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Lista de obras de Ramunas Stepanauskas

129I in Swedish rivers: distribution and sources

artículo científico publicado en 2003

A compendium of bacterial and archaeal single-cell amplified genomes from oxygen deficient marine waters

artículo científico publicado en 2023

A virus or more in (nearly) every cell: ubiquitous networks of virus-host interactions in extreme environments.

artículo científico publicado en 2018

Ancestral Absence of Electron Transport Chains in Patescibacteria and DPANN

scientific article published on 17 August 2020

Antibiotic resistance in the shellfish pathogen Vibrio parahaemolyticus isolated from the coastal water and sediment of Georgia and South Carolina, USA.

artículo científico publicado en 2008

Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads

Assembling single-cell genomes and mini-metagenomes from chimeric MDA products

artículo científico publicado en 2013

Assembling the marine metagenome, one cell at a time

artículo científico publicado en 2009

Assessing the contribution of wetlands and subsided islands to dissolved organic matter and disinfection byproduct precursors in the Sacramento–San Joaquin River Delta: A geochemical approach

article

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

artículo científico publicado en 2019

Author Correction: Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles

artículo científico publicado en 2017

Bacterial tolerances to metals and antibiotics in metal-contaminated and reference streams

artículo científico publicado en 2006

Bioavailability and sources of DOC and DON in macrophyte stands of a tropical coastal lake

Biomass of pelagic fungi in Baltic rivers

article published in 2008

Capturing diversity of marine heterotrophic protists: one cell at a time

artículo científico publicado en 2010

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

artículo científico publicado en 2012

Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere

scientific article published on 07 February 2019

Cell sorting analysis of geographically separated hypersaline environments.

artículo científico publicado en 2013

Characterization of Two Cryptic Plasmids Isolated in Haiti from Clinical Vibrio cholerae Non-O1/Non-O139.

artículo científico publicado en 2017

Charting the Complexity of the Marine Microbiome through Single-Cell Genomics

scientific article published on 01 December 2019

Clean room microbiome complexity impacts planetary protection bioburden

scientific article published on 04 December 2021

Co-selection of antibiotic and metal resistance

artículo científico publicado en 2006

Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage

artículo científico publicado en 2014

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

artículo científico publicado en 2013

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations

Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.

artículo científico publicado en 2017

Correction: Single-cell genomics shedding light on marine Thaumarchaeota diversification

artículo científico publicado en 2020

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

artículo científico publicado en 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

article

Coselection for microbial resistance to metals and antibiotics in freshwater microcosms

artículo científico publicado en 2006

De novo synthesis and functional analysis of the phosphatase-encoding gene acI-B of uncultured Actinobacteria from Lake Stechlin (NE Germany).

artículo científico publicado en 2015

Decontamination of MDA reagents for single cell whole genome amplification

artículo científico publicado en 2011

Decoupling of respiration rates and abundance in marine prokaryoplankton

artículo científico publicado en 2022

Differential Dissolved Organic Nitrogen Availability and Bacterial Aminopeptidase Activity in Limnic and Marine Waters

artículo científico publicado en 1999

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution

artículo científico publicado en 2022

Diverse Marinimicrobia bacteria may mediate coupled biogeochemical cycles along eco-thermodynamic gradients.

artículo científico publicado en 2017

Diversification and niche adaptations of Nitrospina-like bacteria in the polyextreme interfaces of Red Sea brines.

artículo científico publicado en 2015

Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation

scientific article published on 30 November 2020

Ecological Genomics of the Uncultivated Marine Roseobacter Lineage CHAB-I-5.

artículo científico publicado en 2016

Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics

artículo científico publicado en 2014

Elevated microbial tolerance to metals and antibiotics in metal-contaminated industrial environments

artículo científico publicado en 2005

Emergence of trait variability through the lens of nitrogen assimilation in

artículo científico publicado en 2019

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters

artículo científico publicado en 2014

Evolutionary stasis of a deep subsurface microbial lineage

artículo científico publicado en 2021

Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes.

