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Lista de obras de Hikmet Budak

A Comprehensive Prescription for Plant miRNA Identification

artículo científico publicado en 2016

A large-scale chromosome-specific SNP discovery guideline

artículo científico publicado en 2016

A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice.

artículo científico publicado en 2018

A microsatellite marker for yellow rust resistance in wheat

article by F. Akfirat et al published June 2010 in Cereal Research Communications

Abiotic stress miRNomes in the Triticeae.

artículo científico publicado en 2016

Agrostis

Amplification yield enhancement of short DNA templates using bulk and surface-attached amine-functionalized single-wall carbon nanotubes

Analysis and Exploitation of Cereal Genomes with the Aid of Brachypodium

Analysis of expressed sequence tags (ESTs) from Agrostis species obtained using sequence related amplified polymorphism

artículo científico publicado en 2008

Application of Tissue Culture and Transformation Techniques in Model Species Brachypodium distachyon

artículo científico publicado en 2018

Assembly and Annotation of Transcriptome Provided Evidence of miRNA Mobility between Wheat and Wheat Stem Sawfly

artículo científico publicado en 2017

Author Correction: Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stage in wheat

artículo científico publicado en 2020

Autophagy-related gene, TdAtg8, in wild emmer wheat plays a role in drought and osmotic stress response

artículo científico publicado en 2012

Bioconjugated nanomaterials for monitoring food contamination

Brachypodium as a model for the grasses: today and the future

artículo científico publicado en 2011

Brachypodium genomics

artículo científico publicado en 2008

Breeding Pure Line Cultivars

CRISPR/Cas9 genome editing in wheat

artículo científico publicado en 2017

CRISPR/Cas9 in plants: at play in the genome and at work for crop improvement

article

Capturing Wheat Phenotypes at the Genome Level

artículo científico publicado en 2022

Characterization of a dual biotin tag for improved single stranded DNA production

article

Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides

scientific article published on 13 June 2018

Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential

artículo científico publicado en 2021

Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs

artículo científico publicado en 2004

Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species

artículo científico publicado en 2017

Conserved microRNAs and their targets in model grass species Brachypodium distachyon

artículo científico publicado en 2009

Correction to: A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice

artículo científico publicado en 2018

Dehydration stress-responsive miRNA in Brachypodium distachyon: evident by genome-wide screening of microRNAs expression.

artículo científico publicado en 2011

Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon

artículo científico publicado en 2009

Differential expression of seven conserved microRNAs in response to abiotic stress and their regulatory network in Helianthus annuus

artículo científico

Differential expression of wheat transcriptomes in response to varying cadmium concentrations

scientific article published in 2008

Dispersion quality of amine functionalized multiwall carbon nanotubes plays critical roles in polymerase chain reaction enhancement

artículo científico publicado en 2014

Dissecting miRNAs in Wheat D Genome Progenitor, Aegilops tauschii

artículo científico publicado en 2016

Drought Stress

scholarly article published in 2011

Drought tolerance in modern and wild wheat

Dual-excitation upconverting nanoparticle and quantum dot aptasensor for multiplexed food pathogen detection

artículo científico publicado en 2016

Durum wheat genome highlights past domestication signatures and future improvement targets

artículo científico publicado en 2019

Employment of nanomaterials in polymerase chain reaction: insight into the impacts and putative operating mechanisms of nano-additives in PCR

scholarly article in RSC Advances, vol. 4 no. 69, 2014

Evaluation of seedling characteristics of wheat (Triticum aestivumL.) through canonical correlation analysis

Evolution of Buchloë dactyloides based on cloning and sequencing of matK, rbcL, and cob genes from plastid and mitochondrial genomes

artículo científico publicado en 2005

Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection

artículo científico publicado en 2013

Expression and Cellular Localization of ZIP1 Transporter Under Zinc Deficiency in Wild Emmer Wheat

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

artículo científico publicado en 2017

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives

artículo científico publicado en 2011

From Genetics to Functional Genomics: Improvement in Drought Signaling and Tolerance in Wheat

artículo científico publicado en 2015

Functional features of a single chromosome arm in wheat (1AL) determined from its structure

artículo científico publicado en 2011

G4Boost: a machine learning-based tool for quadruplex identification and stability prediction

artículo científico publicado en 2022

Genetic and Environmental Effects on Dough Mixing Characteristics and Agronomic Performance of Diverse Hard Red Winter Wheat Genotypes

article

Genetic gains for grain yield in high latitude spring wheat grown in Western Siberia in 1900–2008

article

Genetic variation and environmental stability of grain mineral nutrient concentrations in Triticum dicoccoides under five environments

