Lista de obras - Magnus Palmblad - Dominio Público Uruguay

"Lossless" compression of high resolution mass spectra of small molecules

artículo científico publicado en 2010

2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job

artículo científico publicado en 2021

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

scientific article published in 2023

A Pipeline for Differential Proteomics in Unsequenced Species

artículo científico publicado en 2016

A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms

scientific article published on 16 April 2018

A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups

scientific article published on 13 January 2020

A community proposal to integrate proteomics activities in ELIXIR

artículo científico publicado en 2017

A full-body transcriptome and proteome resource for the European common carp.

artículo científico publicado en 2016

A high-stringency blueprint of the human proteome

scientific article published on 16 October 2020

A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter

artículo científico publicado en 1999

A novel mass spectrometry cluster for high-throughput quantitative proteomics.

artículo científico publicado en 2010

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments

artículo científico publicado en 2016

ARA290 improves insulin release and glucose tolerance in type 2 diabetic GK rats

artículo científico publicado en 2015

Alignment of capillary electrophoresis-mass spectrometry datasets using accurate mass information.

artículo científico publicado en 2009

Alpha-particle energy loss measurement of microgram depositions of biomolecules

artículo científico publicado en 2003

An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer

artículo científico publicado en 2000

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

artículo científico publicado en 2015

Authentication of Closely Related Fish and Derived Fish Products Using Tandem Mass Spectrometry and Spectral Library Matching

artículo científico publicado en 2016

Authentication of fish products by large-scale comparison of tandem mass spectra

artículo científico publicado en 2013

Automated Big Data Analysis in Bottom-up and Targeted Proteomics.

artículo científico publicado en 2014

Automated workflow composition in mass spectrometry-based proteomics

scientific article published on 01 February 2019

Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

artículo científico publicado en 2001

Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests

artículo científico publicado en 2006

Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

artículo científico publicado en 2016

Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

artículo científico publicado en 2018

Bibliometric mapping: eight decades of analytical chemistry, with special focus on the use of mass spectrometry.

artículo científico publicado en 2015

COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies.

artículo científico publicado en 2017

Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction

artículo científico publicado en 2007

Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data ⬇️

artículo científico publicado el 5 de septiembre de 2012

Community curation of bioinformatics software and data resources

artículo científico publicado en 2019

Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples

artículo científico publicado en 2022

Comparison of peptide and protein fractionation methods in proteomics

Detection and Structural Elucidation of Esterified Oxylipids in Human Synovial Fluid by Electrospray Ionization-Fourier Transform Ion-Cyclotron Mass Spectrometry and Liquid Chromatography-Ion Trap-MS3: Detection of Esterified Hydroxylated Docosapenta

artículo científico publicado en 2013

Developments in FTICR-MS and Its Potential for Body Fluid Signatures

artículo científico publicado en 2015

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra.

artículo científico publicado en 2016

Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations.

artículo científico publicado en 2009

Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer

artículo científico publicado en 1999

Electron donor-acceptor dyads based on ruthenium(II) bipyridine and terpyridine complexes bound to naphthalenediimide

artículo científico publicado en 2003

Explorative Study of the Protein Composition of Amniotic Fluid by Liquid Chromatography Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

article

Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface

artículo científico publicado en 2011

Fibronectin is a serum biomarker for Duchenne muscular dystrophy

Heat-shock response in Arabidopsis thaliana explored by multiplexed quantitative proteomics using differential metabolic labeling

artículo científico publicado en 2008

High resolution mass spectrometry for rapid characterization of combinatorial peptide libraries

artículo científico publicado en 2010

Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics

artículo científico publicado en 2017

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

artículo científico publicado en 2008

Identification of genetic variants influencing the human plasma proteome

artículo científico publicado en 2013

Identification of meat products by shotgun spectral matching.

artículo científico publicado en 2016

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues

artículo científico publicado en 2014

Immunoglobulin G glycopeptide profiling by matrix-assisted laser desorption ionization Fourier transform ion cyclotron resonance mass spectrometry.