artículo científico publicado en 2017

Expansion of the global RNA virome reveals diverse clades of bacteriophages

artículo científico publicado en 2022

Exploring Microdiversity in Novel Kordia sp. (Bacteroidetes) with Proteorhodopsin from the Tropical Indian Ocean via Single Amplified Genomes

artículo científico

Flow-cytometric cell sorting and subsequent molecular analyses for culture-independent identification of bacterioplankton involved in dimethylsulfoniopropionate transformations.

artículo científico publicado en 2005

Four Draft Single-Cell Genome Sequences of Novel, Nearly Identical Strains Isolated from the Continental Deep Subsurface

artículo científico publicado en 2019

Fundamental differences in diversity and genomic population structure between Atlantic and Pacific Prochlorococcus.

artículo científico publicado en 2017

Gene exchange networks define species-like units in marine prokaryotes

artículo científico publicado en 2020

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi

artículo científico publicado en 2013

Genomic Analysis of the Yet-Uncultured Binatota Reveals Broad Methylotrophic, Alkane-Degradation, and Pigment Production Capacities

artículo científico publicado en 2021

Genomic Characterization of Candidate Division LCP-89 Reveals an Atypical Cell Wall Structure, Microcompartment Production, and Dual Respiratory and Fermentative Capacities

scientific article published on 02 May 2019

Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs.

artículo científico publicado en 2017

Genomic Variation Influences Fitness in Marine Hydrothermal Systems

artículo científico publicado en 2021

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres

artículo científico publicado en 2014

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

artículo científico publicado en 2017

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

Genomic exploration of individual giant ocean viruses

artículo científico publicado en 2017

Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount

artículo científico publicado en 2015

Genomic sequencing of single microbial cells from environmental samples

artículo científico publicado en 2008

Genomics insights into ecotype formation of ammonia-oxidizing archaea in the deep ocean

scientific article published on 31 January 2019

Hidden diversity in honey bee gut symbionts detected by single-cell genomics

artículo científico publicado en 2014

Hiding in Plain Sight: The Globally Distributed Bacterial Candidate Phylum PAUC34f

artículo científico publicado en 2020

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton.

artículo científico publicado en 2011

Hydrogen-based metabolism - An ancestral trait in lineages sibling to the Cyanobacteria

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria

artículo científico publicado en 2019

Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota ⬇️

artículo científico publicado en 2023

Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles.

artículo científico publicado en 2017

Influence of industrial contamination on mobile genetic elements: class 1 integron abundance and gene cassette structure in aquatic bacterial communities

artículo científico publicado en 2008

Insights into the dynamics between viruses and their hosts in a hot spring microbial mat

artículo científico publicado en 2020

Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5.

artículo científico publicado en 2008

Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'

artículo científico publicado en 2014

Insights into the phylogeny and coding potential of microbial dark matter

artículo científico publicado en 2013

Landscape scale controls on the vascular plant component of dissolved organic carbon across a freshwater delta

article

Life strategies for Aminicenantia in subseafloor oceanic crust

artículo científico publicado en 2023

Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation.

artículo científico publicado en 2017

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

artículo científico publicado en 2007

Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton

artículo científico publicado en 2012

Methylotrophy, alkane-degradation, and pigment production as defining features of the globally distributed yet-uncultured phylum Binatota

artículo científico publicado en 2020

Microbial Diversity and Function in Shallow Subsurface Sediment and Oceanic Lithosphere of the Atlantis Massif

scientific article published on 03 August 2021

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

artículo científico publicado en 2017

Multi-site analysis reveals widespread antibiotic resistance in the marine pathogen Vibrio vulnificus.