Genome diversity in Brachypodium distachyon: deep sequencing of highly diverse inbred lines.

artículo científico publicado en 2014

Genome sequence of the wheat stem sawfly, Cephus cinctus, a primitive hymenopteran and wheat pest, illuminates evolution of hymenopteran chemoreceptors

Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors

scholarly article by Hugh M Robertson et al published 18 October 2018 in Genome Biology and Evolution

Genome sequencing and analysis of the model grass Brachypodium distachyon

artículo científico publicado en 2010

Genome-wide discovery of G-quadruplexes in barley

artículo científico publicado en 2021

Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application

artículo científico publicado en 2010

Genomics approaches for crop improvement against abiotic stress.

artículo científico publicado en 2013

Global Expression Patterns of Three Festuca Species Exposed to Different Doses of Glyphosate Using the Affymetrix GeneChip Wheat Genome Array

artículo científico publicado en 2009

Harnessing NGS and Big Data Optimally: Comparison of miRNA Prediction from Assembled versus Non-assembled Sequencing Data--The Case of the Grass Aegilops tauschii Complex Genome

artículo científico publicado en 2015

High-throughput SNP genotyping of modern and wild emmer wheat for yield and root morphology using a combined association and linkage analysis

artículo científico publicado en 2017

History and current status of wheat miRNAs using next-generation sequencing and their roles in development and stress

artículo científico publicado en 2014

Hotspots in the genomic architecture of field drought responses in wheat as breeding targets.

artículo científico publicado en 2018

Identifying, cloning and structural analysis of differentially expressed genes upon Puccinia infection of Festuca rubra var. rubra

artículo científico publicado en 2007

In Planta Evidence for the Involvement of a Ubiquitin Conjugating Enzyme (UBC E2 clade) in Negative Regulation of Disease Resistance

article

In silico search and biological validation of microRNAs related to drought response in peach and almond

artículo científico publicado en 2016

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat

article

Intensive herbicide use has selected for constitutively elevated levels of stress-responsive mRNAs and proteins in multiple herbicide-resistant Avena fatua L.

artículo científico publicado en 2017

Interspecies and intergenus transferability of barley and wheat D-genome microsatellite markers

article published in 2010

LncMachine: a machine learning algorithm for long noncoding RNA annotation in plants

Looking back at the past and projecting ahead to the future

artículo científico publicado en 2015

Mapping QTLs conferring salt tolerance and micronutrient concentrations at seedling stagein wheat

artículo científico publicado en 2017

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces

artículo científico publicado en 2010

MicroRNA nomenclature and the need for a revised naming prescription

artículo científico

MicroRNAs in model and complex organisms

artículo científico publicado en 2017

Microfabricated tools for quantitative plant biology.

artículo científico publicado en 2017

Molecular characterization of Buffalograss germplasm using sequence-related amplified polymorphism markers

artículo científico publicado en 2003

Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides

artículo científico publicado en 2006

Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides

artículo científico publicado en 2015

Molecular, morphological, and cytological analysis of diverse Brachypodium distachyon inbred lines.

artículo científico publicado en 2009

Molecular, serological and transmission electron microscopic analysis of the barley yellow dwarf virus-PAVand the cereal yellow dwarf virus-RPV in canary seed (Phalaris canariensisL.)

article

Multiple QTL-effects of wheat Gpc-B1 locus on grain protein and micronutrient concentrations

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing

scientific article published in 2021

Multiple wheat genomes reveal global variation in modern breeding

artículo científico publicado en 2020

NaB integrated graphene oxide membranes for enhanced cell viability and stem cell properties of human adipose stem cells

scholarly article in RSC Advances, vol. 6 no. 61, 2016

New wheat microRNA using whole-genome sequence

artículo científico publicado en 2014

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

artículo científico publicado en 2014

Organellar genome analysis of rye (Secale cereale) representing diverse geographic regions

artículo científico publicado en 2007

Phenotypic and genotypic variability for durable resistance to yellow rust (Puccinia striiformisf. sp.tritici) in Pakistan wheat cultivars

scholarly article by Naimat Ullah et al published 10 February 2014 in Archives of Phytopathology and Plant Protection