artículo científico publicado en 2010

Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration

artículo científico publicado en 2009

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

artículo científico publicado en 2020

Isotopic Distributions

artículo científico publicado en 2020

Isotopic distributions

artículo científico publicado en 2013

Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

artículo científico publicado en 2002

Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry

artículo científico publicado en 2007

Mass by energy loss quantitation as a practical submicrogram balance

artículo científico publicado en 2005

Mass spectrometry in clinical proteomics - from the present to the future.

artículo científico publicado en 2008

MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS.

artículo científico publicado en 2015

Mechanistic studies of multipole storage assisted dissociation

artículo científico publicado en 2000

Micro-capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry--a powerful tool for peptide and protein identification

artículo científico publicado en 2001

Molecular phylogenetics by direct comparison of tandem mass spectra

artículo científico publicado en 2012

Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer

scientific article published on 20 June 2017

Neuroscience and accelerator mass spectrometry.

artículo científico publicado en 2005

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

artículo científico publicado en 2019

Oxidation of methionine 35 attenuates formation of amyloid beta -peptide 1-40 oligomers

artículo científico publicado en 2002

Parallel deep transcriptome and proteome analysis of zebrafish larvae

artículo científico publicado en 2013

Partially sequenced organisms, decoy searches and false discovery rates

artículo científico publicado en 2012

Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

artículo científico publicado en 2002

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

artículo científico publicado en 2014

Perspectives on automated composition of workflows in the life sciences

artículo científico publicado en 2021

Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry.

artículo científico publicado en 2011

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

artículo científico publicado en 2002

Protein expression dynamics during Escherichia coli glucose-lactose diauxie.

artículo científico publicado en 2011

Protein identification by liquid chromatography-mass spectrometry using retention time prediction

artículo científico publicado en 2004

Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

artículo científico publicado en 2003

Proteomic analysis of Taenia solium metacestode excretion-secretion proteins

artículo científico publicado en 2012

Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling

artículo científico publicado en 2010

Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips

artículo científico publicado en 2005

Quantitative metabolism using AMS: Choosing a labeled precursor.

artículo científico publicado en 2010

Quantitative proteomics using uniform15N-labeling, MASCOT, and the trans-proteomic pipeline

artículo científico publicado en 2007

Rapid analysis of tryptically digested cerebrospinal fluid using capillary electrophoresis-electrospray ionization-Fourier transform ion cyclotron resonance-mass spectrometry

artículo científico publicado en 2002

Retention Time Prediction and Protein Identification

artículo científico publicado en 2020

Retention time prediction and protein identification

artículo científico publicado en 2013

Retention time prediction and protein identification

scientific article published on 01 January 2007

Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics

publication published on 15 September 2021

SPE-MALDI Profiling of Serum Peptides and Proteins by Ultrahigh Resolution FTICR-MS

Scientific workflow management in proteomics

artículo científico publicado en 2012

Scientific workflow optimization for improved peptide and protein identification.

artículo científico publicado en 2015

Scientific workflows for bibliometrics

artículo científico

Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification

artículo científico publicado en 2020

Shotgun proteomics approaches for authentication, biological analyses, and allergen detection in feed and food-grade insect species

scientific article published in 2022

Simple proteomics data analysis in the object-oriented PowerShell.

artículo científico publicado en 2013

Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services

artículo científico publicado en 2017

Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science

scientific article published on 01 February 2019

Species and tissues specific differentiation of processed animal proteins in aquafeeds using proteomics tools

artículo científico publicado en 2016

Species-Specific Discrimination of Insect Meals for Aquafeeds by Direct Comparison of Tandem Mass Spectra.

artículo científico publicado en 2019

Structural analysis of an intact monoclonal antibody by online electrochemical reduction of disulfide bonds and Fourier transform ion cyclotron resonance mass spectrometry.

artículo científico publicado en 2014

Top-down MALDI-in-source decay-FTICR mass spectrometry of isotopically resolved proteins.