artículo científico publicado en 2008

Nanoarchaeota, Their Sulfolobales Host, and Nanoarchaeota Virus Distribution across Yellowstone National Park Hot Springs

artículo científico publicado en 2015

New abundant microbial groups in aquatic hypersaline environments

artículo científico publicado en 2011

Novel Integrative Elements and Genomic Plasticity in Ocean Ecosystems

artículo científico publicado en 2021

Novel integrative elements and genomic plasticity in ocean ecosystems

artículo científico publicado en 2020

Novel integrative elements and genomic plasticity in ocean ecosystems

artículo científico publicado en 2023

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics

artículo científico publicado en 2014

Occurrence and degradation of peptidoglycan in aquatic environments.

artículo científico publicado en 2003

Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume

artículo científico publicado en 2021

Omnitrophota encompasses diverse and hyperactive nanobacteria: Potential metabolisms and host-dependent lifestyles

artículo científico publicado en 2022

Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics.

artículo científico publicado en 2017

Pangenomics Analysis Reveals Diversification of Enzyme Families and Niche Specialization in Globally Abundant SAR202 Bacteria

scientific article published on 07 January 2020

Phosphonate production by marine microbes: Exploring new sources and potential function

artículo científico publicado en 2022

Phosphonate production by marine microbes: exploring new sources and potential function

artículo científico publicado en 2020

Phylogenetically and functionally diverse microorganisms reside under the Ross Ice Shelf

artículo científico publicado en 2022

Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution

scientific article published on 25 April 2019

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

artículo científico publicado en 2011

Predominant archaea in marine sediments degrade detrital proteins.

artículo científico publicado en 2013

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

artículo científico publicado en 2013

Productivity and salinity structuring of the microplankton revealed by comparative freshwater metagenomics

artículo científico publicado en 2013

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

artículo científico publicado en 2013

Re-defining microbial diversity from its single-celled building blocks

artículo científico publicado en 2015

Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota

artículo científico publicado en 2023

Report of the workshop for life detection in samples from Mars

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

artículo científico publicado en 2017

SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter

artículo científico publicado en 2017

Single Cell Genomics Reveals Viruses Consumed by Marine Protists

artículo científico publicado en 2020

Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System

scientific article published on 12 June 2019

Single cell genome sequencing of laboratory mouse microbiota improves taxonomic and functional resolution of this model microbial community

artículo científico publicado en 2022

Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments

scientific article published on 04 September 2018

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population

artículo científico publicado en 2015

Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems

artículo científico publicado en 2019

Single cell genomics: an individual look at microbes

artículo científico publicado en 2012

Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling

artículo científico publicado en 2016

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

artículo científico publicado en 2014

Single-cell genomics of a rare environmental alphaproteobacterium provides unique insights into Rickettsiaceae evolution

artículo científico publicado en 2015

Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis

artículo científico publicado en 2018

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

artículo científico publicado en 2018

Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade

artículo científico publicado en 2013

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

artículo científico publicado en 2014

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer

artículo científico publicado en 2014

Single-cell genomics reveals organismal interactions in uncultivated marine protists.

artículo científico publicado en 2011

Single-cell genomics shedding light on marine Thaumarchaeota diversification.

artículo científico publicado en 2013

Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

artículo científico publicado en 2015

Sources, bioavailability, and photoreactivity of dissolved organic carbon in the Sacramento–San Joaquin River Delta

article

Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem

artículo científico publicado en 2024

Strategies to improve reference databases for soil microbiomes

scientific article published on 09 December 2016

Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics

artículo científico publicado en 2021

Targeted sorting of single virus-infected cells of the coccolithophore Emiliania huxleyi

artículo científico publicado en 2011

The cyanobacterium has divergent light-harvesting antennae and may have evolved in a low-oxygen ocean

artículo científico publicado en 2021

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria

artículo científico publicado en 2016

Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.

artículo científico publicado en 2016

Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae

scientific article published on 23 June 2017

Unveiling in situ interactions between marine protists and bacteria through single cell sequencing

artículo científico publicado en 2011

Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

artículo científico publicado en 2017

What's new is old: resolving the identity of Leptothrix ochracea using single cell genomics, pyrosequencing and FISH

artículo científico publicado en 2011

Wiretapping into microbial interactions by single cell genomics

artículo científico publicado en 2015

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