Physical mapping integrated with syntenic analysis to characterize the gene space of the long arm of wheat chromosome 1A.

artículo científico publicado en 2013

Plant Genetic Resources: Effective Utilization

article

Plant Small Non-coding RNAs and Their Roles in Biotic Stresses

scientific article published on 20 July 2018

Plant abiotic stress signaling

artículo científico publicado en 2012

Plant miRNAs: biogenesis, organization and origins.

artículo científico

Plasmonic Selection of ssDNA Aptamers against Fibroblast Growth Factor Receptor

scientific article published on 02 July 2019

Proteome changes in wild and modern wheat leaves upon drought stress by two-dimensional electrophoresis and nanoLC-ESI-MS/MS.

artículo científico publicado en 2013

Quantitative trait loci conferring grain mineral nutrient concentrations in durum wheat x wild emmer wheat RIL population

artículo científico publicado en 2009

RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats

artículo científico publicado en 2017

Regulation of barley miRNAs upon dehydration stress correlated with target gene expression

artículo científico publicado en 2010

Revealing constitutively expressed resistance genes in Agrostis species using PCR-based motif-directed RNA fingerprinting

article

Review of current methodological approaches for characterizing microRNAs in plants

artículo científico publicado en 2009

Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress

artículo científico

Sequencing chromosome 5D of Aegilops tauschii and comparison with its allopolyploid descendant bread wheat (Triticum aestivum).

artículo científico publicado en 2014

Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress

artículo científico publicado en 2008

Sorting the wheat from the chaff: identifying miRNAs in genomic survey sequences of Triticum aestivum chromosome 1AL.

artículo científico publicado en 2012

Stress responsive miRNAs and isomiRs in cereals

artículo científico

Subgenomic analysis of microRNAs in polyploid wheat

artículo científico publicado en 2012

THROUGH THE LOOKING GLASS: Real-Time Imaging in Brachypodium Roots and Osmotic Stress Analysis

article

TMPIT1 from wild emmer wheat: first characterisation of a stress-inducible integral membrane protein

artículo científico publicado en 2011

Techniques to study autophagy in plants

scientific article published on 27 August 2009

The barley pan-genome reveals the hidden legacy of mutation breeding

artículo científico publicado en 2020

The complete genome sequence of elite bread wheat cultivar, “Sonmez”

artículo científico publicado en 2022

The drought response displayed by a DRE-binding protein from Triticum dicoccoides

artículo científico publicado en 2011

The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements

artículo científico publicado en 2015

The use of microsatellite markers for the detection of genetic similarity among winter bread wheat lines for chromosome 3A.

artículo científico publicado en 2004

Through the Looking Glass: Real Time Imaging in Brachypodium Roots and Osmotic Stress Analysis

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat

artículo científico publicado en 2009

Transferability and polymorphism of barley EST-SSR markers used for phylogenetic analysis in Hordeum chilense

artículo científico publicado en 2008

Trends in aptamer selection methods and applications

artículo científico

Turfgrass species response exposed to increasing rates of glyphosate application

Understanding ploidy complex and geographic origin of the Buchloe dactyloides genome using cytoplasmic and nuclear marker systems

artículo científico publicado en 2005

Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing

artículo científico publicado en 2013

Virus-induced gene silencing, a post transcriptional gene silencing method

artículo científico publicado en 2009

Wet laboratory tools widely used in plant genomics

artículo científico publicado en 2009

Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors

artículo científico publicado en 2016

Wheat syntenome unveils new evidences of contrasted evolutionary plasticity between paleo- and neoduplicated subgenomes.

artículo científico publicado en 2013

Wild emmer genome architecture and diversity elucidate wheat evolution and domestication.

artículo científico publicado en 2017

Zn-Deficiency Responsive Transcripts in Agrostis Species Revealed by mRNA Differential Display

miRNA expression patterns of Triticum dicoccoides in response to shock drought stress

artículo científico publicado en 2010

mirMachine: A One-Stop Shop for Plant miRNA Annotation

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)

artículo científico publicado en 2016

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