artículo científico publicado en 2015

Using the Object-Oriented PowerShell for Simple Proteomics Data Analysis

artículo científico publicado en 2020

Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry

scientific article published on 13 March 2019

Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention

artículo científico publicado en 2018

Visualizing and comparing results of different peptide identification methods.

artículo científico publicado en 2016

WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

artículo científico publicado en 2023

Want to Publish in JPR ? This Is What You Need to Know!

artículo científico publicado en 2022

Lista de obras de Magnus Palmblad

"Lossless" compression of high resolution mass spectra of small molecules

2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job

2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

A Pipeline for Differential Proteomics in Unsequenced Species

A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms

A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups

A community proposal to integrate proteomics activities in ELIXIR

A full-body transcriptome and proteome resource for the European common carp.

A high-stringency blueprint of the human proteome

A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter

A novel mass spectrometry cluster for high-throughput quantitative proteomics.

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments

ARA290 improves insulin release and glucose tolerance in type 2 diabetic GK rats

Alignment of capillary electrophoresis-mass spectrometry datasets using accurate mass information.

Alpha-particle energy loss measurement of microgram depositions of biomolecules

An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer

Assessing the translational landscape of myogenic differentiation by ribosome profiling.

Authentication of Closely Related Fish and Derived Fish Products Using Tandem Mass Spectrometry and Spectral Library Matching

Authentication of fish products by large-scale comparison of tandem mass spectra

Automated Big Data Analysis in Bottom-up and Targeted Proteomics.

Automated workflow composition in mass spectrometry-based proteomics

Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests

Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

Bibliometric mapping: eight decades of analytical chemistry, with special focus on the use of mass spectrometry.

COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies.

Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction

Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data ⬇️

Community curation of bioinformatics software and data resources

Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples

Comparison of peptide and protein fractionation methods in proteomics

Detection and Structural Elucidation of Esterified Oxylipids in Human Synovial Fluid by Electrospray Ionization-Fourier Transform Ion-Cyclotron Mass Spectrometry and Liquid Chromatography-Ion Trap-MS3: Detection of Esterified Hydroxylated Docosapenta

Developments in FTICR-MS and Its Potential for Body Fluid Signatures

Differentiating samples and experimental protocols by direct comparison of tandem mass spectra.

Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations.

Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer

Electron donor-acceptor dyads based on ruthenium(II) bipyridine and terpyridine complexes bound to naphthalenediimide

Explorative Study of the Protein Composition of Amniotic Fluid by Liquid Chromatography Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface

Fibronectin is a serum biomarker for Duchenne muscular dystrophy

Heat-shock response in Arabidopsis thaliana explored by multiplexed quantitative proteomics using differential metabolic labeling

High resolution mass spectrometry for rapid characterization of combinatorial peptide libraries

Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics

Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

Identification of genetic variants influencing the human plasma proteome

Identification of meat products by shotgun spectral matching.

Identifying proteins in zebrafish embryos using spectral libraries generated from dissected adult organs and tissues

Immunoglobulin G glycopeptide profiling by matrix-assisted laser desorption ionization Fourier transform ion cyclotron resonance mass spectrometry.

Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration

Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

Isotopic Distributions

Isotopic distributions

Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry

Mass by energy loss quantitation as a practical submicrogram balance

Mass spectrometry in clinical proteomics - from the present to the future.

MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS.

Mechanistic studies of multipole storage assisted dissociation

Micro-capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry--a powerful tool for peptide and protein identification

Molecular phylogenetics by direct comparison of tandem mass spectra

Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer

Neuroscience and accelerator mass spectrometry.

One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

Oxidation of methionine 35 attenuates formation of amyloid beta -peptide 1-40 oligomers

Parallel deep transcriptome and proteome analysis of zebrafish larvae

Partially sequenced organisms, decoy searches and false discovery rates

Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry.

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

Perspectives on automated composition of workflows in the life sciences

Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry.

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

Protein expression dynamics during Escherichia coli glucose-lactose diauxie.

Protein identification by liquid chromatography-mass spectrometry using retention time prediction

Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

Proteomic analysis of Taenia solium metacestode excretion-secretion proteins

Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling

Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips