019

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi

artículo científico publicado en 2012

Diversity and population structure of northern switchgrass as revealed through exome capture sequencing

artículo científico publicado en 2015

Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates

scientific article published on 27 September 2018

Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates

artículo científico publicado en 2017

Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass

artículo científico publicado en 2016

Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle.

artículo científico publicado en 2018

Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.

artículo científico publicado en 2014

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.

artículo científico publicado en 2016

Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens

scientific article published on 02 May 2019

Draft Nuclear Genome Sequence of the Liquid Hydrocarbon-Accumulating Green Microalga Botryococcus braunii Race B (Showa)

artículo científico publicado en 2017

Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12

artículo científico publicado en 2017

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum.

artículo científico publicado en 2016

Ectomycorrhizal fungi enhance pine growth by stimulating iron‐dependent mechanisms with trade‐offs in symbiotic performance

artículo científico publicado en 2023

Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

artículo científico publicado en 2022

Enhanced Klebsiella pneumoniae Carbapenemase Expression from a Novel Tn4401 Deletion

artículo científico publicado en 2017

Erratum: Genome sequence of the palaeopolyploid soybean

artículo científico publicado en 2010

Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus.

artículo científico publicado en 2017

Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments

artículo científico publicado en 2017

Extensive Genetic Diversity is Present within North American Switchgrass Germplasm

artículo científico publicado en 2018

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

artículo científico publicado en 2017

Facile recovery of individual high-molecular-weight, low-copy-number natural plasmids for genomic sequencing

artículo científico publicado en 2006

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis

artículo científico publicado en 2017

Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas

artículo científico publicado en 2016

Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers

scientific article published on 08 December 2019

Genetic determinants of endophytism in the Arabidopsis root mycobiome

artículo científico publicado en 2021

Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica.

artículo científico publicado en 2015

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614

artículo científico publicado en 2011

Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives

artículo científico publicado en 2013

Genome biology of the paleotetraploid perennial biomass crop Miscanthus

artículo científico publicado en 2020

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

artículo científico publicado en 2014

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria

article

Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

scientific article published on 23 September 2019

Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen

artículo científico publicado en 2020

Genome sequence of the model rice variety KitaakeX

artículo científico publicado en 2019

Genome sequence of the palaeopolyploid soybean

artículo científico publicado en 2010

Genome sequencing and analysis of the model grass Brachypodium distachyon

artículo científico publicado en 2010

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

artículo científico publicado en 2019

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species

artículo científico publicado en 2014

Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors

artículo científico publicado en 2018

Genome-Wide Sequencing of 41 Rice (Oryza sativa L.) Mutated Lines Reveals Diverse Mutations Induced by Fast-Neutron Irradiation

artículo científico publicado en 2016

Genome-wide association analysis of stalk biomass and anatomical traits in maize

scientific article published on 31 January 2019

Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense-responsive transcription factors in Populus

artículo científico publicado en 2018

Genome-wide associations with flowering time in switchgrass using exome-capture sequencing data

artículo científico publicado en 2016

Genomic and Genetic Insights Into a Cosmopolitan Fungus, (Eurotiales)

scientific article published on 13 December 2018

Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes

artículo científico publicado en 2021

Genomic islands and the ecology and evolution of Prochlorococcus.

artículo científico publicado en 2006

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

artículo científico publicado en 2021

Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

artículo científico publicado en 2020

Horizontal transfer of entire genomes via mitochondrial fusion in the angiosperm Amborella.

artículo científico publicado en 2013

Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome.

artículo científico publicado en 2017

Insights into the effects of long-term artificial selection on seed size in maize

artículo científico publicado en 2014

Insights into the maize pan-genome and pan-transcriptome

artículo científico publicado en 2014

Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)

artículo científico publicado en 2017

Integrative genomics reveals paths to sex dimorphism in Salix purpurea L

artículo científico publicado en 2021

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

article

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

artículo científico publicado en 2020

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens

artículo científico publicado en 2013

Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species ⬇️

artículo científico publicado en 2018

Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9

artículo científico publicado en 2020

Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts.

artículo científico publicado en 2018

Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase

scientific article published on 08 July 2019

Megaphylogeny resolves global patterns of mushroom evolution

artículo científico publicado en 2019

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans

artículo científico publicado en 2022

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

artículo científico publicado en 2006

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens

artículo científico publicado en 2012

Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community

artículo científico publicado en 2010

Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle

artículo científico publicado en 2013

Multi-omic analyses of extensively decayed reveal expression of diverse array of lignocellulose degrading enzymes

artículo científico publicado en 2018

Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel

scientific article published on 01 June 2019

Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.).

artículo científico publicado en 2018

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber ⬇️

artículo científico publicado el 8 de julio de 2011

Overexpression of a Prefoldin β subunit gene reduces biomass recalcitrance in the bioenergy crop Populus

artículo científico publicado en 2019

PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens

artículo científico publicado en 2019

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

artículo científico publicado en 2018

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

artículo científico publicado en 2019

Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

scientific article published on 01 November 2018

Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.

artículo científico publicado en 2018

Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone

artículo científico publicado en 2017

QTL × environment interactions underlie adaptive divergence in switchgrass across a large latitudinal gradient

scientific article published on 10 June 2019

Reference genome sequence of the model plant Setaria

artículo científico publicado en 2012

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

scientific article published in 2018

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing.

artículo científico publicado en 2018

Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment

artículo científico publicado en 2024

Sequencing genomes from single cells by polymerase cloning

artículo científico publicado en 2006

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis

artículo científico publicado en 2015

Sparse panicle1 is required for inflorescence development in Setaria viridis and maize.

artículo científico publicado en 2017

Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea

artículo científico publicado en 2015

Symbiosis insights through metagenomic analysis of a microbial consortium

artículo científico publicado en 2006

The Aquilegia genome: adaptive radiation and an extraordinarily polymorphic chromosome with a unique history

The Calyptogena magnifica chemoautotrophic symbiont genome.

artículo científico publicado en 2007

The Korarchaeota: Archaeal orphans representing an ancestral lineage of life

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

artículo científico publicado en 2012

The Physcomitrella patens gene atlas project: large scale RNA-seq based expression data.

artículo científico publicado en 2018

The Plant Cell Wall-Decomposing Machinery Underlies the Functional Diversity of Forest Fungi

artículo científico publicado en 2011

The Sequence of 1504 Mutants in the Model Rice Variety Kitaake Facilitates Rapid Functional Genomic Studies

article published in 2017

The Sequences of 1,504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies

artículo científico publicado en 2017

The a genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history

scientific article published on 16 October 2018

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

scientific article published in 2021

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota

artículo científico publicado en 2009

The fungus that came in from the cold: dry rot's pre-adapted ability to invade buildings.

artículo científico publicado en 2018

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

artículo científico publicado en 2014

The genome of Eucalyptus grandis

artículo científico publicado en 2014

The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties

scientific article published on 14 May 2012

The genomic landscape of molecular responses to natural drought stress in Panicum hallii

artículo científico publicado en 2018

Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity

Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi

scientific article published on 22 March 2019

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

artículo científico publicado en 2007

Variation and Inheritance of Small RNAs in Maize Inbreds and F1 Hybrids

scientific article published on 01 October 2019

Young inversion with multiple linked QTLs under selection in a hybrid zone.

artículo científico publicado en 2017

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